People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34188 LG10 9415133 9416433 PREDICTED: somatic embryogenesis receptor kinase 2-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/G 9415239 downstream_gene_variant
A/C 9415240 downstream_gene_variant
A/G 9415271 downstream_gene_variant
G/C 9415471 downstream_gene_variant
C/A 9415510 downstream_gene_variant
A/T 9415534 downstream_gene_variant
G/T 9415597 downstream_gene_variant
T/C 9415710 downstream_gene_variant
T/A 9415748 stop_gained p.Leu76*
C/G 9415756 missense_variant p.Leu79Val
T/G 9415757 missense_variant p.Leu79Arg
G/A 9415762 missense_variant p.Ala81Thr
C/G 9415884 missense_variant p.Cys94Trp
G/T 9415907 missense_variant p.Gly102Val
C/T 9416011 missense_variant p.Arg137Cys
G/A 9416035 downstream_gene_variant
G/A 9416076 downstream_gene_variant
T/A 9416078 downstream_gene_variant
G/A 9416165 synonymous_variant p.Leu157Leu
A/C 9416385 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34188.1
MSGLVFLSVLFLLLQLPLSSLSNSESDALYAFRKGLSAPDHIFDSWDPSNVDPCTWFHILCDSNNHVVRIDLYNYNIVGTLSPELGRLPYLQYLMLNGNKLSGKIPPELGNLGNLRSMDLSDNQLEGNIPVSFGNLKSLKFLWLQNNKLTGSIPKEVIDLHLPVFNVSGNHIHGADGNIPRKINFLMI*


CDS Sequence:
>Vu_34188.1
ATGTCTGGTTTGGTTTTTCTATCAGTGTTATTTCTGCTTCTCCAGCTTCCTCTGTCATCGCTCTCAAACTCTGAAAGTGACGCTCTCTATGCTTTCAGAAAAGGTCTTTCTGCTCCCGACCACATATTTGACAGTTGGGACCCCTCCAATGTAGATCCTTGTACTTGGTTTCATATATTGTGCGACTCCAACAATCACGTGGTTCGCATAGACTTGTACAATTATAACATTGTTGGAACTTTGAGCCCAGAACTTGGCCGTTTACCCTACCTTCAATACCTGATGCTGAATGGGAATAAACTATCTGGGAAGATTCCTCCCGAACTAGGCAACTTGGGCAACCTTAGAAGTATGGATTTGTCTGATAACCAATTGGAAGGGAACATCCCAGTGTCGTTTGGCAACTTGAAATCGCTTAAATTTCTATGGCTACAAAACAACAAGTTGACAGGATCCATCCCAAAAGAGGTCATTGATCTTCATCTCCCAGTCTTTAATGTATCTGGTAATCACATCCATGGTGCAGATGGCAACATCCCCAGGAAGATAAATTTTCTCATGATATAA


