Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_33939	LG10	3161044	3164559	hypothetical protein LR48	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	3162689	missense_variant	p.Thr549Ile
T/G	3162690	synonymous_variant	p.Thr549Thr
G/T	3162704	missense_variant	p.Arg554Met
T/G	3162707	missense_variant	p.Val555Gly
C/G	3162712	missense_variant	p.His557Asp
C/G	3162765	synonymous_variant	p.Val574Val
A/G	3162768	synonymous_variant	p.Leu575Leu
T/A	3162780	missense_variant	p.Asn579Lys
G/A	3162785	missense_variant	p.Arg581His
T/G	3162786	synonymous_variant	p.Arg581Arg
A/G	3162793	missense_variant	p.Thr584Ala
C/G	3162809	missense_variant	p.Ser589Cys
G/C	3162815	missense_variant	p.Gly591Ala
C/T	3162849	synonymous_variant	p.Ser602Ser
A/T,G	3162850	stop_gained	p.Lys603*
A/T	3162851	missense_variant	p.Lys603Met
A/G	3162862	missense_variant	p.Lys607Glu
A/T	3162911	missense_variant	p.Gln623Leu
G/C	3162915	synonymous_variant	p.Leu624Leu
T/A	3162920	missense_variant	p.Phe626Tyr
G/T,C	3162926	missense_variant	p.Arg628Pro
A/T	3162929	missense_variant	p.Lys629Ile
A/T	3162930	missense_variant	p.Lys629Asn
A/G	3162934	missense_variant	p.Lys631Glu
C/A	3162964	missense_variant	p.His641Asn
C/A	3162976	missense_variant	p.Arg645Ser

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_33939.1

MAAEMVTGVLVSTFLERTIDTLASRLVDIFHQRKHKKQLSNLKMKLLAIDVVAFEAEQKQFTDPRVRDWLLRAKDVVIDAEDLLDEIDYELSKTQVQAESQSASKKVWNSLDSSFFEIEFEPMMEQVIEDLEELAIQSDFLGLKKVGGVGVGSGSGSKLAHTSLPNESVIYGRDDDKEFVLNWLTSDTHNSLSILSIVGMGGMGKTSLAQHVFNDPRLEEANFHTKVWVSVPQEFDVLKVSRAILDTITGSTDNSIQHEVIQKRLKEELMGKKFLLVLDDVWNERPSRWEDVQKPLVFGGQGSRILVTTRSEKVAVTMRSEKRLLQVLEEDYCWDLFAKHAFENANPQPDSDFIEIGKKIVEKCNGLPLALKTMGSLLHNKSSLWEWESIMKSEIWDFSENESDILPALRLSYFHLPSHLKKCFAFCALLPKGSWFEEEWLIRLWMAENILENPLQKKSPKEVGEEYCNDLLSWSFFQQSRNEEKKSFIMHDLLNDLAKYVCEDICIRSGVDEPKGIPKTTRHCSFSSSKSDFDGFEGSSDTQKLHTFTPTDSRVWHCKMSIDDLFSRFKLIRVLSLYNCRSLTEVPKSVGNLKHLRSLDLSKTQIKKLPDSISLLYKLQILQLNFCRKLKELPPCLHQLHNLRRLELVNIGVKNVVAYLGKLNNVQVLMSSFHVEKSKENNFQQLGELDLHGSLTIDDLQNIESPSYALEVDLKNKPHLVELRLEWNFIGSSSVDSEKAEDVIENLRPSKYLKELSIRNYIGKQFPDWLLHNSLPNLVSLKLEGCESCQRLPPLGLFLFLKHLSIAGLNGIVSIGADFHGNNSSSFKSLETLYFSHMRQWEKWDCQAVTGAFPCLQYFSIENCPKLKGHLPKFVALKTLIVIECEQLEALIVSAVELRLQDCGKLPLERSTMKKLTMDGQGMAASLVAMVGHMLFDTSLEKLSICSESISDDCVSRRIFPLDFFPTLRTLQLIGFPNLQTISQNHVHNHLWHLEIKKCPNFESLPANMHMLLPSLFRLVIKECPRLESFSEGGLPLNLKDITLINCFRLVGSLKRALGDSPSLETLKIVEVEAECFPDEGLLPLCLSELIIKDCQNLKKLNYKGLLELSSLQSLNLWDCPNLQCLPEEGLPKSISFLYIDRCPLLEQRCNKEGGEDWEKISHIPHVHIYR*

