Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_34144	LG10	8435312	8439055	hypothetical protein	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
T/G	8435347	synonymous_variant	p.Ser12Ser
G/A	8435830	synonymous_variant	p.Leu173Leu
T/G	8435849	missense_variant	p.Tyr180Asp
T/C	8435866	synonymous_variant	p.Ser185Ser
G/C	8435933	missense_variant	p.Gly208Arg
A/T	8435986	synonymous_variant	p.Ile225Ile
C/T	8436589	synonymous_variant	p.Pro426Pro
G/T	8436634	missense_variant	p.Met441Ile
G/C	8436635	missense_variant	p.Ala442Pro
G/A	8436670	synonymous_variant	p.Lys453Lys
T/A	8436675	stop_gained	p.Leu455*
C/T	8436727	synonymous_variant	p.Phe472Phe
A/T	8436823	missense_variant	p.Arg504Ser
T/G	8436829	missense_variant	p.Asp506Glu
A/G	8436858	missense_variant	p.Lys516Arg
A/G	8436890	missense_variant	p.Ser527Gly
G/A	8436926	missense_variant	p.Val539Ile
G/A	8437028	missense_variant	p.Val573Ile
A/G	8437066	synonymous_variant	p.Leu585Leu
T/A	8437099	synonymous_variant	p.Arg596Arg
T/C	8437116	missense_variant	p.Phe602Ser
T/C	8437133	synonymous_variant	p.Leu608Leu
C/T	8437150	synonymous_variant	p.Cys613Cys
T/C	8437184	missense_variant	p.Cys625Arg
C/T	8437244	missense_variant	p.Leu645Phe
C/A	8437253	missense_variant	p.Arg648Ser
A/G	8437257	missense_variant	p.Asp649Gly
T/C	8437258	synonymous_variant	p.Asp649Asp
C/T	8437263	missense_variant	p.Ser651Phe
G/A	8437284	missense_variant	p.Arg658Lys
T/A	8437296	missense_variant	p.Leu662Gln
G/A	8437343	missense_variant	p.Glu678Lys
A/T	8437504	missense_variant	p.Glu731Asp
C/G	8437513	missense_variant	p.Ile734Met
G/A	8437541	missense_variant	p.Gly744Ser
T/A	8437637	missense_variant	p.Tyr776Asn
A/C	8437645	missense_variant	p.Lys778Asn
C/A	8437647	missense_variant	p.Ser779Tyr
T/A	8437653	missense_variant	p.Phe781Tyr
A/G,C	8437658	missense_variant	p.Lys783Gln
A/G	8437671	missense_variant	p.Asn787Ser
C/G	8437711	synonymous_variant	p.Leu800Leu
G/T	8437757	missense_variant	p.Ala816Ser
A/G	8437819	synonymous_variant	p.Leu836Leu
A/C	8437821	missense_variant	p.Tyr837Ser
C/G	8437822	stop_gained	p.Tyr837*
T/C	8437848	missense_variant	p.Met846Thr
G/T	8437861	synonymous_variant	p.Val850Val
T/A	8437873	synonymous_variant	p.Ala854Ala
G/A	8437880	missense_variant	p.Val857Ile
C/G,A	8437886	missense_variant	p.Gln859Lys
G/C	8437889	missense_variant	p.Glu860Gln
