Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_33943	LG10	3221785	3224415	PREDICTED: probable receptor-like protein kinase At4g39110	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/T	3223135	missense_variant	p.Asp427Glu
A/T	3223158	missense_variant	p.Leu420Met
T/A	3223182	stop_gained	p.Lys412*
C/A	3223221	missense_variant	p.Ala399Ser
G/A	3223306	synonymous_variant	p.Thr370Thr
G/A	3223322	missense_variant	p.Thr365Met
C/T	3223374	missense_variant	p.Val348Met
G/A	3223393	synonymous_variant	p.Leu341Leu
T/C	3223570	synonymous_variant	p.Gln282Gln
C/A	3223585	synonymous_variant	p.Val277Val
A/G	3223594	synonymous_variant	p.Ala274Ala
T/C	3223638	missense_variant	p.Ser260Gly
A/G	3223642	synonymous_variant	p.Asp258Asp
A/G	3223645	synonymous_variant	p.Pro257Pro
G/A	3223772	missense_variant	p.Thr215Ile
T/A	3223773	missense_variant	p.Thr215Ser
G/A	3223825	synonymous_variant	p.Ile197Ile
G/A	3223840	synonymous_variant	p.Asn192Asn
C/T	3224000	missense_variant	p.Ser139Asn
A/T	3224071	synonymous_variant	p.Ala115Ala
C/A	3224090	missense_variant	p.Arg109Met
C/A	3224098	missense_variant	p.Lys106Asn
T/A	3224099	missense_variant	p.Lys106Met
G/T	3224108	missense_variant	p.Pro103His
A/T	3224116	missense_variant	p.Phe100Leu
T/G	3224129	missense_variant	p.Glu96Ala
T/C	3224188	synonymous_variant	p.Lys76Lys
C/T	3224290	synonymous_variant	p.Ser42Ser

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_33943.1

MGKIEKTIMAFIQPFLSPFSSSSLMATLLVLITLLFSFSSPSLALSPSEIFQPKDNFLIDCGADSVSTLPDGRHFKTDPQATSFLKANDEYKVNAEDANFSSPIYKSARIFIQEAIYSFHLVQPGFHWVRLHFYPVKNSVFDLQKATFSVYTDTYVLLHSFNVNNTDKPILKEYLINATEPQFSISFIPLKNSAAFINAIEVVSAPDELIFDTATSLFPVEEFSGITSYGLQPVFRVNNGGPLITSSNDTLGRTWDPDESFLTNKNLAKSVSVATNVVKFPQHNPAISSLTAPQTVYASATEMADAGVNQPNFNVSWKFDVDTSFSYLVRLHFCDIVSKGLNQLYFNVYVNGKMAISNFDLSATTGALSTPYYKDIVVNATLMTEGLSIQVGPTSGGSASANALVNGIEVMKMSNTVNSLDGEFGVDGRSVSGSSRGTVAAVGFAMMFGAFVGLGAMVIKWHKRPQDWQKRNSFSSWLLPLHAGDTSFMSSKNSMGKSNFFSSSMGLGRYFSFAELQEATKNFDSKNIIGVGGFGNVYLGVIDEGTQVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSLIGYCDENDEMILVYEYMPNGHFRDHLYGKNMPPLSWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKTTNILLDENLTAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPQLPREQVNLADWAMQWKRKGLLDKIIDPQLIGSINPESMKKFAEAAEKCLADHGVDRPSMGDVLWNLEYALQLQEAFTQGKPEEAPTSPLPQAPATPTDDTPTQPPAPAAPAAPAAAVPRAEVNNATPEVHSIDDHSGTAMFAQFNNLNGR*

