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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34009 LG10 4628103 4633606 PREDICTED: serine/threonine-protein kinase MHK isoform X1
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Annotations  
category   relationship type   keyword
Biological Process   involved in   protein phosphorylation, protein phosphorylation, protein phosphorylation, intracellular signal transduction
Cellular Component   is active in   nucleus, cytoplasm
Cellular Component   located in   nucleus, nucleus, nucleus, cytoplasm, nucleus, cytoplasm, nucleus
Molecular Function   enables   protein kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, ATP binding, protein kinase activity, protein serine/threonine kinase activity, cyclin-dependent protein serine/threonine kinase activity, cyclin-dependent protein serine/threonine kinase activity, protein kinase activity, ATP binding, cyclin-dependent protein serine/threonine kinase activity
Pathway   B 09181 Protein families: metabolism   C 01001 Protein kinases [BR:ko01001]
SNP Position Effect Amino acid change
G/A 4628119 missense_variant p.Thr382Ile
T/C 4628131 missense_variant p.Asn378Ser
T/A 4628170 missense_variant p.Asp365Val
A/G 4628193 intron_variant
A/T 4628197 intron_variant
A/T 4628200 intron_variant
T/G 4628266 intron_variant
T/A 4628280 intron_variant
A/G 4628292 intron_variant
G/T 4628367 intron_variant
C/A 4628421 intron_variant
T/C 4628486 intron_variant
G/T 4628490 intron_variant
A/T 4628513 intron_variant
G/T 4628573 intron_variant
C/A 4628580 intron_variant
C/G 4628586 intron_variant
T/G 4628616 intron_variant
G/A 4628636 intron_variant
T/G 4628645 intron_variant
A/C 4628673 intron_variant
C/T 4628894 synonymous_variant p.Lys346Lys
C/A 4628905 missense_variant p.Ala343Ser
T/C 4628908 missense_variant p.Ile342Val
T/A 4628943 intron_variant
C/T 4628967 intron_variant
A/C 4629040 intron_variant
A/C 4629097 intron_variant
C/G 4629196 intron_variant
G/A 4629224 intron_variant
A/T 4629243 intron_variant
C/A 4629295 intron_variant
T/C 4629302 intron_variant
G/T 4629307 intron_variant
T/C 4629321 intron_variant
T/C 4629372 intron_variant
C/T 4629439 intron_variant
C/T 4629544 intron_variant
A/T 4629867 intron_variant
C/A 4629887 intron_variant
A/G 4629895 intron_variant
