Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_34339	LG10	10482163	10482699	PREDICTED: ethylene-responsive transcription factor ERF020	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
A/C	10482279	missense_variant	p.Gln39His
G/T	10482280	stop_gained	p.Glu40*
C/G	10482404	missense_variant	p.Ser81Cys
C/T	10482477	synonymous_variant	p.Val105Val
G/A	10482552	synonymous_variant	p.Glu130Glu
G/T	10482557	missense_variant	p.Arg132Met

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_34339.1

MSKSSALHAICPSRDHKFKGVRRRKWGKWVSEIRVPGTQERLWLGTYVTPEAAAVAHDVAVYCLRRPSSLDKLNLPDTLSSYSGQLRDMSPRSVQKVASDVGMDVDARNIAAGGSSSGVAQSQESEKKMEERNGIVGADDSDEFWWNGFEGYDTATWKGSGEDCADRDALNISIEDYL*

CDS Sequence:
>Vu_34339.1

ATGAGTAAAAGTTCAGCGCTGCATGCAATTTGTCCAAGCAGGGACCACAAGTTTAAGGGGGTTCGCCGTCGCAAATGGGGCAAGTGGGTGTCGGAGATTCGCGTTCCGGGCACCCAAGAGCGGCTCTGGCTGGGAACCTACGTCACGCCGGAGGCGGCGGCGGTTGCCCACGACGTCGCCGTATACTGTCTCAGGAGGCCTTCTTCGTTGGACAAACTTAACTTGCCAGACACCTTGTCTTCTTACAGTGGTCAGCTGAGGGACATGTCTCCAAGGTCTGTTCAGAAGGTGGCTTCCGATGTTGGCATGGATGTCGACGCCAGAAACATTGCTGCCGGCGGAAGTTCAAGTGGGGTGGCACAAAGTCAGGAGAGTGAGAAGAAAATGGAGGAAAGGAATGGCATTGTTGGAGCTGATGATTCTGATGAGTTCTGGTGGAATGGTTTTGAGGGCTATGATACTGCGACTTGGAAAGGAAGCGGTGAAGATTGTGCAGATAGGGATGCCTTGAACATTTCCATTGAAGACTATCTTTAG

Promoter Sequence:
>Vu_34339::LG10:10480163-10482163(+)

AATGTGCATTATAGATACTTGTTAGATGTGGTTCTCATTAGATATTGAAACCCAGGTTGAACTCTTCAACCATTATTCTCTTCACACAAAAAGTGACTCTCTTAACTAAATATATAGATTAAGGTTGACATTTTAAGATATTCTTTTACATATTTTTATTTAGTTGAAGACACGCAATGAACTCTGGTTGTATGTTGTTTTTAATACGATTTCTGGGTTGCTAATGAAACATCATTAATGGCATGATGTAAACAGAAAACAACAAATTTTCACTTTTCCATGCCCGCTTTGAATTCTCACTTGGGCTCTAAGCAAATTGCTCTACTTGCACAATCTAATTTTCTTTAACTTTTTGTCGTTCTCATAAAGACACCATCTATCACCATCATTTTCTTAACTCTCACAACTTTTATTTAATGAAGAAAGCGAATATGGTATTACCATCTCGTGAACCAAATGAAACATTTCTGTTCAAACTCTCCATCGGTTTTTGGAATATAGTTTGTGTACAAAATGACATAGCATGTGTGGGCATGTATAACTTGCATTTGGTATGAAAATTCTTCTTTTCCTTTCCACCATTGAATCAGAGTTATGTAAATCGTGTTTTTCTTTTTATAAAAGCACCAAATTGGTGTAGTTTTTCTTTTAAATTATTAAAATGAGTAGTATTAGCAATAAATGTACAATTATTTAAATATGAATTAAAAAAATGGTGTCTGTCAACACGATTTTTCTTAAGAAATTGTGATGATTATTGAGTGTATACACTCTTGTTGGAAGAAAAATTTAGCAAAGTCATACTTAAAAGAATTAAAGCATATTTTATGAATAATATAATTGATACTATCTGTACCTACAAATATCATTATTCACAGAAAATTAAAATTAAAATTTAATTTATATTTTATTAATTAAATTTAATTAAAGTTAAATTTTAATTTATATTTAATTTAATTTATATTATGTTTTTTTAATTTTATTTTAAAAATTTATAAAATATATTTTTTTAAATATTTATAAATACATACAAATATGCCTACATTTTAAAATGTTTATAGAATATGTTTTCAAGCAGACACTCAACATATAACATATAACATGACGAATAACAGATCAATTTTCTTCTATTGCAAATTGAATATTGGATAAATATGTCATACCCGTCGTCATCCTACTAATATAATAACAATAAGGTCACTATAAAATTAGACATTATTTTGTTCACATTGAACTTATCTCTGTTATTAAATATTATGAAGTCGGTACGTGCTTTTCTACATATAGTCATACATACCTTATGAAGAAGAGGTCTAAGGAAGGGTCCAACACGACAACACTCAACCACGCGCTAATCACCACGCGCTAATCACCACGCGCACACTTCTGGCTCCAAGTAGTTGTGTGTATTATCACTCCTCGGGATGCGCGTGGGCTTCCAAAGCAATAACTGAGCATCGTAAATCAAATTCACGTGCCACAATTTTCTCAACAAGTGGAAGATTCATTTAGAAAATACAAAAACATTGATGAGGAGTTTAGGAGTTCAAATAAAATATATTAACAAGTCAACACAAATTAATTTTTTATTAAATTACGAAAATTGTGACAAAATGATATTATAGATACTTTCATGATAGCTAAGAAAGTAAAGTTATCATTTTTCCATTGATAATATAGTGTATTTAATGGAAAAAAATATTATTAATAGTATGAGTTAAAAGAATTTTATTGGTATACAGGCAGAGGTGATGTTGTATGATTCCTTTGTCCCTCCAAGTTGGTTAGACTTTACTTAATTACATGCATTTGATCATATAGTTTTACTTTGACTTTGAAAATTTTGACTTTCGATCCTTCCACCGTCCTCTTACTATGTTGCCTCTTTCAATCTCTCTGACTCTTAAATTCTTCAACCCTATATAAACCACACTGTCCTCCATCTCTCTCTCACAGATTCAACAAACTCAGTACAGATACCATAATCTCGGTTACCCAAA

Gene Sequence:

>Vu_34339(+)