Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_34104	LG10	7590857	7593856	PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
T/G,*	7590878	synonymous_variant	p.Ile993Ile
C/G	7590883	missense_variant	p.Gly992Arg
T/A	7590884	synonymous_variant	p.Thr991Thr
T/C	7590893	synonymous_variant	p.Glu988Glu
C/A	7590895	stop_gained	p.Glu988*
C/T	7590896	synonymous_variant	p.Lys987Lys
A/G	7590911	synonymous_variant	p.His982His
T/A,G	7590927	missense_variant	p.Glu977Val
C/G	7590938	missense_variant	p.Gln973His
G/T	7590940	missense_variant	p.Gln973Lys
T/G,A	7590944	synonymous_variant	p.Ser971Ser
T/C	7590955	missense_variant	p.Ile968Val
T/A	7590966	missense_variant	p.Tyr964Phe
T/C	7590976	missense_variant	p.Arg961Gly
C/T	7590989	synonymous_variant	p.Leu956Leu
A/T	7590994	missense_variant	p.Leu955Met
C/A	7591004	synonymous_variant	p.Thr951Thr
G/A	7591005	missense_variant	p.Thr951Met
C/A	7591022	missense_variant	p.Met945Ile
A/G	7591027	missense_variant	p.Phe944Leu
G/A	7591031	synonymous_variant	p.Gly942Gly
T/C	7591042	missense_variant	p.Ile939Val
C/A	7591047	missense_variant	p.Cys937Phe
C/A	7591056	missense_variant	p.Trp934Leu
A/G	7591060	synonymous_variant	p.Leu933Leu
C/G	7591078	missense_variant	p.Glu927Gln
G/C	7591082	missense_variant	p.His925Gln
C/A	7591087	missense_variant	p.Asp924Tyr
A/T	7591118	missense_variant	p.Asp913Glu
G/C	7591126	missense_variant	p.His911Asp
A/C	7591142	synonymous_variant	p.Leu905Leu
A/T	7591162	missense_variant	p.Phe899Ile
C/T	7591163	synonymous_variant	p.Pro898Pro
T/G	7591169	synonymous_variant	p.Gly896Gly
C/T	7591174	missense_variant	p.Gly895Ser
C/A	7591190	missense_variant	p.Glu889Asp
G/A	7591210	missense_variant	p.Pro883Ser
G/A	7591220	synonymous_variant	p.Ile879Ile
T/G	7591224	missense_variant	p.Gln878Pro
G/A	7591250	synonymous_variant	p.Asn869Asn
A/G	7591258	missense_variant	p.Tyr867His
A/G	7591259	synonymous_variant	p.Ser866Ser
G/A	7591346	synonymous_variant	p.Asp837Asp
C/T	7591380	missense_variant	p.Arg826His
T/A	7591404	missense_variant	p.His818Leu
C/T	7591413	missense_variant	p.Arg815His
G/A	7591414	missense_variant	p.Arg815Cys
A/C	7591415	synonymous_variant	p.Leu814Leu
G/A	7591417	missense_variant	p.Leu814Phe
T/A	7591418	synonymous_variant	p.Ser813Ser
T/C	7591453	missense_variant	p.Asn802Asp
G/T	7591496	synonymous_variant	p.Thr787Thr
G/C	7591520	missense_variant	p.Ile779Met
G/C	7591535	missense_variant	p.Asp774Glu
T/C	7591541	synonymous_variant	p.Glu772Glu
T/G	7591568	missense_variant	p.Gln763His