G/T 4629941 intron_variant
A/G 4629967 intron_variant
C/A 4630179 splice_region_variant&intron_variant
C/G 4630245 intron_variant
G/A 4630249 intron_variant
G/T 4630406 intron_variant
C/A 4630429 intron_variant
C/A 4630705 intron_variant
G/T 4630754 intron_variant
A/T 4630824 intron_variant
G/A 4631071 intron_variant
A/G 4631215 intron_variant
T/C 4631232 intron_variant
T/C 4631439 intron_variant
G/C 4631455 intron_variant
T/C 4631463 intron_variant
T/C 4631472 intron_variant
A/G 4631475 intron_variant
T/A 4631482 intron_variant
T/G 4631579 intron_variant
G/C 4631656 intron_variant
T/C 4631738 intron_variant
A/C 4631747 intron_variant
A/G 4631763 intron_variant
T/C 4631772 intron_variant
T/A 4631779 intron_variant
T/C 4631788 intron_variant
G/A 4631792 intron_variant
C/G 4631829 intron_variant
G/A 4631844 intron_variant
T/C 4631874 intron_variant
A/T 4631948 intron_variant
T/C 4632037 intron_variant
C/A 4632048 intron_variant
T/A 4632086 intron_variant
G/C 4632121 stop_gained p.Ser155*
C/G 4632194 missense_variant p.Gly131Arg
G/A 4632207 splice_region_variant&intron_variant
C/A 4632213 intron_variant
T/C 4632244 intron_variant
T/G 4632251 intron_variant
T/C 4632267 intron_variant
A/C 4632325 splice_region_variant&intron_variant
A/G 4632370 synonymous_variant p.His114His
T/A 4632415 missense_variant p.Glu99Asp
T/C 4632488 intron_variant
G/A 4632536 intron_variant
C/A,* 4632596 intron_variant
C/G 4632724 intron_variant
A/T 4632878 missense_variant p.Val31Asp
A/T 4632895 intron_variant
A/T 4633004 intron_variant
A/C 4633048 intron_variant
T/C 4633109 intron_variant
G/T 4633169 intron_variant
A/T 4633185 intron_variant
G/A,T 4633197 intron_variant
A/T 4633202 intron_variant
A/C 4633211 intron_variant
A/G 4633247 intron_variant
C/G 4633289 intron_variant
A/C 4633309 intron_variant
T/C 4633362 intron_variant
G/T 4633391 intron_variant
C/A 4633475 missense_variant p.Gly11Val
G/A 4633517 intron_variant
A/T 4633531 intron_variant
T/C 4633539 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34009.1
MERYKILRELGDGSCGHVYKARDMRTYEIVAVKKLKRKFCFWEEYTNLREVKALRKMNHPNIIKLKEVVRENNELFFIFEYMDCNLYQLIKEREKPFSEEEIRCFVRQMLEGLSHMHKKGFFHRDLKPENLLVTNDVLKIADFGLAREVSSMPPYTQYVSTRWYRAPEVLMRAPSYTPAVDMWAVGAILAELFTLTPLFPGESEIDQLYKIYGILGMPDSSAFTIRENNSQLLDLVSHEIVPPVKLSNIIPNASSEAIDLMTQLLHWDPSRRPDADQSLQHPFFHVNAWVPYPLSDPLELKLSSKRAKPNLELKLQDFGPDPDDCFLGLTLAVKPSVSNIDVVQNVSQGVRENMLFCSDFNDHSDQSVFWTLLSPDRNGVANSTETSLSLSF