A/T	8437891	missense_variant	p.Glu860Asp
A/G,*	8437901	missense_variant	p.Lys864Glu
T/C	8437917	missense_variant	p.Leu869Pro
G/A	8437947	missense_variant	p.Ser879Asn
C/G	8437963	missense_variant	p.Asn884Lys
T/A	8437988	missense_variant	p.Ser893Thr
C/A	8437998	missense_variant	p.Pro896Gln
G/T	8438001	missense_variant	p.Arg897Met
A/C	8438019	missense_variant	p.Lys903Thr
G/A	8438023	synonymous_variant	p.Leu904Leu
G/A	8438072	missense_variant	p.Val921Met
C/T	8438204	missense_variant	p.Arg965Cys
A/G	8438247	missense_variant	p.Asn979Ser
A/G	8438250	missense_variant	p.Lys980Arg
C/G	8438257	missense_variant	p.Ser982Arg
A/G	8438306	missense_variant	p.Asn999Asp
C/G	8438344	missense_variant	p.Ile1011Met
C/T	8438348	missense_variant	p.Pro1013Ser
A/G	8438367	missense_variant	p.Lys1019Arg
G/A	8438410	synonymous_variant	p.Gly1033Gly
G/C	8438425	missense_variant	p.Lys1038Asn
T/C	8438440	synonymous_variant	p.Phe1043Phe
G/C	8438441	missense_variant	p.Val1044Leu
A/G	8438451	missense_variant	p.Asp1047Gly
C/T	8438549	missense_variant	p.His1080Tyr
C/G	8438564	missense_variant	p.Leu1085Val
G/A	8438583	missense_variant	p.Cys1091Tyr
T/G	8438584	missense_variant	p.Cys1091Trp
T/A	8438588	missense_variant	p.Tyr1093Asn
G/A	8438672	missense_variant	p.Glu1121Lys
T/C	8438702	missense_variant	p.Ser1131Pro
G/C	8438704	synonymous_variant	p.Ser1131Ser
A/G	8438748	missense_variant	p.Asn1146Ser
C/T	8438787	missense_variant	p.Ser1159Phe
C/T	8438845	synonymous_variant	p.Gly1178Gly
C/T	8438890	synonymous_variant	p.Cys1193Cys
C/A	8438908	synonymous_variant	p.Ile1199Ile
T/G	8438911	synonymous_variant	p.Ala1200Ala
A/C	8438917	missense_variant	p.Glu1202Asp
T/A	8438922	missense_variant	p.Leu1204Gln
G/T	8438927	missense_variant	p.Val1206Phe
T/G	8438952	missense_variant	p.Met1214Arg
G/C	8438953	missense_variant	p.Met1214Ile
A/G	8438974	synonymous_variant	p.Lys1221Lys
C/T	8438980	synonymous_variant	p.Cys1223Cys
G/C	8438984	missense_variant	p.Val1225Leu
A/C	8438993	missense_variant	p.Ser1228Arg
C/G	8438996	missense_variant	p.Gln1229Glu
T/C	8439007	synonymous_variant	p.Pro1232Pro
G/C	8439034	missense_variant	p.Lys1241Asn

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_34144.1