CDS Sequence:
>Vu_33943.1

ATGGGGAAGATAGAAAAAACAATAATGGCTTTCATACAACCTTTTCTATCACCCTTCAGCTCATCATCTCTGATGGCTACCCTCCTGGTCCTCATCACCCTTCTCTTTTCCTTTTCCTCTCCTTCGTTGGCCTTGTCTCCCTCAGAAATCTTCCAACCAAAAGACAATTTCTTGATCGATTGTGGAGCAGACAGTGTTTCCACCCTCCCTGATGGACGACATTTCAAAACAGACCCTCAAGCTACTTCTTTCTTGAAAGCCAATGATGAGTACAAAGTCAATGCAGAAGATGCAAATTTTTCTTCACCTATATACAAGAGTGCAAGGATCTTCATCCAGGAAGCTATATACTCCTTCCATTTGGTCCAGCCAGGTTTTCACTGGGTTCGCCTTCATTTCTACCCCGTCAAGAACAGTGTCTTTGATCTCCAGAAGGCCACTTTCTCTGTCTACACCGATACCTACGTGCTTCTCCACAGTTTCAATGTCAACAACACTGACAAGCCAATCCTCAAGGAGTACCTCATCAATGCAACTGAGCCTCAGTTCTCCATTTCCTTCATCCCCTTGAAGAACTCAGCCGCATTCATCAATGCCATTGAGGTTGTTTCCGCTCCTGATGAACTTATCTTCGACACCGCCACCAGCCTTTTCCCTGTTGAGGAGTTCTCCGGCATCACATCCTATGGCTTGCAGCCTGTTTTCAGGGTCAACAATGGAGGGCCTCTCATCACCTCATCGAATGATACCCTTGGGAGGACTTGGGATCCTGATGAGAGTTTCCTCACAAACAAGAACTTGGCCAAGAGTGTCTCGGTGGCTACCAATGTGGTTAAATTCCCCCAACACAATCCTGCAATCTCCTCTCTGACAGCTCCACAAACTGTGTATGCTTCTGCCACTGAGATGGCTGATGCTGGTGTTAACCAGCCAAATTTCAACGTCTCGTGGAAATTTGATGTGGACACTTCTTTTAGCTACCTTGTTAGGCTTCACTTCTGTGATATTGTTAGCAAAGGGCTCAATCAACTCTACTTTAATGTGTATGTTAATGGGAAAATGGCAATCTCTAACTTTGATTTGTCAGCCACCACGGGTGCCTTGTCAACCCCATATTACAAGGACATTGTGGTGAATGCAACATTGATGACCGAGGGACTATCAATTCAGGTTGGTCCAACCTCTGGTGGTAGTGCAAGTGCCAATGCCCTTGTGAACGGCATAGAGGTCATGAAGATGAGCAACACTGTGAACAGTTTGGATGGAGAATTTGGGGTTGATGGAAGAAGTGTTAGTGGTTCTAGCCGCGGCACGGTGGCTGCAGTTGGATTTGCCATGATGTTTGGAGCCTTCGTCGGGCTCGGAGCTATGGTGATCAAGTGGCACAAGAGGCCTCAAGACTGGCAGAAGAGGAACAGCTTCTCTTCATGGTTGCTGCCTCTGCATGCTGGTGACACAAGCTTCATGAGCAGCAAGAACTCTATGGGAAAGAGCAACTTTTTCTCCTCATCAATGGGACTAGGCCGGTACTTCTCCTTCGCTGAACTTCAGGAAGCAACCAAGAACTTTGACTCAAAGAACATCATTGGTGTTGGTGGATTTGGCAATGTGTATTTGGGTGTGATAGATGAGGGGACTCAAGTGGCAGTCAAGAGAGGAAACCCTCAATCAGAGCAAGGCATCAACGAATTCCAGACAGAAATCCAAATGTTGTCGAAGCTCAGGCACAGGCACTTGGTGTCCTTGATTGGATACTGTGATGAGAATGATGAGATGATCCTGGTTTATGAGTACATGCCCAATGGACACTTCAGAGACCATCTTTATGGAAAGAACATGCCTCCTCTCTCATGGAAGCAAAGGCTAGAGATCTGCATCGGTTCAGCTCGTGGCCTTCACTACCTTCACACAGGCACAGCTCAAGGCATCATTCACCGTGATGTCAAGACCACCAACATCTTGCTTGATGAGAATTTGACAGCCAAGGTTTCTGATTTTGGACTTTCCAAGGATGCACCAATGGGGCAGGGACATGTTAGCACTGCAGTGAAGGGTAGCTTTGGTTATCTTGACCCTGAGTACTTCAGAAGACAGCAACTCACAGAAAAATCTGATGTCTACTCCTTTGGGGTGGTTCTGCTTGAGGCACTGTGTGCAAGGCCAGCCATCAACCCTCAGTTGCCCCGTGAACAAGTAAACTTGGCCGATTGGGCGATGCAGTGGAAGAGAAAGGGCTTGCTTGACAAGATCATAGACCCTCAACTGATTGGATCAATCAATCCTGAATCTATGAAGAAGTTTGCTGAGGCTGCTGAGAAGTGTTTGGCTGATCATGGAGTGGATAGGCCTTCAATGGGAGATGTTTTGTGGAACTTGGAGTATGCTTTGCAGCTTCAAGAGGCATTCACACAAGGAAAGCCTGAGGAGGCTCCTACTTCACCTCTCCCACAAGCACCTGCCACTCCTACTGATGACACTCCGACCCAGCCGCCGGCGCCAGCAGCACCAGCAGCACCGGCGGCGGCAGTGCCACGTGCAGAAGTGAATAATGCTACACCAGAAGTGCATTCTATTGATGACCATTCTGGAACTGCAATGTTTGCTCAGTTTAACAATCTCAATGGCAGGTGA