CDS Sequence:
>Vu_34009.1
ATGGAAAGATATAAAATTTTGAGAGAGCTCGGGGATGGTTCTTGCGGTCATGTATATAAAGCCCGTGATATGCGAACATATGAGATTGTTGCTGTCAAAAAGTTGAAAAGAAAGTTTTGTTTCTGGGAAGAATACACAAATTTAAGAGAAGTTAAGGCCCTCCGTAAAATGAATCACCCAAATATCATAAAGTTGAAAGAGGTTGTTAGAGAAAATAATGAACTATTTTTCATTTTTGAATACATGGATTGTAATCTTTATCAATTAATAAAGGAGAGAGAAAAACCCTTTTCAGAGGAAGAGATACGGTGCTTTGTGAGGCAAATGCTGGAAGGACTTAGTCATATGCACAAGAAAGGATTCTTTCATCGGGATTTAAAACCTGAGAATTTGCTGGTAACAAATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCAATGCCTCCATATACTCAATATGTTTCCACACGGTGGTATCGAGCTCCAGAAGTTTTGATGCGAGCCCCTTCTTATACTCCTGCTGTTGACATGTGGGCAGTTGGTGCTATATTAGCTGAGCTTTTTACTTTGACCCCTTTATTTCCTGGTGAAAGTGAAATAGATCAACTGTACAAAATATATGGCATTCTTGGGATGCCAGATTCCTCTGCTTTCACCATCAGGGAAAACAACTCTCAATTATTGGATTTGGTTTCTCATGAAATTGTTCCACCTGTGAAACTTTCTAACATCATTCCAAATGCTAGTTCGGAAGCTATAGACTTGATGACACAACTGCTACATTGGGACCCATCAAGAAGGCCAGATGCTGATCAGTCATTACAACATCCATTTTTCCATGTGAATGCATGGGTTCCTTATCCACTCAGTGATCCACTTGAGCTGAAGCTGAGTAGCAAGAGGGCAAAGCCAAATCTCGAGCTGAAACTGCAGGATTTTGGCCCCGATCCCGATGATTGTTTTCTTGGCTTGACCTTAGCTGTAAAGCCCAGTGTTTCAAACATAGATGTGGTCCAAAATGTATCGCAGGGTGTAAGAGAGAACATGCTATTTTGCTCAGATTTTAATGATCATTCGGACCAGTCAGTATTCTGGACCTTATTATCTCCTGATCGAAATGGTGTTGCTAACTCAACAGAGACTTCACTGTCACTGTCATTCAG


Promoter Sequence:
>Vu_34009::LG10:4633606-4635606(-)
ATATTTGAGTATGTAAAAAGTAAAATAAATAGGTGGTTTGAAAAGTTTCATTGTATTATTCTATTATTAAATTTAATTTAAAAAATAAATTTGCATTAACATACCATTTGTAGGATTAATTCGATATTAAATTATAAAATGTGTGGACCAAGTCCGATTACTTTATATCTATTTATTTTGGGAGACTAAATCAAATTATATTTCAAAAAACTTAAATTAGTTCTTTTATTTTTCAAACACTTTCGCGACCTACTTTACATTTATGTCCAATATTTTACAAATGTTATTTGTCAACTTACAATTAAATTTATATTTTTAAATTTTAACAAAAGTAAAAAATATTATATTTATTTATTTCTTTGGTTTCTTCTCCTTCCTTTTTCATCTATGGAATCCTTCCCCTCTCTCTCATATGGCTTCTTCTCAAATCCGATTTTTCTCTCTCTAAAACTTTTCTCTCTCCTCTTCTCTCTCTTTCTCCCTACGAATTCATATTTCTCGTTTCTTTTCCGAGAAAGTTCATTCGCATTGCCGATCTCTGCTTGCGTATCTCTTGATTCCACACTTATTCTTTCGAATTCTCACAAGCGGTGAGTTCTTCGTCTTTTCATTTTTTTTTCAAAATTTTCTTCGTGCGTTACGTCAATTTTTGATTCTTTGTGTTGCTTTCGTTTCCTCTGGTTTGTAGCTGCCACGTAAACTCAAATGCAGCTTGAATTGTAGTCTCTTTTTCCTTTGCGATCGGTTTATTTCATAAGAGAATGAGGAATGAAAAAGAAAGCCGAGTTCTTTTTCACTTGCTCTGAGTTCAAACAATACTTTATGGATTCATCACAATGGAAAATACCCGAAATTGTGTTTTCTGAATTGTTTCGGACCAGGTTGTATAGAGCGCGCGTATTCTTTGTGCAAAACTGTTATAATTTTGAGAGAAATACTTTTTATGGTTAGATTGTGAAGAAAACTTCTTCTTCGTCTTTTTTACATATGCATACATATCTTGTGTTTATGTTTATAGCCCTTGTTTGGATTCGCTTATTTGGGGTACATAAATATATATGTATTTTTTTCTTTGGCTTCTTTATATAACTTTTCAAAAAAAATCGTTTTCCATACTTTAAGCTAAACAAAGCACGTTAAATTTACATTTTCTTTCTTTCTTTTTTTGTTTAATTTCTTTGTTGTCTGATATGGATTCTTTGGTCTGATTTACTTGCTGATTGTGGCTCTGGATTGTCGACCAATAGATTTTGGTTTTTGTGCGTTGATTAAAGAGAGTGATATGAGTTGAATTGTTGGTTATAATATTGTACCGACGTAGAGGGTAGGCATGCGTTAGAATTCTTATACAACAAGGCATGGTTGCTGTTGTGTTGCTAGGATCCGACTGTTCGTGGGAAGCTTTGTTTTCTGATCAATGTTATATTTTATTGCTGGGTAGATTAGTGGAGTAAATTCCACGAATTCTTTGGGCTCAGGCCCCCCCTCCCCCCTTCAGAGGATTGAAAGACAAACCTGTCACTTGTCTGACTATTGAGCGATATTATCACTGTTGAGTTTGCACAGTGAAATAATATAATACTGCATTTTCCTATTAATTCACTATTTAAGTGCACATATTGTTCGGTAATTTGTGTAGTTTTCAAACCACTGACATTTATATTTTGTACTGCAGGTTATCACTTGTTCTCCAATGTATGGGATCAGTTTGAAGTCGCTTTAGTCAAACTGAACATGGATATTCATCTAAAATGATAAAGACATCACCCGAACACTGGGTTTTCTGAAGGTTGCAACATGTTGATGGACCTCTCCGTTTTTGTAGATAACTTCTACAATGAAAAGTGGATTGTTGATGATACTAAATGCTTCATGCTATATTTTAACTCTAACCCATGTCTGCAAACTAAGTGCCGACACTGTGTTGACAGTTAGCCATCTCTTCATGGAATCTGTTCCAGTCTCTCTGAAGTTTTATTTATAGTGTTGTAATTCTAACA


Gene Sequence:
>Vu_34009(-)
ATGGAAAGGTTAGTTTCTTCTTATCCATTGACTTGTGCATTGTTTCTGGTCCTTCAATTTCCTCATTAAATTAAATTTTTTCTTGTCTGCTATTTTCTTCCTTTCAGATATAAAATTTTGAGAGAGCTCGGGGATGGTTCTTGCGGTCATGTATATAAAGCCCGTGATATGCGAACATATGAGATTGTAAGAAAATCTTGCTAGCTAGAACAATTCTTTTCAACTTCAGCGTATTTATCTACTCATATTCTTTTAATATTCTTGTGCAGTTATCCTTTATTGTTGTTAGATTCGTCCTATATAGTAAACGGCCTTTTGAAGTTCCTTGTCCATTTAATATTCTTTTCGAGTATTAACTTTGTTGTGGATGTTTTTCCCTCCAAGCTTTCATGTTTTTATCTCTTTGATTCTCTGATAAAATTAAAAAAAAAGGTGATCTACAATTTCTATTTTTTGTAAGACATTCTTTTAAGGATAAAAACTTTTTCTGTAAGACTAATGTGATAACAATGTTAACATTCATCATGTTTACATTGTATATTGAAATGGATACACTTCTTTTTTGCTTTAATTATAAACGTTCCTTTTGTTTTCTGGGATGCTCCTTTGAGAGGTACACTTACCGCACTGATTTATGCAGTGGCTTCTTTCATTGTTGTTTAAACTGCACTTTCTACTTTTTAGTATCTTCTGATGTTATGCTCGTGATTTTGTCTATCAGGTTGCTGTCAAAAAGTTGAAAAGAAAGTTTTGTTTCTGGGAAGAATACACAAATTTAAGAGAAGTTAAGGTATATTCTACAGTACTTATTTCTTTATGGAGTTATAGATGGTTTTGCCCCTGCTTGAACTGTAATAAGATTTTGTTTAAATAATGTGTATTGTGCTCCTTCTGCAGGCCCTCCGTAAAATGAATCACCCAAATATCATAAAGTTGAAAGAGGTTGTTAGAGAAAATAATGAACTATTTTTCATTTTTGAATACATGGTAAAGAAACTCATCGTCTTATTGTTTTATTGGTCAGTTATGTTTTATCACTACCATGCAGTTTATCCAAAACTCTTTAATCTCTATAATTAAGGTTGAATGTTCTGTGTTGACACTTGCTTGACAGTGACACTAGATTTCATCTGTTCAGGATTGTAATCTTTATCAATTAATAAAGGAGAGAGAAAAACCCTTTTCAGAGGAAGAGATACGGTGCTTTGTGAGGCAAATGCTGGAAGGACTTAGTCATATGCACAAGAAAGGATTCTTTCATCGGGATTTAAAACCTGGTAATGCATATGATTTCGTTTAACAAATTTTGGACAGCATAATTTTTTGTTTTAACTTTTCAATTCAATCTTTCTAAAAGGTGATATGGCTCTTTATCTAATGAAAAATGATTTCTGCTATGCAGAGAATTTGCTGGTAACAAATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCAATGCCTCCATATACTCAATATGTTTCCACACGGTGGTAAGTCGTATTCTTATGTGGCAGATTTATAATGTCAGTATACATTTTTCAATGTACAATTTCAAATGTCACCTCAAAACTGTCTGTGTACATTTTATCTCGAGGTTTCTTTTTATTCTCATCATCATTATTAAATTTATTCTATTTTTATCTTTGTAATTAAGGTATCGAGCTCCAGAAGTTTTGATGCGAGCCCCTTCTTATACTCCTGCTGTTGGTAGGCATAAATCTCCTTTTAACTTCAATATTTCTGTTTGCATTTGTTATATAGTGGGCTGGTGCTTGTTTTTGGGAACTATGATGGAATGGCTTTAGAGGAAACATTTTAGATTTGTAGTTTCTTCTGCCTCAATCTGTTTTTCCATGGGATCTCCCAAAAGCAAATCCAGACATTTAACCTTGTTCCCTTTATTTTACTGTTTATTGAAGTTTAAGCTAATGCTCACTAGACATTTATTCCTTCAGTTAAATTGATTTGTGGTGTCTCATGGGGGTAGGGAGACAATTCTAGTTGGGGATTAGATATTGTAGGATTACCATTCTCTTTTGTTTAGTCTTGTCTGAATTTATCCTCCGAACATACTGATAAACATATATTTGCATCAATACTGATTTAACAAGGAACTTCAACAATAAAAATTAATGACAAAGGGATTTTACATAAATGTGAACATTCTCTGTGGCCAAACTTGTTTACCATTATTTATTCTGTAACTCTAAGATGATGATATGCTTGCTTTCTTAAATTATTTGCAGACATGTGGGCAGTTGGTGCTATATTAGCTGAGCTTTTTACTTTGACCCCTTTATTTCCTGGTGAAAGGTATATTTTATCCTGTATTTTATGCTTTTGGTCTTTAATTGTAAAAATACTAATAATTGTCTTTTGTTAGTTATACATTTAGCTTTCATCCGTTGAATGTATTTTTTTGAGCCCTTTGTGCATTTACTGACCAATTTTCCATCAACAAAATGTCAATTTGCTATGCTCTCTGCATTTGCATGTGGATGGCATTAAAAAATTTTGCTACCAAAGGTAAAACCTGAGATATTATAATAAAGGGCAGTCATGTTCAAAGGAAATTGAAAGAAACCACTAGATCAAGATGCATTGGCATGTTTTCACTTTCTGTAATTTGAAACATTTTGTCGGTTCATAATGATGAAATGTTTAATGATTTTGATTTCAATGACTAATATACTTGTGGAACAGATTGTTTTTAAGGCTTCATTATACATATCTAAGTTTTGAAGTCATATTTGAAATGTACAAAAAATTTATTCTATGGATCAAGGCATTTGTGTACTGATGTTTTTTTTTCATATGAAATAATTTTTTTTTGTTTGCTAAAAGCAAAATGTTTATACCTCTCTTAAATACACTTCATTTTGGTGTGTTTGATATTTTCCTTTTTCTTTACATATCACACATGTATAAAACTTTTGTCCAATGTAAATTGTATTTGGTATTGATTCAGATGGTATATGTATATTCATAAGATTGGATTATTGTGCTTTTCATTGCATCTTATAAAATTACTTTGACAGTGAAATAGATCAACTGTACAAAATATATGGCATTCTTGGGATGCCAGATTCCTCTGCTTTCACCATCAGGGAAAACAACTCTCAATTATTGGATTTGGTTTCTCATGAAATTGTAAGTGTTCATGTAGCTGGAGTTCAGTCATGTACCAGTCGTTTTGTTGTCCTTTTTTTTCTTTATTCTATTTAATCCCTGATTCTTTTGCAGGTTCCACCTGTGAAACTTTCTAACATCATTCCAAATGCTAGTTCGGAAGCTATAGACTTGATGACAGTATGTTTTAGTTAATTGAATCTCTTTTTTTCTCTGTGCATGCATGCACACACTGACCTTGTAAATACTTCAATCCTCTAATATTCACTGCATTATAAAATCCGTAGCAACTGCTACATTGGGACCCATCAAGAAGGCCAGATGCTGATCAGTCATTACAACATCCATTTTTCCATGTAAGTTTCTCATGAAGCTTATTCTTCTTCACTTAATTTCTTCAACTTACTAATATATTCTATATAGGTGAATGCATGGGTTCCTTATCCACTCAGTGATCCACTTGAGCTGAAGCTGAGTAGCAAGAGTAGGGAATTTTATCTTTTATTTGTGTTTTTTATCCTCGTATTATACTTACACATTTCATTTTGTCTCATCTTAAAATGCTAATTGCATTGGGATAGGTATTTGACTCTATTGTTTATTGTTTTCTTCTTTCACTACTTACAGGGGCAAAGCCAAATCTCGAGCTGAAACTGCAGGATTTTGGCCCCGATCCCGATGATTGTTTTCTTGGCTTGACCTTAGCTGTAAAGCCCAGTGTTTCAAACATAGGTAAATACAACCTTAACTAATTATTTAACCATAGTAAAAGTAACATTGAATAAAGGCTGATAAGGAGGAAAAAGAGAATAAAGACTTTGAATTATATGATATTGTCTACATTGATCTGTTTTTCTTTTTGAAAGTCATTGATGTGATGCAAAGGTATTAAATAGCAAACGAAATACTGTAATATAAGTATGGACCTATTTCCAATGTATCATTTATTATAATCTAAATTATTATGGGATATAATAATGTCTGCTAAACATTGTATACTGGATAAAATTAAAAAAGGGTAATGCTTCCTTACAAAGATGTTTAATAGTGTATGATGAGAAAATAGTGGTCATCAGTAATTTGAATGTTTATTTATGCAAATATATGTTAGATTGTTTATTTATCCAAATGTATCTCCGTTAAAGCTGTCATATGCGGCAATATTCAGTAGTAAAGTAGTTGTTACTTTGATTGTTTGAATTGATATGGCCCTAATTTCTTTTTTTTTTCGGGAGTTTCGAAATTCACATGTTTTGTATTCTCTCCGGAGAAAATATTCTGATTTCCTGGAAACCCTTGGCCTGCATCTGTTGTCAGTTACAATTTGATGAAAATGGTTTTCAATTTGATATGTTGAGTAAGTTTTTTTTCCTGAATGATGTTGGTAGTTCTTTGAGTTGTTTAAACCTTTACAGTTATTATTTTTCACTTAGTAATTGTGCAACCCTTTGGCCTTTTACATTTTAAAACTTTTTTTATTTTCCTTGTTTTATTAGTAATGCCCTTTGCTGACCATTTAATTTTTCTTTTTGCTGCAGATGTGGTCCAAAATGTATCGCAGGGTGTAAGAGAGGTTGGTGTATGGTGCTGTTAATCCTTTAGCTTGTTATATTTAATGTTTTGTAATCATAATACAACCGTTGTTTACCTCTATTTTGACTTAATCGACCATATGAACATGCAGAACATGCTATTTTGCTCAGATTTTAATGATCATTCGGACCAGTCAGGTGATAATTAGTTTCTTACCTTCTAGTTGCATTATAATCTTTACTAAGTTTTTGTTTTTTTTTACAAAGAAGATAATTAAAAAGGTTATATTCAGGCCTGATTTATTTTTTGGGAAATATTCATTCTACTTTCTCTGCTTTGTTTGGTGAAAGAATAATCTTCTAGTATAAAGAAGAAATCATTCTATTTTCACAAGCAAGTTTACATGGGGATGAGAATAACTCCTAACCATGCTTTGGTTCACTAATGAGAACTCAAACTTGTAGGATTTATGATGGGAAAACAAAGCGTAGGTGTGTAACATAAAGATGATACATTTAAACAATTGAAACCTCTTATTTGAAAATAGAAAAGAAAAGGACTGCATGACCATATATATTTGAACACCGTTCACAGAATCTTTGGCGAGGACCAAATTAACTGATCATCATTATGACGCTTAAGTAAGACAATCCGATGCCACATATGAAATGGTTTATTAATCTTTTGATGACATGAGTTTCTTGTTTAAAACTCGACGATGTTGACGAGTTATATTTATTTGGTGATATAGTATTCTGGACCTTATTATCTCCTGATCGAAATGGTGTTGCTAACTCAACAGAGACTTCACTGTCACTGTCATTCAG

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This project is funded by the Department of Biotechnology
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Government of India

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