Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_34108	LG10	7738467	7741460	PREDICTED: receptor-like protein kinase	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/T	7738620	missense_variant	p.Phe947Leu
A/G	7738629	synonymous_variant	p.Phe944Phe
G/A	7738704	synonymous_variant	p.Asp919Asp
T/C	7738743	synonymous_variant	p.Pro906Pro
G/T	7738749	synonymous_variant	p.Pro904Pro
T/G	7738769	missense_variant	p.Thr898Pro
C/T	7738778	missense_variant	p.Gly895Ser
A/G	7738786	missense_variant	p.Phe892Ser
A/G	7738790	missense_variant	p.Ser891Pro
A/G	7738799	missense_variant	p.Phe888Leu
T/A,G	7738814	missense_variant	p.Thr883Ser
C/A	7738816	missense_variant	p.Gly882Val
A/T	7738819	missense_variant	p.Ile881Lys
G/T	7738823	missense_variant	p.Pro880Thr
A/G	7738824	synonymous_variant	p.Ile879Ile
G/C	7738873	missense_variant	p.Thr863Ser
T/C	7738880	missense_variant	p.Ser861Gly
G/T	7738882	missense_variant	p.Thr860Asn
T/A	7738883	missense_variant	p.Thr860Ser
G/C	7738887	missense_variant	p.Ser858Arg
C/G	7738888	missense_variant	p.Ser858Thr
T/A	7738893	synonymous_variant	p.Ser856Ser
A/G	7738896	synonymous_variant	p.Ile855Ile
C/A,G	7738905	synonymous_variant	p.Ser852Ser
G/A	7738906	missense_variant	p.Ser852Leu
C/T	7738916	missense_variant	p.Asp849Asn
G/A	7738923	synonymous_variant	p.Leu846Leu
G/T	7738938	synonymous_variant	p.Leu841Leu
G/T	7738941	synonymous_variant	p.Ser840Ser
G/A	7738950	synonymous_variant	p.Asp837Asp
T/G	7738965	synonymous_variant	p.Pro832Pro
A/C	7738968	missense_variant	p.Ile831Met
T/C	7738977	synonymous_variant	p.Ser828Ser
C/A	7738984	missense_variant	p.Arg826Leu
G/A	7738991	missense_variant	p.His824Tyr
C/G	7739018	missense_variant	p.Gly815Arg
T/A	7739022	synonymous_variant	p.Ser813Ser
C/T	7739032	missense_variant	p.Gly810Glu
C/G	7739100	synonymous_variant	p.Thr787Thr
G/A	7739125	missense_variant	p.Thr779Met
A/C	7739129	missense_variant	p.Phe778Val
T/C,G	7739139	missense_variant	p.Glu774Asp
C/A,T	7739160	synonymous_variant	p.Ser767Ser
G/C	7739167	missense_variant	p.Thr765Ser
C/A	7739183	missense_variant	p.Ala760Ser
G/A	7739199	synonymous_variant	p.Ala754Ala
G/A	7739213	missense_variant	p.Leu750Phe
G/C	7739241	missense_variant	p.Ile740Met