C/A	7591581	missense_variant	p.Ser759Ile
C/G	7591615	missense_variant	p.Gly748Arg
G/A	7591626	missense_variant	p.Pro744Leu
A/G	7591634	synonymous_variant	p.Gly741Gly
C/G	7591635	missense_variant	p.Gly741Ala
C/G	7591637	missense_variant	p.Met740Ile
G/A	7591646	synonymous_variant	p.Asn737Asn
G/T	7591684	missense_variant	p.Gln725Lys
G/A	7591693	stop_gained	p.Gln722*
G/A	7591754	synonymous_variant	p.Ile701Ile
C/G	7591792	missense_variant	p.Asp689His
A/G	7591793	synonymous_variant	p.Asn688Asn
A/C	7591796	missense_variant	p.Asp687Glu
C/T	7591833	missense_variant	p.Arg675Lys
A/T	7591891	missense_variant	p.Leu656Met
T/A	7592098	missense_variant	p.Met587Leu
T/C	7592131	missense_variant	p.Asn576Asp
G/A	7592147	synonymous_variant	p.Ser570Ser
C/T	7592161	missense_variant	p.Asp566Asn
C/T	7592218	missense_variant	p.Glu547Lys
G/A	7592225	synonymous_variant	p.Asn544Asn
C/G	7592257	missense_variant	p.Val534Leu
A/G	7592264	synonymous_variant	p.Ser531Ser
C/T	7592283	missense_variant	p.Ser525Asn
T/C	7592428	missense_variant	p.Ile477Val
A/C	7592449	missense_variant	p.Ser470Ala
C/T	7592503	missense_variant	p.Gly452Ser
G/T	7592532	missense_variant	p.Thr442Asn
T/C	7592536	missense_variant	p.Lys441Glu
T/A	7592557	missense_variant	p.Ile434Leu
A/G	7592559	missense_variant	p.Ile433Thr
G/T	7592562	missense_variant	p.Ala432Asp
A/C	7592687	missense_variant	p.Asp390Glu
G/C	7592710	missense_variant	p.Gln383Glu
C/T	7592711	synonymous_variant	p.Thr382Thr
G/A	7592712	missense_variant	p.Thr382Met
T/C	7592747	synonymous_variant	p.Thr370Thr
G/C	7592748	missense_variant	p.Thr370Arg
C/A,T	7592758	missense_variant	p.Asp367Tyr
T/C	7592766	missense_variant	p.Gln364Arg
A/T	7592792	stop_gained	p.Tyr355*
T/G	7592793	missense_variant	p.Tyr355Ser
T/G	7592795	synonymous_variant	p.Ala354Ala
G/T	7592800	missense_variant	p.Leu353Met
G/T	7592819	synonymous_variant	p.Val346Val
G/A	7592825	synonymous_variant	p.Asn344Asn
T/C,A	7592830	missense_variant	p.Ser343Cys
A/G	7592837	synonymous_variant	p.Asn340Asn
T/C	7592838	missense_variant	p.Asn340Ser
G/C	7592840	synonymous_variant	p.Leu339Leu
G/A	7592843	synonymous_variant	p.Tyr338Tyr
T/A	7592898	missense_variant	p.Gln320Leu
T/C	7592926	missense_variant	p.Thr311Ala
A/G	7592964	missense_variant	p.Val298Ala
C/T	7592970	missense_variant	p.Ser296Asn
A/C	7592974	missense_variant	p.Tyr295Asp
A/C	7592978	missense_variant	p.Phe293Leu
A/G	7593054	missense_variant	p.Val268Ala
C/A	7593055	missense_variant	p.Val268Phe