Promoter Sequence:
>Vu_34188::LG10:9413133-9415133(+)
GAATATAATGCAGCATCTAAAAATAATAATAAAAAAAATTATAATGACAAAAGTAATTAATTAATATTAGTATTATTTTTTTATAATTCAATATTTAATTAAAATTATTTCTAAACAACAACATTTTATTTTAAATTAATTACATCTCTTATTTTTTTTTTTACAGAAAAATCATCCAGGTTTTATTTTAAACTAATTTTAAATAATTGTAATTTATCTTTTATTAATTTATATAATCTTATCATTTAATTTATTCAATTTTTTTTATCTATTACTTTCATCAAATTATTCACAAAATTTTATAGTTGTTTCCAAATCTTTTAAAAAGAAAACCTTACTTCATCTTTCATTTTTTCCTCAAATTCTTTCATTGAATCTTCTTCAGATCATCTCCCTCAAAAGTAACAGAGCAAGACTTTGTTCACTTCGATGGATTTGGAGGAGAGTGATTGAAGGGATTTCAGAGAATTTGAAAATAAATTTTTGTTGTTGTTTATTTGGGTAGATTTGAAAGTAAATGAGAATGAATTTGGAAATAAATTTTTCTAATATGTCACATCAATCAAATCTTATACTAATTCTCACAAATTTTATTTCCAAATCCATTCTCATTACTTTCAAATCCACTCAAATAAAAAACAAAAAAATTTACTTTTAAATCATCTCAAATCCTTTCAATCACTCTTCTTCAAATCCATTTAAGTGAACAAAATCTAAATGATACCATATTATACCTGTATCAATATCAGTAAAATGAGATACGTTGTTACTTGTGACATTTTGAAAATGATGATAATGAAACATATCCTTAAATAGGTGTAAACAACATTTTATGTGTGAAATAACATATCATTGGTCCAGTAAGTTTTGTAACTGTGTAGTTTTCAAATTTCAATAAATTTTGAAACGAACTGTCACATTCTTTTCTCTACAGCTAAGGAAATAAATAAATAATTTTCGAAAAAGTTAGTAGCTATTATTTACAGAGTGTTAAAATAGTAAAGTTTTCAATATATTGAATTTATAATTTTAATTTTTTCTTTTTGTATTATTTTAACTTTCTTTCCATTCCAACTTGTTTTATTTAACAAAATTCAATTTTTATATATTTATTATGTAAATAATAATTAATATTCAAAGAGTGCTCCTCTGTTCTCATTTAATAGCAGTGAAATTTATTTCTTTTAATCTGCACTTTTAAAATTAGGATAACAATATTTTTTTTTCAAATATGACTTATTTATATTTTAGTTGTATTTAATATTATTTGGAGAGAGAAAAATAAAAAAAAATATAATATACAACTTATTTAAAATTAAAAATAGAGAAAAGTTAATTTATTTTTATATTTGAGTCCAGAGCAAGAAAGAGGTATTATACTTCCTCTGTCTGTACATAACAGTTATTTATTAAAGAAAAGTTGTTCCTTTTCATTTATTGTTTTTAAAATTTTAAGATAGTGTAAACTTTTTTTTCCCAATTATACTCTTTTTTCCATTTTTATTATGGATGGAAAATTATTTAAAGAGAGAAAAATGAAAAGTTATAACATACAACGTATTCAAAATTGTACTAAAAAAAATTAAATAGTTTCTTTGACTTTGGTTAAAGAAGTCAAACAACTCTTATATAGAAACATAAACAAAAGTGTATCTGCATTAATGACCTTTAAAACATTTTTGTCAATATTCATTAATAAAAATATTCAATAGAAGAAAAATATTGTAACTATAAATACAAAGAAAATATTATGTGAAAAAATATCTTGTAATTAATTCAGAATTAATTATATTAAATATATTAACCAATAAAACATTGATACATAATCTGTTATAAAAAAATTATCAAAAAAATTATTAAAATAATATTTTTCTTTATTTACATGTTTTTAATTAATAACATACCTATGTATATATATATATATATGTCAGGAAATCATCATCTCTCAAAATACATAGAAAAGTGAATCATCGAGGTTATCCAGTCACACATAGGAAAAA


Gene Sequence:
>Vu_34188(+)
ATGTCTGGTTTGGTTTTTCTATCAGTGTTATTTCTGCTTCTCCAGCTTCCTCTGTCATCGCTCTCAAACTCTGAAAGTAAAATATCTCTATTCATTTATTCTTTTCCAAATTTTCGTTGGATAATTAAAACAAACATCACTTTCAGATTATGATTTCGAGTATACTTTTATCTGCAGGTGACGCTCTCTATGCTTTCAGAAAAGGTCTTTCTGCTCCCGACCACATATTTGACAGTTGGGACCCCTCCAATGTAGATCCTTGTACTTGGTTTCATATATTGTGCGACTCCAACAATCACGTGGTTCGCATGTAAGTTGCAACATTTACTTCTTTTTTTGCCATAGTTTTTAGTCTTCGTACAAACAAAATTACACATCAGATAAAATAATACACATGACATACCTCTATTAGGAAAAGATTTATATACACATAACATATTGTAAGTCTTTATGTATGTATTTTTGGTATCATTTTAAAAGATCCTGTACAAATGAAACTATATCTTACGTGTATATTTATCTTTTGTTTTATCTAATATAAGAATTTGATTGTATCAGTTTATGATTTAACTGTGTTTGTGGTTTGAATTTCAGAGACTTGTACAATTATAACATTGTTGGAACTTTGAGCCCAGAACTTGGCCGTTTACCCTACCTTCAATACCTGTAAGCATGTTTGGTTTATCTAATTTATTGGCTACATAAACATAAACATATAATTTGTGATTAATAAGGTCTTCATTGCAGGATGCTGAATGGGAATAAACTATCTGGGAAGATTCCTCCCGAACTAGGCAACTTGGGCAACCTTAGAAGTATGGATTTGTCTGATAACCAATTGGAAGGGAACATCCCAGTGTCGTTTGGCAACTTGAAATCGCTTAAATTTCTGTAATGTTTACGTTGGATGCTCAAAAGCTTAACCTTAGTTATCAAATCAAATGATGTCTGAATTGTGTTTTATTTTGCTTTCATGTATATAGATGGCTACAAAACAACAAGTTGACAGGATCCATCCCAAAAGAGGTCATTGATCTTCATCTCCCAGTCTTGTAAGATTCTCTTTCTGTGTGCTGGAAAATTCAAAATCAATTTCACTTTCTCATTTTATCATTGCTTTATCAACAAATTTCAAACCTCAATTTTGCAGTAATGTATCTGGTAATCACATCCATGGTGCAGATGGCAACATCCCCAGGAAGGTAATATAACCATTACAATTCTTAACAAAGATCATAAGCATGCCTAACATAATAATTGATTGTAATGAATTTTTAAAGATAAATTTTCTCATGATATAA

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1449823