Promoter Sequence:
>Vu_33943::LG10:3224415-3226415(-)

TTAACGCCGTTTCACAACACTTAACGGTTATGGCAAAATGTGCTCACTTTTACAAAAATTATGACCCAATTGAGACAGAAAAAAACTTGAGGACCCAACTGAGATTTTCATACAAACTTGAGGACCAACGAAGGGTTTAAACCGATATTTTAAATCAAAATCAAACTTTAAGAAAATATGAAGGGTAATGAATTGATAATACAAAAAATTTCAAATTATTATTTTTTTAGTGAAATTTCAAATTTATTAATTTTAAATTATCAAGTTATTTTAATAAAATTCTAAAATTTTAGTTTATTTTCAAATTCATTATCCAGAAAATATATTTTATTATAAAATGTAAAAACATAATTATTCTGTTATAGTTTTTTATTCAACATACAGTAGAGTAGAGAGATAATTTGTCATAAAAACCTAAAAAATTTATTTTATTAAAATTTTATTCAGCACACACTAACACGAAAAAAAAAACGTGTATGACGTGATAGTAAAATGTTTTAATTTTAATGTATTTCAATTGAAAACTTTATACAATCAGAAATTGAGATTGTTACTATTTTTAGTTGATTTAAAAGTTAATAATATATATTATCAACAACAAAAAGGGGGGAAAATCTAGAACAAAACATCCAAAATTATTTTTCTCTTTGTTTTTACTTCGTGTAATTTGTTCTACAAATATATTAAATAGTTTTAGCCATAATATAAAAAAATGTATATGGATTTGGAGTGTAGTACTTTTTAAAATCAAAGGTATGACAAAATTACGATATATATATATATATATAATTGTAGGTGTATGATTTAAAAATAAATATTAAATAACTTAACCATCTAATTATATATGAGTTGTACATTCTAATAATTTATCTCAAACTTTTTAAATTGAGAGAGCTTTCTTCGGAATATAATTGCTGTGGTTTTTAGAAGTGCTTATTTTAGTGTTCTTGAATGTTAAAAAATGATCAAAAATTTAAAAAAAAAAAATCTCACACAAGTTGACTTTGTTTAATGTTTATAATTTTAGTCAAAGCTCTTTTCGTGGTCAAGAACACAATTCATTCATTTACATGCATGCTTGACATGTTCTCTACGTGCACTCACATAGTGTATGGTTTATTCATGAAAGAAAAAAAAAATTATATATATATACACTAAATATTAATCAAATACATAATAAATAAACTATACTTTACTTAAAAAAGTATGTACTTCTTTTTTACAATCTTGGTTATTTTAAAATGTCTAAATTATTTGAAATTTAATATAAAATTATAAAAACAATATCAAATTTCTAAGTCATATATATATATATATATATATATATTAAACAATTTTTACACATACTTTTTATTTATCATTTTATTTTTTAAATTTTTTTCTTTACAAATACGAAAGTTTAATTATTAAAATATGTCTAAAATGTGAGTTGGTAACTGTTAAAATAATGAATGTGAATGATAGAAAGAAAAAACATTTTCCTAAAATGTAAATCAAATTGTTAAAACACAACCGTGATGATCAACGAATTAACTTTTTATAAGCATGTATACAGGGTGTTGGTCGGTTTAACTTAGCCGAGCAGAGACAGTAAAAACAGGGTTTGGTTATGTTATTGTTACTGTTACTGCAGTTGCTGATATACTGCTATGGCAAATGAGAGCAGAGAATCTACGGCATTCAGAATCCGAGAATGCTGAAAAAATTGAGTGAGTTTGACATGTTCAAAGAAACAAAAATAGAAGATTCTAAAGATAGGAAAGAGAAACATGCAATGCACCAGAATAGAGAAAAGCAGAATGCAGGCTCCACATTGTTTGGCTAATTATTGGGAGCAGAGGTGATCCCTTCGTTTTGTTTCGTGCAAAGATTGAAACCGTTAGAGAGAGGAAAATCCCTTATAGGGAATCGAGAAGACCCCATTTCAGGCTTCTTTATTGTTGTTATTGTTCATTCTAAATTGAAAAAAATCCTCATCCTCATCCTCAACCCCAGGAGGT

Gene Sequence:

>Vu_33943(-)