G/A	7593093	missense_variant	p.Pro255Leu
A/G	7593101	synonymous_variant	p.Leu252Leu
C/T	7593105	missense_variant	p.Gly251Glu
T/C	7593116	synonymous_variant	p.Leu247Leu
A/G	7593182	synonymous_variant	p.Leu225Leu
T/C	7593207	missense_variant	p.Glu217Gly
G/C	7593230	synonymous_variant	p.Leu209Leu
A/G	7593245	synonymous_variant	p.Asn204Asn
T/A	7593251	synonymous_variant	p.Ala202Ala
A/T	7593264	missense_variant	p.Ile198Asn
T/A	7593281	synonymous_variant	p.Leu192Leu
A/G	7593293	synonymous_variant	p.Ser188Ser
A/G	7593314	synonymous_variant	p.Tyr181Tyr
T/C	7593328	missense_variant	p.Thr177Ala
G/T	7593390	missense_variant	p.Ser156Tyr
A/G	7593419	synonymous_variant	p.Ser146Ser
A/C,T	7593433	missense_variant	p.Ser142Ala
G/A	7593458	synonymous_variant	p.Phe133Phe
T/C	7593469	missense_variant	p.Ile130Val
C/A	7593505	missense_variant	p.Val118Leu
G/T	7593519	missense_variant	p.Thr113Lys
T/A	7593525	missense_variant	p.Gln111Leu
C/G	7593635	synonymous_variant	p.Val74Val
C/T	7593667	missense_variant	p.Val64Ile
G/A	7593668	synonymous_variant	p.Gly63Gly
C/G	7593710	missense_variant	p.Arg49Ser
A/T	7593716	synonymous_variant	p.Pro47Pro
A/T	7593746	synonymous_variant	p.Leu37Leu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_34104.1

MLGFPFGIVFLLTAAFAVLCSCGHAPLGCNEEERQALLRIKGSFKDPSRLSSWEGTSCCQWKGVGCNNVTGHVVKLDLRNPCYPLQGDFQPNCKFYDHVLEAQHVHPSILQLTYLTYVDLSGNKFLNSSIPAFIQKLQHLQSLYLSDSHFSGRIPSNLGNLTNLLVLDLSFNALLYTDDFYWISQLSSLQYLYMSDVILDKAQNLLQSLNMLPSLIEIDLRNCGLDKLHTHQHISTTNLSRLEYLNLAENGLQTPFLDAFQNMTSITVIDLSHNNLNSTPFWLETCANLDSLFLYSNVFYGSLPSALQNLTSLVSLDLSQNKFDSVPGWLGELKGLQYLNLSSNDVNHIEGSLAYLLGNCCHLQQLDMSTNKIQSDALGNHTQFECIRHDLMYLDLSHNECNGPLPAWLGQLENLSSLIMTDSNLVGSLPCAIITKLVNLKTLVLSNNNFTGSLPDCIGELVSLKILILSSNHFDGIIPRSLGKLVSLTDINLSRNSLNGSIPHNIGQLQNLSTLYFSENKLHGSIPFSLSQLVNLQNLDISLNHLENLVSDIRWPRQLVYLNLTDNRISGSLPQNISDSLPNVGYMLLGNNLISGPIPNSLCRIGSLYNLDLSGNMLIGEIPNCWSVTQKIGVINLASNRLSGVIPSSLGNLPTLAWLHLNNNSLHGGFPSSWRNLSQLLILNVGDNDLSGIIPSWMGNIFSSMQILRLRQNRLNGTIPLQLCQLSALQILDLSNNNLMGPIPHCIGNLTGMASKKNSSVNQSNRTVEWYEQDVRVVIKGRELEYTRNLKLVVNLDLSNNNLVGSIPEGITSLRALHGLNLSHNRLSGHIPKRIGDMKSLESLDLSHDQLSGAISESITSLTWLSYLNLSYNNLSGQIPQGPQLSTLEDPSIYGGNPFLCGPPLPNKCFHDDFQGGDEDEEKDHKEDKVEKLWFYCVIALGYFMGFWAVTGSLLLKRSWRLAYFQYIDESTQRINESLTIHLATFKERLTGIVNRGAE*

CDS Sequence:
>Vu_34104.1