MALAVVGGALLSAFIDVLFDRLASPEFVNLIRGKKPDKLLQKMKSQLLVVKVVLADAEKRQITDSNVKEWLDLLNDVVYRADDLLDEVYTKAATQKEVSSSFSHLFKRNKVVNVSKLEDIVERLDDILKQKESLDLKEIAVENNQPWNAQTTSLEDRYGMYGRDEDKEAIMKLLLEDSSYGEEVSVIPIVGMGGVGKTTLTRSVYNDGKLNEIFNMKAWICVSDIFDIVKVTKTMLEEITQKPCKLSDLNLIQLDLLEKLKGKKFLIVLDDVWIEDCDSWSSLTKPFLSGISGSKVIVTTRNERVAAVVPFHYVKVYHLNKLSNEDCWLVFASHALPLSEDSENRETLEKIGKEIVKKCNGLPLAAQSLGGMLRRKHEIKDWNDVLESDIWELPESQCKIIPALRISYNYLPPQLKRCFVYCSLYPKDYEFQKHDLILLWMAEDLVKASKKGKTLEEVGQDYFDDLVSRSFFQCSSSRDWGNYFVMHDLMHDLATFLGGEFYFRADEHGKETKIDKKTRHLSFTRFSDSVSDSEVLDRVKFSRTFLPTYDDYSPFKNRNTPCIIVSMLKYLRVLSFSNLQCQLVLPDSIGELIHLRYLDLSFTGIETLPESLCNLYNLQTLKLSCCFRLTKLPSAMQNLENLRHLEIRDSSIKEMPKRMGKLNQLLTLDLYIVGKHKENSIKELGGFPNLHGRVSIEKLENVTNGEEAFEARIMDKKYINSLELQWSLCDESSIDFQIELDVLGKLQPHQDLKSLSIKGYKGKSFPKWMDNFSYRYMKSLFLKNCNNCCMLPSLGQLPSLKHILISKMNSVKTIDAGFCKKEDCSSMAPFPSLESLYIFNMPCWEMWSSVDSKAFPVLQELYIKNCPKLKGDLPNHLPSLQTLNIKSCQLLVSSFPRAPALRKLKICESNKVELHAFPQSVESINIKGRPMVESMMEAITAIQPTCLKDLSLSDCSSAISFPGNRLPSSLKKLYISGLNKLSFPMLHKHKLLESLSINNSCDSLKSFPPAIFPNLTRLKIENCENLESLLVSGPESLKSLNSFVIGDCPNFVSFPVEGFSAPNLTRFSVYDCAKLKSLPHQMGTLLPKMECLYISNSQQIECFPEGGMPPNLTTLEIRNCEKLLISLGWISIDMVTSLEVYGPCDNINAFPKEGLLTPSLTSLYLIDFSSLDTLDCKGLLHLTSLQTLLIKNCKKLKNIAGERLPVSLVKLIIMECPLLQKRCHVKDSQIWPKICHVRGIKIDGRWI*

CDS Sequence:
>Vu_34144.1

ATGGCATTAGCTGTTGTAGGTGGTGCACTCCTTTCTGCTTTCATTGATGTTCTTTTTGACCGGCTAGCTTCCCCTGAGTTTGTCAACCTCATCCGTGGAAAAAAGCCTGACAAATTGCTTCAAAAGATGAAGAGCCAGCTGCTTGTGGTTAAAGTTGTGCTTGCTGATGCTGAGAAGAGACAAATCACCGACTCCAATGTCAAAGAATGGCTCGATCTTCTCAATGATGTTGTCTACCGGGCTGATGACTTACTTGACGAAGTTTATACTAAAGCTGCTACTCAAAAGGAGGTAAGCAGTTCCTTTTCTCACCTTTTCAAAAGGAACAAGGTTGTTAATGTTAGTAAGTTGGAAGACATTGTTGAAAGATTAGATGATATTTTAAAACAAAAGGAGAGTCTCGATTTGAAGGAGATTGCGGTGGAGAACAATCAACCATGGAATGCTCAGACAACATCTCTGGAAGATAGATATGGTATGTACGGTAGGGATGAAGACAAGGAGGCCATAATGAAGTTGTTGTTAGAGGATAGTAGTTATGGTGAAGAAGTGTCTGTAATCCCTATTGTAGGCATGGGTGGGGTTGGGAAAACAACTTTGACCCGATCTGTGTATAACGATGGCAAGTTGAACGAGATATTCAACATGAAGGCATGGATTTGTGTTTCTGATATATTTGATATTGTGAAAGTCACAAAAACTATGCTGGAGGAAATTACTCAAAAGCCTTGTAAATTGAGTGATCTAAACTTAATTCAACTTGACTTGTTGGAAAAACTGAAAGGTAAAAAATTCTTGATTGTCTTGGATGATGTTTGGATCGAGGATTGTGATAGCTGGAGTAGTCTTACAAAACCATTTTTAAGTGGAATTAGTGGAAGCAAAGTTATTGTGACAACCCGCAATGAAAGGGTAGCGGCTGTAGTCCCTTTTCATTATGTTAAAGTATATCATCTAAACAAATTGTCAAATGAAGATTGTTGGTTGGTGTTTGCAAGCCATGCATTACCCCTCTCAGAAGACAGTGAGAATAGAGAGACTCTAGAAAAGATTGGAAAGGAAATTGTTAAAAAGTGTAATGGCTTGCCTTTAGCTGCACAGTCTCTGGGAGGAATGTTGAGAAGAAAGCACGAAATCAAGGATTGGAATGATGTACTTGAAAGTGACATTTGGGAACTTCCCGAAAGTCAGTGTAAGATTATTCCAGCACTCAGAATTAGTTATAATTATCTCCCTCCACAATTAAAACGGTGCTTTGTTTATTGCTCATTGTACCCCAAGGATTATGAATTTCAAAAACATGATCTGATCCTGCTCTGGATGGCTGAAGATCTTGTAAAAGCATCAAAAAAAGGAAAGACTTTAGAAGAGGTTGGTCAAGATTATTTTGACGATTTGGTTTCGAGATCGTTTTTCCAATGTTCAAGTTCTCGGGATTGGGGTAATTATTTTGTGATGCATGACCTGATGCATGATCTAGCAACATTCCTTGGCGGGGAATTCTATTTCAGAGCAGATGAACATGGAAAAGAAACCAAAATTGATAAAAAGACTCGCCATTTGTCTTTTACAAGATTCAGTGATTCGGTCTCCGATAGTGAAGTTCTTGACAGGGTAAAATTTTCGAGAACTTTCTTGCCGACCTATGATGATTATTCTCCCTTTAAAAACAGAAATACACCATGCATTATAGTGTCGATGCTCAAGTACTTGAGAGTTTTATCATTCTCCAACTTACAATGTCAGCTTGTTCTACCTGATTCAATAGGTGAATTGATCCATTTGCGTTATCTAGATCTCAGTTTTACAGGTATAGAAACTTTGCCAGAGTCATTGTGCAATTTGTATAATCTACAAACTTTGAAGTTGTCTTGTTGCTTTAGGCTGACGAAGTTGCCTAGTGCCATGCAAAATCTCGAAAACTTGCGTCATCTTGAAATTCGTGATAGTTCCATAAAAGAGATGCCTAAAAGAATGGGGAAACTAAATCAATTATTGACCTTGGATTTATACATTGTGGGCAAGCATAAAGAGAATAGCATCAAAGAACTGGGAGGATTCCCAAATCTCCATGGCAGGGTTTCTATTGAGAAATTAGAGAATGTTACTAATGGTGAAGAAGCATTTGAAGCCAGGATAATGGATAAGAAGTACATTAATTCTTTAGAGTTGCAATGGTCTTTATGTGACGAAAGTAGCATCGACTTTCAAATTGAATTAGATGTACTTGGCAAGTTACAACCTCACCAAGACCTGAAATCCCTTTCAATAAAGGGTTATAAAGGAAAAAGTTTTCCCAAATGGATGGACAATTTTTCTTACCGCTACATGAAATCTCTGTTTTTAAAAAATTGTAACAATTGTTGTATGCTTCCTTCACTTGGGCAACTACCGTCTCTCAAGCACATCCTTATTTCAAAGATGAATTCGGTGAAGACTATTGATGCAGGCTTTTGTAAGAAGGAAGATTGTTCATCTATGGCACCCTTTCCCTCCCTTGAATCTCTATACATTTTTAATATGCCTTGTTGGGAGATGTGGAGTTCCGTGGATTCAAAAGCTTTTCCTGTTCTTCAGGAACTTTATATAAAAAATTGCCCCAAACTAAAGGGAGATTTGCCAAATCACCTTCCTAGTCTGCAAACACTCAACATTAAAAGTTGCCAGCTTCTTGTCTCTTCATTCCCAAGGGCTCCCGCCCTTCGAAAATTGAAGATATGTGAAAGCAACAAAGTGGAGTTACATGCGTTTCCTCAATCGGTGGAATCTATAAATATAAAAGGAAGACCAATGGTGGAGTCCATGATGGAGGCCATCACTGCCATCCAACCTACTTGCCTGAAAGACTTGTCATTAAGTGATTGTTCGTCAGCCATATCTTTTCCAGGTAATCGTCTTCCTTCATCACTGAAAAAACTGTATATCAGTGGCTTAAACAAACTGAGCTTCCCGATGCTACATAAACATAAATTACTGGAATCCCTGTCAATAAATAATAGTTGTGATTCACTAAAGTCTTTCCCACCGGCTATCTTTCCAAATCTCACCCGTCTTAAAATCGAAAATTGTGAAAATCTAGAATCTCTTCTGGTCTCAGGGCCAGAGTCGTTGAAGAGCCTGAATTCTTTTGTGATTGGGGACTGCCCCAACTTTGTATCATTCCCAGTAGAAGGATTTTCTGCGCCCAATTTGACTCGTTTCAGTGTTTATGATTGTGCCAAGTTGAAGTCATTGCCGCATCAGATGGGAACTCTTCTCCCAAAGATGGAATGTCTTTACATATCCAACAGCCAACAAATTGAGTGTTTTCCTGAAGGGGGTATGCCACCTAACTTGACAACACTTGAGATCAGGAATTGTGAGAAACTACTTATCAGCTTAGGATGGATATCGATTGACATGGTTACCTCTCTCGAAGTTTATGGTCCATGTGATAACATCAACGCCTTCCCAAAGGAGGGATTGTTGACTCCCTCCCTTACGTCTCTGTATCTAATTGATTTCTCAAGTCTGGATACGTTGGACTGCAAGGGCCTTCTCCATCTCACGTCCCTGCAAACATTACTCATTAAAAATTGCAAAAAACTGAAGAATATCGCTGGAGAAAGGCTGCCTGTCTCTCTAGTAAAATTAATAATAATGGAATGTCCCTTGCTGCAAAAACGATGCCACGTAAAGGACAGTCAAATTTGGCCTAAAATCTGCCATGTCCGTGGTATAAAGATTGACGGTAGATGGATTTAG

