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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34331 LG10 10437708 10438259 PREDICTED: ethylene-responsive transcription factor ERF021-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/C 10437954 missense_variant p.Val83Leu
A/G 10438046 synonymous_variant p.Gly113Gly
G/T 10438064 synonymous_variant p.Ala119Ala
C/G 10438065 missense_variant p.Pro120Ala
G/A 10438139 synonymous_variant p.Thr144Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34331.1
MDMPPSSTHVGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGRDARLNFPELASTLPRPVSNNADHIRMAAHEAALRLRTNPAPPETEIGGGSSTAPPLTVRLSPTQIQAINDCPMDSPQTWMQMPDTFMMHDQSMMFANGYAFEDNEWEDMQNDSLWDP*


CDS Sequence:
>Vu_34331.1
ATGGACATGCCACCCAGTTCAACCCATGTTGGTGCTGCGTCTTCTGCATACAGAGGAGTCCGCAAGAGAAAATGGGGCAAGTGGGTCTCCGAAATCCGCGAGCCGGGAACCAAGACGCGAATTTGGCTCGGAAGTTTCGAGACGCCGGAGATGGCCGCCGCCGCCTACGACGTGGCGGCGTTGCATTTCCGCGGCCGCGACGCCAGGCTCAACTTCCCCGAGCTCGCAAGCACGCTGCCACGCCCCGTCAGCAACAATGCCGACCACATACGCATGGCGGCGCACGAGGCGGCCCTGAGGCTCCGAACCAACCCCGCCCCGCCGGAGACTGAGATAGGAGGCGGTTCCTCGACGGCGCCGCCGCTGACAGTGAGACTCTCCCCCACTCAGATTCAGGCCATCAATGACTGCCCCATGGACTCCCCTCAGACGTGGATGCAAATGCCGGACACTTTCATGATGCACGATCAATCCATGATGTTCGCAAATGGTTATGCCTTTGAAGACAACGAGTGGGAGGATATGCAGAATGATTCTCTCTGGGATCCTTAG


Promoter Sequence:
>Vu_34331::LG10:10435708-10437708(+)
ACGGTGCTGATAACTTTTATATTGTTATAAACAAATGGCAATTTATTTATTTCATTATGTTTGGTTGATGTTTGTTTTATCACTTAAATGACTTTTAGGATGTTTTCAATGCTTTACCAAATAGAAGTTTATATATATATTTAAAATATTTAGTAATTAATTTTATTTGATTTGATTTTAAAATGTTTCTTTAATATAAAACATATTGGATTTGTTAAATTTTTATTTATAATTTTAAAAAGTAATTTTAATTATTATAAAATAAAAAATAATAATATAAAATTGAAGAATATTAATAATGGTGAACTTTTAGTTGATTTTAATTGATGTTAATTTTTCATCATTGATCGATGTTGGTGGAGATTATTTCAATTAATGTTGATTACAATTATTTAAGTCGACATCAATTAAAACTATATTTTCGAGTTGAAATCTATTTTTTGTTGACATTTTTTATTAGTGTTGACAGGAAATTTTTCTAAGGCGATATTGAAAAAAAAATCTCAGTTAATGTTTATCATTAAACCTCTTAATCAATATTAGAAACATAAAAATCATCGCATATTAATGACAAAGAAGAACATTGATGTTAATAAAAAGAAAGATAATTAAATATGTCAGAAAAATACCTCTTTAATATTAGCCAAAAAAGCCTAACTTGATATGGACAGTAAAACAATAACAATCTATGAAAAAAATAATGGTAAAATACAAATGAAAACAATTTTTAATATGATATTAAAACATATAAAAAAAGTTTATGTTTACAGTATTCTTGTTAAGATTAATCGTGTGATCTGCAATTGAACTCTTACCAAATTGTCATATATATATATATATATATATCAATTTTGCCTTTAAACAAATCGAATTTTAAAAGTTTAATTTGTTTACAATTCATTAAGCAAGTGTAAATTACTTTTTAATTTGAAGACATTTAAAAGAAAACTGGAAAGAGAAATGGAATTATTTAGAAGCTATCATTTGATAGATATTAACAGAGAAATAGTTAAATTATTAAATAAAATACCATATATACTATATATAATAAATATTATATCATTAAATAATTCCAATTATAAATTTGAGTAATATTTTTAAATCAATCACCATTCATTAATATATTGTCTGTTTTATAATTTTATCACAATTTTATCTTTAAAATATATTTTGATAAATGAAAGAAGAAAAATTTATTTAAATTATTTTATATTTTGACTCTTAAATAATATAAAATTATTGAACAACATATAAACATACACCATGATATGAAAATATAAAGTAAAAGTAGAAGTGAAGTGTATCTATATGACCTATAAAGTTTTTATCCGCTACAAAATATAGACACGCCTGAATAAACTAAAAGCACCAAAACACGAGTATCTCCATTTAAATAAACATGTTCATGTCCATGCTGATCTAACATTTCCAAAACCTTATATTAGATTCTACGAATTTGGAATTCTGATTGGAAAAACCATTGCCACCTAAGTTTTCAAAACGCGTCCTAAACAGTCACTCTTCTCACTTAATCCAATCCCCAAATTTTCAACTTCAAAAAGTTTGCACAAAAACACATGTCACCACCTCCAACCTCTTCACTTCCCAATCTTAACAAAAACAAAAATACTCACAAAAAATCTTCACCATTCCCTCAATATTTAAGTACAACATCACCAATACTTACCCGTTATTGTTCATAAAGCAAAAAGTATCACCCAATCAAACCCAAAATAAAAATAATAACCATAATAAAAAACACAGACATAGATTTTGTTGGAAAACAAAGGGCAAAGGAAGCAGCTACGAGGAAGCTCACCAAAACCAAGATGTTGCTCATGCTCCCACGTTTCACATCCACATCTTATAAATACCGACAACAATGTTCCGGACATCACTACTACAACCGTTAGCTATTACAATTCACAACACCACCGAAAACATTTTATAATTCAAGTGCAACATTACTCAAATTTCAAAGCTTGGACACTGATTTTGCA


Gene Sequence:
>Vu_34331(+)
ATGGACATGCCACCCAGTTCAACCCATGTTGGTGCTGCGTCTTCTGCATACAGAGGAGTCCGCAAGAGAAAATGGGGCAAGTGGGTCTCCGAAATCCGCGAGCCGGGAACCAAGACGCGAATTTGGCTCGGAAGTTTCGAGACGCCGGAGATGGCCGCCGCCGCCTACGACGTGGCGGCGTTGCATTTCCGCGGCCGCGACGCCAGGCTCAACTTCCCCGAGCTCGCAAGCACGCTGCCACGCCCCGTCAGCAACAATGCCGACCACATACGCATGGCGGCGCACGAGGCGGCCCTGAGGCTCCGAACCAACCCCGCCCCGCCGGAGACTGAGATAGGAGGCGGTTCCTCGACGGCGCCGCCGCTGACAGTGAGACTCTCCCCCACTCAGATTCAGGCCATCAATGACTGCCCCATGGACTCCCCTCAGACGTGGATGCAAATGCCGGACACTTTCATGATGCACGATCAATCCATGATGTTCGCAAATGGTTATGCCTTTGAAGACAACGAGTGGGAGGATATGCAGAATGATTCTCTCTGGGATCCTTAG

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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