ATGTTGGGGTTTCCTTTTGGTATTGTTTTCCTTTTGACTGCAGCATTTGCGGTGTTATGTTCATGTGGACATGCACCACTTGGTTGCAATGAAGAAGAAAGGCAAGCTCTTCTAAGGATCAAAGGAAGCTTCAAAGATCCTTCAAGGCTTTCATCTTGGGAAGGAACTAGTTGTTGCCAATGGAAAGGCGTAGGTTGCAATAATGTTACAGGCCATGTTGTGAAGCTAGATCTCAGAAATCCTTGTTATCCCTTACAAGGAGATTTTCAACCAAACTGTAAGTTTTACGATCATGTCCTCGAAGCTCAACATGTTCACCCTTCTATATTGCAGCTTACATATCTAACTTATGTAGATTTGAGTGGAAACAAATTTCTTAATAGTTCAATACCAGCGTTCATTCAAAAGCTGCAGCATCTGCAATCCCTTTATCTCTCTGATAGTCATTTTAGTGGTAGGATCCCGTCCAATCTTGGGAACCTCACAAATTTGCTCGTTCTTGATTTGAGCTTCAATGCTCTTTTGTATACGGATGACTTCTATTGGATTTCTCAACTTTCATCTCTCCAATACCTATACATGAGTGATGTGATTCTTGATAAAGCACAAAATTTGTTGCAGTCACTCAACATGCTTCCTTCTTTGATAGAAATAGATTTGAGAAATTGTGGACTTGATAAATTGCACACCCATCAACATATTAGCACCACAAACCTTTCCAGACTGGAATACCTCAATCTAGCAGAAAATGGACTTCAGACTCCGTTTTTGGATGCTTTTCAAAATATGACTTCCATTACAGTCATTGACCTTTCTCACAACAACCTGAATTCCACTCCCTTCTGGTTGGAAACCTGTGCTAACCTCGACAGTCTATTTCTTTATAGTAATGTTTTTTATGGCTCACTTCCATCTGCTTTGCAGAATCTGACTTCCCTGGTTTCTCTCGACCTTTCACAAAACAAGTTTGATTCTGTTCCGGGTTGGTTAGGTGAGTTAAAGGGTCTTCAATACCTCAATCTTTCAAGTAACGATGTCAATCATATTGAGGGATCTCTGGCATATCTTCTGGGAAACTGTTGCCATCTTCAACAATTAGATATGTCAACAAACAAAATTCAAAGTGATGCACTTGGAAACCATACGCAGTTTGAATGCATTAGGCACGATTTAATGTACTTGGATTTAAGTCACAACGAATGTAATGGTCCTTTGCCAGCATGGTTGGGACAGCTTGAAAATCTAAGTTCATTGATTATGACTGACAGTAACTTGGTGGGATCACTTCCTTGTGCTATAATAACAAAACTTGTCAATCTGAAGACTTTGGTGCTTTCCAACAATAACTTCACCGGTTCTCTTCCTGACTGTATCGGGGAACTTGTCAGTTTAAAGATTTTAATTCTTTCTTCCAATCATTTTGATGGGATCATTCCAAGGAGTTTAGGGAAACTTGTAAGCCTAACAGATATAAATCTTTCACGAAACTCTTTAAATGGTAGCATTCCTCACAATATTGGTCAGCTTCAAAATTTGTCCACCCTCTATTTTTCTGAAAACAAGTTACACGGAAGCATTCCTTTCAGTCTTAGTCAGCTTGTAAACCTTCAGAACTTAGACATATCCCTAAACCATTTGGAGAATTTGGTGTCTGACATAAGATGGCCCAGGCAACTTGTCTACTTAAATCTCACCGATAATCGTATCAGCGGGTCACTTCCCCAAAATATTTCTGATAGCTTGCCCAATGTCGGTTACATGCTTCTTGGAAACAACCTTATAAGTGGTCCCATTCCAAACTCATTGTGCAGAATAGGCTCCTTGTACAATCTTGACCTTTCAGGAAACATGTTAATTGGTGAAATTCCTAATTGTTGGAGTGTTACTCAAAAAATCGGTGTCATAAATTTGGCATCCAACAGATTATCCGGTGTCATTCCTAGCTCTCTTGGTAATCTACCCACGTTGGCATGGTTACATTTGAACAATAACAGCCTTCATGGGGGCTTTCCGTCATCTTGGAGAAATTTAAGTCAACTTTTAATTTTGAATGTTGGAGATAATGATTTGTCTGGGATTATCCCTTCATGGATGGGGAATATCTTTTCCTCGATGCAGATTCTAAGGCTACGGCAGAACAGGTTGAATGGAACAATTCCTTTACAACTATGCCAACTTTCTGCACTGCAAATTTTGGATCTTTCAAACAACAACTTGATGGGTCCAATCCCTCATTGCATAGGAAATCTCACAGGTATGGCCTCAAAAAAGAATAGTTCTGTAAATCAATCTAACAGAACTGTTGAATGGTATGAACAAGACGTTAGAGTGGTCATCAAAGGAAGAGAACTTGAGTATACCAGAAATCTAAAACTTGTGGTAAACTTGGACTTGTCAAATAACAATTTGGTTGGATCTATTCCAGAAGGAATAACATCACTTCGTGCATTGCATGGCCTAAATCTATCACACAATCGTTTGTCAGGACATATCCCCAAAAGAATTGGAGACATGAAATCACTAGAATCTCTTGACCTCTCTCATGACCAACTTTCTGGTGCAATTTCAGAAAGCATAACTAGTTTAACTTGGTTAAGTTACTTAAACTTGTCCTACAACAACCTTTCAGGACAAATCCCCCAAGGACCTCAATTATCAACCCTTGAGGATCCTTCTATTTATGGTGGAAACCCGTTTCTGTGTGGACCTCCACTTCCGAATAAGTGTTTTCATGATGATTTCCAAGGAGGTGATGAAGATGAAGAAAAAGATCACAAAGAGGATAAAGTAGAGAAATTGTGGTTTTACTGTGTCATTGCACTTGGCTATTTTATGGGATTTTGGGCTGTGACGGGAAGCTTGTTGTTGAAGAGAAGTTGGAGACTTGCTTACTTTCAATATATTGATGAGTCAACACAGAGGATAAATGAATCATTGACAATACATTTAGCAACTTTTAAGGAAAGATTGACAGGAATAGTGAATCGTGGTGCTGAGTGA

