People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34130 LG10 8111339 8114217 probably inactive leucine-rich repeat receptor-like protein kinase IMK2
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/A 8112285 missense_variant p.Ala288Asp
G/A 8112305 missense_variant p.Ala295Thr
C/T 8112395 missense_variant p.His325Tyr
A/G 8112396 missense_variant p.His325Arg
T/A 8112403 synonymous_variant p.Leu327Leu
C/T 8112723 intron_variant
C/T 8113265 missense_variant p.Ser530Phe
C/T 8113340 intron_variant
C/T 8113343 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34130.1
MPKISSQTLFRLTSLLLHMVIGGGTTKGSCGMGWLLLRLIFQALRAIKNELIDFKGVLKSWNDSGLGACSGWAGIKCVNGEVIAIQLPWRGLGGRISEKIGQLQSLRKLSLHDNVLAGPVPLSLGLLPNLRGVYLFNNKLSGSIPPSLGNCPMLQSLDISNNSLSGKIPPSLARSTRMLRINLSFNSLSGSIPSSLTMSPSLTILALQHNNLSGSIPDSWGGAGKKKASQLQVFTLDHNLISGIIPVSLGKLALLENVSLSHNLIVGPIPSELGALSRLQILDLSNNAINGSIPASFSNLSSLVSLNLNSNQLANHIPDSLDRLHNLSVLNLKNNKLDGEIPPTIGNISSISQIDFSENKLVGGIPDSFTKLAHLSSFNVSYNNLSGPVPSLLSKRFNASSFVGNLELCGRRTASSRKSGKAAKAAASARSLEKGASAGGEVEAGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGNQVAVKRHPNLLALRAYYLGPKGEKLLVFDYMTKGSLASFLHARGPEIVIEWPTRMKIMIGVTRGLSYLHSQENIVHGNLTSSNILLDEQTEAHITDFGLSRLMTTSANTNIIATAGSLGYNAPELSKTKKPNTKTDVYSLGVIMLELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMRDAPAIGDELLNTLKLALHCVDPSPAARPEVHLVLQQLEEIKPDLAAGDDGATKVQTTE*


CDS Sequence:
>Vu_34130.1
ATGCCAAAGATTTCTTCACAGACCCTTTTCAGGTTAACCTCTCTTTTGCTTCATATGGTCATAGGAGGAGGAACCACAAAGGGCAGTTGTGGGATGGGGTGGTTGTTACTCAGGCTGATTTTTCAAGCCCTGAGGGCTATTAAGAATGAGCTAATTGACTTCAAAGGGGTTCTCAAGAGCTGGAATGACAGTGGTCTAGGTGCTTGTTCTGGGTGGGCAGGAATCAAGTGTGTGAATGGTGAGGTTATTGCAATTCAGCTTCCTTGGAGAGGGTTAGGTGGCAGGATCTCTGAGAAAATTGGCCAACTTCAGTCTCTTAGGAAGCTCAGTCTTCATGACAATGTTCTTGCTGGTCCAGTTCCTTTGTCACTTGGCCTCCTTCCCAACCTTAGAGGGGTTTATCTCTTCAATAACAAGCTTTCAGGTTCTATCCCTCCTTCCCTTGGCAATTGTCCAATGCTTCAGTCTCTTGATATTAGCAACAATTCCCTCAGTGGTAAAATCCCTCCCAGTTTAGCGAGATCTACTAGGATGCTTCGGATCAATTTGAGCTTCAACTCACTTTCTGGATCCATTCCTAGCAGTTTAACCATGTCTCCTTCTCTAACCATTCTTGCCCTTCAACACAACAACCTCTCTGGCTCTATCCCAGATTCTTGGGGTGGAGCTGGAAAGAAGAAAGCTTCCCAGCTTCAGGTTTTTACCCTTGATCACAATCTCATTTCTGGAATCATCCCAGTTTCTCTAGGCAAGCTAGCTTTACTTGAAAATGTTTCTTTGAGTCATAACCTGATTGTAGGGCCTATTCCAAGTGAACTAGGAGCACTTTCTAGGCTTCAAATTCTTGATCTTTCAAACAATGCCATCAATGGCAGCATTCCTGCTAGCTTCTCTAATCTCTCTTCTCTAGTTTCATTGAACCTAAATAGCAATCAACTTGCAAACCATATTCCCGATTCTTTGGACAGGTTGCACAACCTTTCTGTGCTTAACCTGAAGAACAATAAGCTTGATGGCGAAATCCCACCAACAATAGGGAACATCTCAAGCATTAGCCAAATTGATTTCTCTGAGAACAAATTAGTTGGAGGAATCCCAGATTCCTTTACTAAACTTGCGCATCTCAGTTCATTCAACGTCTCTTACAACAACCTATCTGGTCCTGTCCCATCTCTACTTTCCAAAAGATTCAATGCTAGCTCTTTTGTAGGGAATCTTGAGCTATGTGGGCGAAGAACTGCTTCAAGCAGAAAGAGTGGCAAAGCTGCTAAGGCTGCAGCATCTGCTAGGAGTCTTGAGAAAGGTGCTTCAGCTGGTGGTGAGGTTGAAGCAGGAGGTGAAGCTGGTGGGAAACTAGTTCACTTTGATGGGCCTTTTGTGTTTACTGCTGATGATCTTTTGTGTGCAACTGCGGAGATAATGGGAAAAAGTGCATATGGAACAGCATACAAAGCAACACTGGAAGATGGTAACCAAGTTGCTGTGAAGAGACACCCAAATCTCTTAGCACTTAGAGCCTACTATTTAGGACCAAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGACAAAAGGAAGTCTAGCATCATTCCTTCATGCTCGTGGGCCTGAAATTGTTATTGAATGGCCAACAAGGATGAAGATAATGATTGGAGTGACTAGGGGCTTGAGCTACCTCCATAGCCAAGAGAACATTGTTCATGGGAACCTCACATCAAGCAATATACTATTGGATGAGCAAACAGAAGCCCACATAACAGATTTTGGTCTCTCAAGGCTGATGACAACTTCTGCCAACACCAACATCATTGCCACTGCAGGAAGCCTTGGCTACAACGCACCAGAGCTTTCAAAGACCAAGAAGCCTAACACAAAGACTGATGTGTACAGTCTTGGTGTTATCATGTTGGAACTCCTAACTGGAAAGCCACCTGGGGAGCCAACCAATGGCATGGACTTGCCCCAATGGGTTGCCTCCATAGTGAAGGAAGAGTGGACTAATGAAGTGTTTGATTTGGAACTCATGAGGGATGCACCAGCCATAGGGGACGAACTGCTTAACACATTGAAATTAGCACTGCATTGTGTTGATCCATCTCCTGCTGCTAGGCCTGAAGTACACCTAGTTCTGCAGCAACTGGAGGAGATCAAACCAGACTTGGCTGCAGGGGATGATGGAGCTACCAAGGTTCAAACAACTGAGTAA


Promoter Sequence:
>Vu_34130::LG10:8109339-8111339(+)
CTCCTCCTCACATAACATCATTGTTTATAATTGAAAAAAATATTTACTTTTTTTTCCAACTTATATTAAAAATAACTCAAAGACGAAAGTAAGAAAAGAGGTTTTTTTTTCAATTTTTTAAAACCAGTTTGTCGAAATATAGAAAAATTGTTTAGAAGTAATTATTTTATCAAGAAAATAATTTTTTCGGATTTTTTTTAAACAAACATAACTATTAGAAGAATTAAAAGTAAAATCTATATATGGGTATCTGATAATTAAGCATGGCCAAAGGTGTTACTAGTCATATTTGCATTTTGACTTGAATTGGAGCAGCGAGTTAATAATTAGAAGAGAAAATTGTTCCTATGACCTTTTTCTTGCATAAGGAAATGGGAAAATTTTCTACCTGAATACCAAAATAGATCACTCTTTTCCTCTAATACTACAAGTTAGTTGACATTTTTTTAAAGTTAAACTTATTTCCATTTTTACAAGGAAAATAATAGTTAAATATAATCATTGAGATTGACAAAGTTTCTCTAATTAACTATTTTAAAATTACTTTTCATCAATTAAATTCAAGCAGATAATGTTCTCAGTTTAGACATGCAATTAATTACTGAAGTGATTTAATTTTAACTGTTACTGTAGTGTCTTTAAGAACTTATTTAACGTGTAGCTTAAAAAATTAATAGATATTTTTTTAACAATGAATATAAATGTAAAGTAATGTTGAAGCTATAAACACTATCACTATCTAGCTTTTGCATCTCAAAATTTTGTTTGTTAGTTGGAAAAGTCGAACACAATGCCTTAATCCTCAATTAATCCTCTTAATTCTTGAATTTCTTCTAGTTTACTTCTTCCCCGTGCTGTTTCCAAAACATAATAAAATCAATTCGTTGCAACAAAATAATGAATGTGACACTGACACCCCAATATACTTTTGCCCCAACTAACACAATTTACAACTCTTGTTTGTTTTGTGCTCCACCTTTTCAAGCTAATAATGTGTTCTATACCACAGATCTGTGAATTATGAAAGCATAAGGTGCACAATCTGTCACTTTGATGTCCCTATTCGCAGTACATTACACACCATTGCCAGAAAGATGCCCTAGATAAACACCTTCTTTATGACCCAAAATAATCACAAAGTAAAAGAAGAAAAACATAGTTTCATCTGTTCTCACTTTTGCCCTCAACAAGCTGCATCTTTAGATGGATACTTAAGTTTAGTTCACTTAATTATGTTGTCATATATGATTTTTAAAATATCTAAAATTTATCATTTTAAACATTTTTTTTTTAGTTTTTTATTTATTTTTTGTTAACTGCAGCTTGTGGGTTGTGGGGTTTACAACACTCACTCATGGAAGGGTAGTTTAGGTAATTAAAGTTTTTGTCTTTTGTGACATATTTTCTGAGAATATAATAATGTTGATGATGAGGAGTCACACTGAGGAGTAGAACGAGGAAAAGAATGGGACCCTTAGAAAATGTAATGCATCCAAAACCAAATCCAATGCAATGTAGCCGTTGGAGAAGGAAACCCCATATCACATCTCATCTCTGCTTGGTCTTCTAATGTCCCAACCCAACCCGTTATGCAGCAGCAGTTATGATAATTTAGACAATGAAGTAAAACTAGCCGTTAGGATTAAGAAAATTGCAAGCTTTGACTCATTCTACTCATGACCACCACCTCATTTCATTTATCTCTCTTCATCCTTAAACCCCACCAGCACCTTTCTTCACTCACATGCCTTTTTCAGAACTGTAGTCCCTCTCTTTTCACTCTCCGCTTTCTTGTGTTAGTATTTAGATCTTCCTCGTTGTTCTTCATTGTACTAGTATTATACCACTACTACTGTTATCTGAGCTGAGTCTGTCTGAGAGGTGTGAACCTAAAGAGAGAGTGAAAGTGGAACCTGTTTGTGTCTGTCTTACTTTCTTTGCTTAGCCATTGTTTGTTCTAAGTTCCCACTTACCACTTTCATGGGACACAACAGTTGTCA


Gene Sequence:
>Vu_34130(+)
ATGCCAAAGATTTCTTCACAGACCCTTTTCAGGTTAACCTCTCTTTTGCTTCATATGGTCATAGGAGGAGGAACCACAAAGGTGTTGGGGGTGGTGGTTTTATTTGCTTAGCTTCTTTTGTGTTTCTTTTGCAAGCTTTGGCTTCTGTCATTCAGCCTGTTTCAGGGCAGTTGTGGGATGGGGTGGTTGTTACTCAGGCTGATTTTTCAAGCCCTGAGGGCTATTAAGAATGAGCTAATTGACTTCAAAGGGGTTCTCAAGAGCTGGAATGACAGTGGTCTAGGTGCTTGTTCTGGGTGGGCAGGAATCAAGTGTGTGAATGGTGAGGTTATTGCAATTCAGCTTCCTTGGAGAGGGTTAGGTGGCAGGATCTCTGAGAAAATTGGCCAACTTCAGTCTCTTAGGAAGCTCAGTCTTCATGACAATGTTCTTGCTGGTCCAGTTCCTTTGTCACTTGGCCTCCTTCCCAACCTTAGAGGGGTTTATCTCTTCAATAACAAGCTTTCAGGTTCTATCCCTCCTTCCCTTGGCAATTGTCCAATGCTTCAGTCTCTTGATATTAGCAACAATTCCCTCAGTGGTAAAATCCCTCCCAGTTTAGCGAGATCTACTAGGATGCTTCGGATCAATTTGAGCTTCAACTCACTTTCTGGATCCATTCCTAGCAGTTTAACCATGTCTCCTTCTCTAACCATTCTTGCCCTTCAACACAACAACCTCTCTGGCTCTATCCCAGATTCTTGGGGTGGAGCTGGAAAGAAGAAAGCTTCCCAGCTTCAGGTTTTTACCCTTGATCACAATCTCATTTCTGGAATCATCCCAGTTTCTCTAGGCAAGCTAGCTTTACTTGAAAATGTTTCTTTGAGTCATAACCTGATTGTAGGGCCTATTCCAAGTGAACTAGGAGCACTTTCTAGGCTTCAAATTCTTGATCTTTCAAACAATGCCATCAATGGCAGCATTCCTGCTAGCTTCTCTAATCTCTCTTCTCTAGTTTCATTGAACCTAAATAGCAATCAACTTGCAAACCATATTCCCGATTCTTTGGACAGGTTGCACAACCTTTCTGTGCTTAACCTGAAGAACAATAAGCTTGATGGCGAAATCCCACCAACAATAGGGAACATCTCAAGCATTAGCCAAATTGATTTCTCTGAGAACAAATTAGTTGGAGGAATCCCAGATTCCTTTACTAAACTTGCGCATCTCAGTTCATTCAACGTCTCTTACAACAACCTATCTGGTCCTGTCCCATCTCTACTTTCCAAAAGATTCAATGCTAGCTCTTTTGTAGGGAATCTTGAGCTATGTGGGTATATCAGTTCAAAACCATGCTCTTCACCCCCTCCTCATAATCTTCCAGCTCAATCACCACAATCTCTTTCTAACCCTCACCACCGAAAACTAAGCACCAAGGACATAATCCTCATAGTAGCAGGTGTTCTTCTGTTGATTCTGTTATTACTGTGCTGCTTTTTGTTGTGTTGTTTGATCAGGCGAAGAACTGCTTCAAGCAGAAAGAGTGGCAAAGCTGCTAAGGCTGCAGCATCTGCTAGGAGTCTTGAGAAAGGTGCTTCAGCTGGTGGTGAGGTTGAAGCAGGAGGTGAAGCTGGTGGGAAACTAGTTCACTTTGATGGGCCTTTTGTGTTTACTGCTGATGATCTTTTGTGTGCAACTGCGGAGATAATGGGAAAAAGTGCATATGGAACAGCATACAAAGCAACACTGGAAGATGGTAACCAAGTTGCTGTGAAGAGGTTGAGGGAAAAAAACTACTAAAGGGCAGAAGGAGTTTGAAACTGAGGTTGCTGCACTTGGCAAAATCAGACACCCAAATCTCTTAGCACTTAGAGCCTACTATTTAGGACCAAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGACAAAAGGAAGTCTAGCATCATTCCTTCATGGTAAGTGTATCTTTAAACTGACTCTGCCTTTGCTTCTGATACTGGTATTTGATATATCTAAACTTTACAACTGTAATTAGAATTTCGTTTCAGTAGAGTTTTTAAATCCTGTAATGTTGTGTCATTTCTTCTGATGCTGATATGATATATTTAAGATATGCATGAATTCTTCATGGTGAGTACTTGACAGTAATTAGAGAATATGTTGTGGCATTGCTTCTGAAATTAATAAATGAATTATTCCGGCATTGTAAGTACTAAAGAGTGATTATTTAGTGTTGTGTCATTGCTTCTGATACTGATTGTGTTATGATTTATCTGATTCTAACAAATGCAGCTCGTGGGCCTGAAATTGTTATTGAATGGCCAACAAGGATGAAGATAATGATTGGAGTGACTAGGGGCTTGAGCTACCTCCATAGCCAAGAGAACATTGTTCATGGGAACCTCACATCAAGCAATATACTATTGGATGAGCAAACAGAAGCCCACATAACAGATTTTGGTCTCTCAAGGCTGATGACAACTTCTGCCAACACCAACATCATTGCCACTGCAGGAAGCCTTGGCTACAACGCACCAGAGCTTTCAAAGACCAAGAAGCCTAACACAAAGACTGATGTGTACAGTCTTGGTGTTATCATGTTGGAACTCCTAACTGGAAAGCCACCTGGGGAGCCAACCAATGGCATGGACTTGCCCCAATGGGTTGCCTCCATAGTGAAGGAAGAGTGGACTAATGAAGTGTTTGATTTGGAACTCATGAGGGATGCACCAGCCATAGGGGACGAACTGCTTAACACATTGAAATTAGCACTGCATTGTGTTGATCCATCTCCTGCTGCTAGGCCTGAAGTACACCTAGTTCTGCAGCAACTGGAGGAGATCAAACCAGACTTGGCTGCAGGGGATGATGGAGCTACCAAGGTTCAAACAACTGAGTAA

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1322522