T/G	7739253	missense_variant	p.Lys736Asn
G/T	7739288	missense_variant	p.Gln725Lys
C/T	7739292	synonymous_variant	p.Leu723Leu
A/G	7739294	synonymous_variant	p.Leu723Leu
A/C	7739300	missense_variant	p.Leu721Val
A/G,T	7739301	synonymous_variant	p.Pro720Pro
C/T	7739311	missense_variant	p.Gly717Glu
T/C	7739325	synonymous_variant	p.Gln712Gln
G/A	7739358	synonymous_variant	p.Ile701Ile
A/C	7739394	missense_variant	p.His689Gln
T/C	7739395	missense_variant	p.His689Arg
C/T	7739405	missense_variant	p.Gly686Arg
G/A	7739407	missense_variant	p.Ala685Val
C/T	7739437	missense_variant	p.Arg675Lys
T/G	7739445	synonymous_variant	p.Ser672Ser
G/C	7739454	synonymous_variant	p.Gly669Gly
A/G	7739541	synonymous_variant	p.Asn640Asn
G/T	7739548	missense_variant	p.Ala638Glu
C/G	7739549	missense_variant	p.Ala638Pro
C/T	7739569	missense_variant	p.Arg631Lys
T/C	7739581	missense_variant	p.Asn627Ser
T/C	7739582	missense_variant	p.Asn627Asp
A/T	7739604	synonymous_variant	p.Val619Val
C/A	7739606	missense_variant	p.Val619Phe
A/T	7739636	missense_variant	p.Tyr609Asn
G/A	7739641	missense_variant	p.Ser607Phe
C/G	7739645	missense_variant	p.Gly606Arg
A/G	7739657	synonymous_variant	p.Leu602Leu
G/A	7739671	missense_variant	p.Pro597Leu
G/A	7739672	missense_variant	p.Pro597Ser
A/G	7739676	synonymous_variant	p.Ser595Ser
C/T	7739677	missense_variant	p.Ser595Asn
T/C	7739681	missense_variant	p.Ile594Val
A/G	7739697	synonymous_variant	p.Leu588Leu
A/G,T	7739701	stop_gained	p.Leu587*
A/T	7739702	missense_variant	p.Leu587Met
C/T	7739718	synonymous_variant	p.Leu581Leu
A/G	7739721	synonymous_variant	p.Ser580Ser
G/A	7739739	synonymous_variant	p.Pro574Pro
G/A	7739769	synonymous_variant	p.Leu564Leu
C/T	7739822	missense_variant	p.Glu547Lys
G/A	7739825	synonymous_variant	p.Leu546Leu
C/G,A	7739828	missense_variant	p.Asp545Tyr
G/C	7739850	missense_variant	p.His537Gln
A/G	7739868	synonymous_variant	p.Ser531Ser
T/C	7739888	missense_variant	p.Asn525Asp
A/G	7739892	synonymous_variant	p.His523His
A/G	7739901	synonymous_variant	p.Asn520Asn
G/A	7739908	missense_variant	p.Ser518Phe
C/A	7739922	synonymous_variant	p.Ser513Ser
A/G	7739928	synonymous_variant	p.Asn511Asn