Promoter Sequence:
>Vu_34104::LG10:7593856-7595856(-)

GAAGAAAACAGAGAATAGAATAATCTGGAAGAAAACAGGACAGAGAAGGAGAAAATTCAGAAGAGACACGTAATAATTCTTTCTTATTCCCTGCATAACAGAAAGGTGCTTTATATAAGCACTACTCCTTACAGCTAATATTCCTTCACATGGTATAACGGTTTCCCCTAAAAGGGAGACACGTCACTCAGTAACAAAATCCCTAAGATAAATTGGCTGACGCACAACCCTCTTAGGTCGATCACTAGAAGCCTCTGGAGTATTGGTTGGGCCGTGTTCAGCTTCTGCAGTAGTACTTGGGCTACCCTCACCTTGTGCACAGTCAATAGGATTAGAGTACTGTAAGGGCCCAATGATTCTTTCATTTTCCTACCATGTTCCAATCACACCCAATTTATATTATCTTCACATATAAGACATGCACATTTTCCTTTAGTACTATTTCTAGATGAATTACCATACACTGGAAAATAATTAATTATGCCAAACAATATTGCCCTTAGAAGAAAACTTCATCATTCCACATATCCTTCAAGTCTTCAATAAAAAGTGTCAAGTATATGTTTATGTCATTCCTTGGTTGTTTTGGACTTGGAATTAACATGAACAACATCATGAATTTCCTTTTCATGCATAATCATGGAAGTAGGTTATATATAATCATAATCATGGGTCACGTGCTATGCGAGCTGTTTTTCATACCATATAGATTTATTCCATTATTAGATAAAACAAGACATAGGTTTTGTAGTTCTTTCCCAAACTTAGGATAATCATGATCAACTTTTTCCCATTGAGAAGAATTTGTAGGGTGTCAAGCTTTCCATCACATATCCTTTCCTTCACATATGTTTACATCATTTGACATGTTTAAATTCAAATGTCAATATTGAAACGTCATTTAATACGTAAAAAGAATTTAACGTCATTGAATTAAAAAGATTATATACATTTATTTTTTAAGTGTTAAAGACTAAAATATATCAAAAAATTAAACACTAACAAATTTCAATTTTAACGTAAATAAAGATTCACGAAAGCATCAAAGCCCATAATATGTCTACATTTAAGAAATAAAACAGTTGTGTGATGAAAATGTTTACTCGGTCAATTAGGATTAATGAGTACAGAGAATCAAGTTTGACAAAATTTAAAATATTACTTAACGACAAGAAATTGATAGATGTATCTCAAAAATGCAGTACAGAAAGAAAACAAAGGCAATGGTTAGCTTCAAAAAGCCGAAACAACCAAAATTATTTTCTAGCAAATTTCCAGTATGCACTAGAAAACTGGAAAAGGCCTTTCTCTCTTATCTAATATTAAATCTAACAAACAGCATAGCTACAACCCATGCTTCGAACTTTCAGTAATAAACTGCGAAAACGAATACAAACGTGATATATTTTAAAATTAACCTTTCAATTTTATGTAATTTATCCTAGTTAAAATCCCTCTAACCCCTTCTATCACTAGATTCTATACATTACCAGCTCTACCCTTGTCAATCTCTCTTTTTGCCGTCATGTTTAACTGTTTTTTAAAAAGGTTTTTGTAATTTTTAGAACATGAATTTTGGTTTTTTCTCATTTTTTCTCTCTCTTTTTAACAGATTATTGCAAATGTTGCAAATGATTATCGAAGTACGGCATCTTAATTAGGTTGACGCATATTCATAAAGTCTACATATAAAACCTGTAAAATTACATGTAATATCCTTTATATATACATATCAGTATCTTCCGGTGCATAAGAATTATCTTAGACATTTAAATTTTATTAATAAAATTGCCGGCTTTGACCACAAAAGTCTAATAACCACAAAAATCAAACTTCAACACTTTGGCTTTGACCGCTTTACTAGTGGTGCCGAGTCATCAATATTTCAGTTTCCTGTTTTCGGAGTTTTATATGATAAACTAAGTGACGCCTATATATTGTCTACTTCGTTGATCCTCGCCAACTCTGTTCTTTGTTTTCTGACACTCTTCTCTGCAGAC

Gene Sequence:

>Vu_34104(-)