Promoter Sequence:
>Vu_34144::LG10:8433312-8435312(+)

AAGCTGTGTTGTGAATTTTATTATAATTAATTCAATATTCTCATATTTTGGCTAGACTCCATGTCTCTTTTGTTGTGTTTCAGACTTTATTACAATACTGCTTTATTAAATGTTATAAGTTTTTTTCTCTAAAAAATTGATAAAATTAATAAATAGATTATAGTCAATAACTATATTAAACTATATATTATATATTTTATTTAATAACATATTAATAAGTAGGATATAAAAAATATTGATTTAAATATAATAAAATTTTAATATATTAGACAATTTAATAAAATACATATTTTTATATGTGCATATAAATGATATTGTATTTAAAAGTTAATTAAAGTTTTGAAATATGGTCAAACTTATCTTAATCCTGACTCTAACTCATTTAAGGAGAGTTTAGAGATTTAAGTGTTTTTTTGGTTTCCAGAGCTTTTTAAAAGAGAATTTTTTTCAAGGATAAACTAGAACTTACTTACAGGTCATAGTGAAGTTGACAATTCTAACTTTAATTGACAATAAAATTATTGTTAGTAGAAGCGAAAGTAAAATATTTGCAAGTGCAACGGGGGAGGACAAAATTCTTGCATCACTTAGGAAGAAGCTGCAGAATTGTACAAAAGCCTACCTTATTAAATTCAACTTTGAGGACAAAGTTGTTTCATGACCATGACCAGGGTAATGTTATGAAGAAAAATAAGACTCTTGACATGGAAGGTCTAGTGCACAAAGAGACAAATTCCAAATTAATTACAAAGAATGTACAGGTGGCTACCACATTTCAAATCATGGAGTCAAGGAGGAGTAACACAGAGTCAAATTCCATGCTACAGGATTTTTTCAGTTAGGCAATTTGGTGTAATTCTCTCCCCTCTCTGAATTCTATCTCTTCCTCTATGTTTCTAGAATCCTTTTTTAATATTTCATTTCCTCTCAGGTGTGATGGCAAGAATGGAATCCCGACTCTGACATCCTTTTAGCATCACTCCATTCCTTACATTTCAGTTTTATAGTGAATCTTATACACTAATTTAGTATTGTTGGATGATTAGAATATAATATTGTATGAAGCTTTTCCCAACAATAAATAGCACTGTTAAAGGTAAAGTAGATGTTCCTCGTATCAAATGAGATTAATGACCATACTGTTAAAGGTAAAGTAGATGTTCCTCGTATCAAATGAGATTGATGATCATAATACAATTGTAAGAATCATTTAAAAGTTGAGTTTGTTGGGAATATAAGTGTAATTCAAGTCTTATATTAAAAAAAATCTTATATTAAAAAAAATGTAAAAGTAAAACAATATCTAAAGAGTGCTATCAATTTTTTATGTAGTTGATTCAAATCTTTGTGTAAAAAGAAAAGAAGATGCAAGTATAAAGAGACTATAGTGCCACCTCAGTCCCCAGTCTCCTAAACTAAACATGCCAAGCAAGTTCTCCATCCTCCAAAGTTTTGTCTTTGGCATATCGTATTTAATTTGCTATATCTTTCACATTGTTAGTGAATAATGGCTACATACATTGTGTCATCAACAATAGTTGGCCGTTACAAACAATATTACTCTGTTTCATCAATTTTTTCATAAACACTGAAAGAATGAAAAAGTAGATATACTGAATATCTTTAATTAATTCAAATCAACTTATTCAATCTCAACCATTGATTTTTTAATTAATACATCCATGGTGGATTTAGATGGTGGGTACATTCCCTCTGATTCCACGTTAAAAAAGCATCGAAACATGAACCTTATCTTTGAATTCGCGACACCACCAACCCAACATTAGGCACCATCGATCTCTACCATCCAATTTTGAACTAATATATATCTGACGGTTAATTTTGAGGATATGTATTTCACATAGCTACGCAACTTAAAGTGAAGAGGGTTGACTGAAATTCCTTTCCTTTCTGATCTCATCTGTCAAGAACCCATCCAAATTACTGCAACCGATTCCTTTCCTTTCTGAGAAATAATCACTTGTTTGTTGTTGAGATCA

Gene Sequence:

>Vu_34144(+)