G/T	7739933	missense_variant	p.Gln510Lys
A/T	7739969	missense_variant	p.Leu498Ile
A/T	7739991	missense_variant	p.Asp490Glu
G/T	7740941	missense_variant	p.Leu174Ile
G/T	7740943	missense_variant	p.Pro173His
A/T	7740971	missense_variant	p.Leu164Met
T/A	7740975	synonymous_variant	p.Thr162Thr
G/T	7740999	synonymous_variant	p.Ile154Ile

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_34108.1

MLGLPFTIVFLLTAAFAVLCSCGHAPLGCNEEERQALLRIKGSFKDPSSLSSWEGTSCCQWKGVGCNNLTGHVVKLDLRNPCYPLQGDFQPNCKFYDHVLEAQHVHPSILQLKYLSYLDLSGNRFHNTSIPAFIQTLQHLQFLYLSDSHFSGRIPYNLGNLTKLIILDLSFNPLLYADDFYWISQLSSLQYLYMSDVNLDKAQNLLQSLNMLPSLLEIDLRNCGLDKLHTHQHISTTNLSRLQDLNLAENGLKTSFLDAFQNMTSIAVIDLSHNNLNSTPFWLETCANLDSLFLDSNALYGSLPSALQNLTSLVYLDLSQNKFDSVPGWLGELKGLQYLSLSGNDINHIEGSLASLLGNCCRLQQLNMSRNKIQSDALGNHIEFECIRHHLILLDLSHNECNGHLPAWLEQLENLRSLIMTDSNLEGSLPCDILTKLVNLENLVLSNNNFTGSLPDCIGELVSLKILILSSNHFDGIIPRSLVQLVSLTDLDLSRNSLNGTIPHNIGQLQNLSTLYLSENKLHGNIPFSLSQLLNLHNLDISLNDLENLVSDIRWPRQLVYLNLTDNRISGSLPQNISDSLPNVGYLLLGNNLISGPIPNSLCRIGSLYNLDLSGNMLVGEIPNCWNVTQRLGVINLASNKLSGVIPSSLGNLPTLAWLHLNNNSLHGGFPSSLRNLNQLLILDAGENHLSGIIPSWMGNIFSSMQILRLRQNRLNGTIPLQLCQLSALQILDLSKNNLIGPIPHCIGNLTGMASKKNIAVNQPTRSVEWYEQEVRVFTKGRELEYTRNLKLVVTLDLSNNNLIGSIPEGITSLGALLSLNLSHNRLSGHIPKRIGDMKSLESLDLSHDQLSGAISESITSLTWLSHLNLSYNNLSGPIPIGTQLSTFDDSFIYGGNTFLCGPPLPNKCSDDNLQRDNDNEEKYQKEDKVEKLLFYFVIALGYFIGFWAVTGSLLLRRSWRLAYFQYIDESTRRIKVSLAIHLATFKERWTGIHEAE*

CDS Sequence:
>Vu_34108.1

ATGTTGGGGTTGCCTTTTACTATTGTTTTCCTCTTGACTGCAGCATTTGCGGTGTTATGTTCATGTGGCCATGCACCACTTGGTTGCAATGAAGAAGAAAGGCAAGCTCTTCTAAGGATCAAAGGAAGCTTCAAAGATCCTTCAAGCCTTTCATCTTGGGAAGGAACTAGTTGTTGCCAATGGAAAGGTGTAGGTTGCAATAATCTTACAGGCCATGTTGTCAAGCTAGATCTCAGAAATCCTTGTTATCCCTTACAAGGAGATTTTCAACCAAACTGTAAGTTTTACGATCATGTCCTTGAAGCTCAACATGTTCACCCTTCTATATTGCAGCTTAAATATCTAAGTTATTTAGATTTGAGTGGAAACAGATTTCACAATACTTCAATACCAGCGTTCATTCAAACGCTGCAGCATCTGCAATTCCTTTATCTCTCTGATAGTCATTTTAGTGGTAGGATCCCATACAATCTTGGGAATCTCACAAAATTGATCATTCTTGATTTGAGCTTCAATCCTCTTTTGTATGCGGATGACTTCTACTGGATTTCTCAACTCTCATCCCTCCAATACCTTTACATGAGTGATGTGAATCTTGATAAAGCACAAAATTTGTTGCAGTCACTCAACATGCTTCCTTCTTTATTAGAAATAGATTTGAGAAATTGTGGACTTGATAAATTGCACACCCATCAACATATTAGCACCACAAACCTTTCCAGACTGCAAGACCTCAATCTAGCAGAAAATGGACTTAAGACTTCGTTTCTGGATGCTTTTCAAAATATGACTTCCATTGCAGTCATTGACCTTTCTCACAACAACCTGAATTCCACTCCCTTCTGGTTGGAAACCTGTGCTAACCTCGACAGTCTATTTCTTGATAGTAATGCTCTTTATGGCTCACTTCCATCTGCTTTGCAGAATCTGACTTCCCTGGTTTATCTCGACCTTTCACAAAACAAGTTTGATTCTGTTCCCGGGTGGTTAGGTGAGTTAAAGGGTCTTCAATATCTCAGTCTTTCAGGTAATGATATAAATCATATTGAGGGATCTCTGGCATCTCTTCTGGGAAACTGTTGCCGTCTTCAACAATTAAATATGTCAAGAAACAAAATTCAAAGTGATGCACTTGGAAACCATATAGAGTTTGAATGCATTAGGCACCATTTAATACTTTTGGATTTAAGTCACAACGAATGTAATGGTCATTTGCCAGCATGGTTGGAACAGCTTGAAAATCTAAGATCGTTGATTATGACTGACAGTAATTTGGAGGGATCACTTCCTTGTGATATATTAACAAAACTTGTCAATCTGGAGAATTTGGTGCTTTCCAACAATAACTTCACCGGTTCTCTTCCTGACTGTATCGGGGAACTTGTCAGTTTAAAGATTTTAATTCTTTCTTCCAATCATTTTGATGGGATCATTCCAAGGAGTTTAGTGCAACTTGTAAGCCTAACAGATTTAGATCTTTCCCGAAACTCTTTAAATGGTACCATTCCTCACAATATTGGTCAACTTCAAAATTTGTCGACCCTCTATCTTTCTGAAAATAAGTTACATGGAAACATTCCTTTCAGTCTTAGTCAGCTTCTAAACCTTCACAACTTAGACATATCCCTAAATGATCTGGAGAATTTGGTGTCTGACATAAGATGGCCCAGGCAACTTGTCTACTTAAATCTCACCGATAATCGTATCAGCGGGTCACTTCCCCAAAATATTTCTGATAGTTTGCCCAATGTCGGTTACTTGCTTCTTGGAAACAACCTTATAAGTGGTCCCATTCCAAACTCATTGTGCAGAATAGGCTCCTTGTACAATCTTGACCTTTCAGGAAACATGTTAGTTGGTGAAATTCCTAATTGTTGGAATGTTACTCAAAGACTCGGTGTCATAAATTTGGCATCCAATAAATTATCAGGTGTCATTCCTAGCTCTCTGGGTAATCTACCCACGTTGGCATGGTTACATTTGAACAATAACAGCCTTCATGGGGGCTTTCCATCATCTTTGAGAAATTTAAATCAACTTTTAATTTTGGATGCTGGAGAGAACCATTTGTCTGGGATTATCCCTTCATGGATGGGGAATATCTTTTCCTCGATGCAGATTCTAAGGCTACGGCAAAACAGGTTGAATGGAACAATTCCTTTACAATTGTGCCAACTTTCTGCACTGCAAATTTTGGATCTTTCAAAAAACAACTTGATCGGTCCAATCCCTCATTGCATCGGAAATCTCACAGGTATGGCCTCAAAAAAGAATATTGCTGTAAATCAACCTACTAGATCGGTTGAATGGTATGAACAAGAAGTTAGAGTGTTCACGAAAGGAAGAGAACTTGAGTATACGAGAAATCTAAAACTCGTGGTCACATTGGACTTGTCAAATAACAATTTGATTGGATCTATTCCAGAAGGAATAACATCACTTGGTGCATTGCTTAGCCTAAATCTATCACACAATCGTTTGTCAGGACATATTCCAAAAAGGATAGGGGACATGAAATCCCTCGAATCTCTTGACCTCTCTCATGACCAACTTTCGGGTGCAATTTCAGAAAGCATAACTAGTTTAACTTGGTTAAGCCACTTAAATTTGTCCTACAACAACCTTTCAGGACCAATTCCCATAGGAACTCAATTATCAACCTTTGATGATTCTTTTATTTATGGTGGCAACACATTTCTGTGTGGACCTCCCCTGCCAAATAAGTGTTCTGATGATAATTTGCAACGTGACAATGACAATGAAGAAAAATATCAGAAAGAGGATAAAGTAGAGAAATTGTTGTTTTACTTTGTCATTGCACTTGGTTATTTTATTGGATTTTGGGCTGTGACTGGAAGCTTGTTGTTGCGGAGAAGTTGGAGGCTTGCTTACTTCCAATATATTGATGAGTCTACACGCAGGATAAAAGTTTCCTTGGCAATACATTTAGCAACTTTTAAGGAAAGATGGACAGGAATCCATGAGGCTGAGTGA

Promoter Sequence:
>Vu_34108::LG10:7741460-7743460(-)

CCTCACGCCGAGGTATATACATCTCGAGCGTGGGATTAGACATTTTTAATGGATGGTCCGATAGCGGGTGAAACATTTGTGGGGTTGAGTTAGGCTTAAAGTTCACTTCTAACAAAATTATTTATCATTTGATACATTTGAATTTAAATATTAATTTCAAAACATGGTTTAACAAAAAAGTTTTATGCTATTAAATTAAAAAAATTATATACATTTATTTTTTAAGTTTTAAAATAAAAAATATCAAAATTTAATACTATGAATTGCAATTTTTCATCTATAATTAAAGATGTGGATTTATAATGAGTCATGATAGCATCAAAGCCCATTACATTTAAGATATAAAACTACTGTGTGATGGAAATGTTTACTCAACCAATTAGGAATAATGAGTACAGAGGATCAAGTTTGGTAAATTTTAAAATATTACTTAACGACAAGAAATTGATAGATGTATCTCAAAAATGCATTACAGAAAGAAAACAAAGGCAATGGTTAACTTCAAAAAGCCGAAACACCCAAAATTATTTTCTAGCAAATTTCCAATATGCCCTAGAATATGGAAAAAGGCCTTCTTCTCTTATCTAATATTAAATCTAACAAACAGCATAGCTACTAAAAGTATGAACTTAACTCAAGGATTAGTCTAATTTATTTTTGAAAAATCTCATTTTAGATGAGTTTCTTAAGTGGAGGTTAAAAAAATTCCAACTCCCAAAACCTCCTCTTAAGTAATTTAGAGTCAGAATTTTATTAAATAATTTAACATGTTATAATTAAAAATAATTATTTTGCATATTTTTTAATGACATTTTCATTTTCTTATTTTTTATGATATGTTAAGTTTCTTTTGAAAAAAATAACCTTCATAATCATGCTAATAATATAATAATATATAATATCACATAATTTAATTATTTTAAATATTTCAAAAAAATACTTTTGACGTTTAAATTTTTAGTAATTATAAGAAAAAAATTAACTTTTAAGAATTCGCTTCAATACTAAAATAATTATTATTATTATAAAATATATATTACTTTGATTGAAATATTTATATATAATTTTTTGAAAAATTAAAAATACTTATATTTGTAACACATTGATAATTAATTATATTTTTTTTATATTCAAAATAAATATTCTTTTAAGAAAAGAAGATTCATGAATGCATTGGTTTTGCTCAATTTTTATATAGATACTTGACTCGTGTATATTTTTAATAAAATCTTTTTGATCTGTAATTTTTTCTAGCCCTATATAGATCAAAATTAAATCATATGATAAACCTACTCACATGTCTAATAACAACTACTCATGCTTCAAACTTTCAGTAATAAAATGAGAAAACGAATACAAACGTGACATATTTTAAAATCAACCTTTAAATTTTAATGTAATTTACCGTAGTTAAAATCCCTCTAACCCCTTTTATCACTAGATTCTGTAAATTACCAGCTCTACCCTTGTCAATCTCTCTTTTTGCCGTTATGTTTAACTGTTTTTAGAAAAGTTTTTGTAATTTTTAGAACATGAATTTTGGTTTTTTCTCATTCTTTCTCTCTCTCTCTCTCTTTTTAATAGATCATCGGCGTCTTAATTAGGTTAACGCATCACAATTTTACATTTATTTATTTGACACAGGATATAAAAATAAAATGATTATAAAAATATAAATTTTTATATATAAAAAAATAGGATAAAATAAACCTACAAAATTTAGATATATCAAATAATCATTCCTATGTGTAATATCCTCTACATGTACATATCATTATCTTCCGGTGCATAAGAATTATCTTAGACATTTAAATTTTATTAATAAAATTGCCTGCTTTGACCACAAAAACCAAACTTCCACACTTTTGCTTTGACCACTTTACTAGTGGTGCCGAGTCATCAATATTTCAGTTTCCTGCTTTCAGAGTTTTATTTGATATTGTCGACTTTGTTGCTCATCGACAACTCTGTTCTTTGTATTCTGACACTCTTCTGCAGAC

Gene Sequence:

>Vu_34108(-)