CDS Sequence:
>Vu_33939.1

ATGGCAGCAGAAATGGTTACCGGTGTTCTAGTTTCCACTTTCCTCGAGAGGACTATCGACACTTTGGCTTCTCGTCTGGTCGACATATTTCATCAAAGAAAGCACAAGAAGCAACTCAGCAACTTGAAGATGAAGCTGCTAGCCATTGATGTTGTGGCGTTTGAAGCAGAACAAAAGCAGTTCACAGATCCACGTGTCAGAGATTGGCTTCTCAGGGCCAAAGATGTTGTGATTGATGCAGAAGATCTCTTGGATGAGATAGATTATGAACTCTCCAAAACCCAAGTGCAAGCTGAGTCTCAGAGTGCATCTAAGAAGGTGTGGAATTCCCTCGACTCTTCTTTCTTTGAAATTGAATTTGAACCCATGATGGAACAAGTCATCGAGGACCTAGAAGAACTTGCAATCCAAAGCGATTTTCTAGGTTTGAAAAAGGTTGGTGGTGTTGGGGTTGGATCAGGATCCGGTAGTAAATTAGCACATACATCTTTGCCAAATGAAAGTGTTATCTATGGCAGAGATGATGACAAAGAATTTGTCCTTAACTGGCTCACATCGGACACTCACAACAGCCTATCTATACTTTCTATTGTGGGCATGGGTGGGATGGGTAAGACCTCTCTTGCCCAACATGTATTCAACGACCCAAGGCTTGAAGAAGCTAACTTTCATACTAAAGTTTGGGTCAGTGTTCCACAGGAATTTGATGTTCTAAAAGTATCAAGAGCAATTCTTGACACAATAACTGGTTCCACTGATAATAGTATACAGCATGAAGTAATTCAGAAAAGACTGAAAGAAGAACTTATGGGAAAGAAATTTCTTCTCGTTTTGGATGATGTTTGGAACGAAAGACCATCGAGATGGGAAGATGTGCAGAAGCCCCTAGTTTTCGGAGGCCAAGGCAGTAGAATTCTTGTCACTACACGGAGTGAGAAGGTTGCTGTTACCATGCGATCAGAAAAGCGCCTCCTTCAGGTATTAGAAGAAGATTATTGTTGGGACTTGTTCGCAAAGCATGCATTCGAAAATGCTAATCCCCAACCAGACTCAGACTTCATAGAGATTGGTAAGAAGATAGTTGAAAAATGTAATGGACTTCCTTTAGCCTTAAAAACTATGGGAAGTCTATTACACAATAAATCATCCCTTTGGGAGTGGGAAAGTATTATGAAGAGTGAGATATGGGATTTTTCAGAAAATGAAAGTGATATACTCCCTGCTTTAAGACTGAGCTATTTCCACCTTCCTTCTCATCTGAAGAAATGCTTTGCTTTTTGTGCCTTACTTCCCAAAGGTTCTTGGTTTGAGGAGGAGTGGTTAATTCGATTGTGGATGGCTGAAAATATCCTAGAAAACCCTCTACAGAAAAAGAGTCCTAAAGAAGTTGGTGAAGAATATTGCAATGATCTATTATCGTGGTCCTTCTTTCAACAGTCAAGAAACGAAGAGAAAAAGAGTTTTATCATGCATGACCTGCTAAATGATTTAGCAAAATACGTCTGTGAAGACATATGCATCAGGTCAGGAGTTGATGAACCAAAAGGTATTCCCAAAACAACCCGTCATTGTTCATTTTCAAGCTCTAAATCAGATTTTGATGGGTTTGAGGGTTCGAGTGATACTCAAAAGTTGCATACATTTACTCCAACAGATAGTAGGGTTTGGCATTGCAAGATGTCCATAGATGACTTGTTCTCCAGATTTAAGTTAATACGTGTCTTATCTTTGTATAATTGTCGTAGCCTTACGGAGGTGCCTAAATCTGTAGGAAATCTTAAGCATCTTCGTTCATTAGATCTATCCAAGACTCAAATAAAAAAACTACCCGACTCAATAAGTTTACTCTACAAGTTGCAAATACTGCAGCTGAACTTTTGTCGAAAATTAAAGGAGCTTCCCCCATGTTTACATCAACTCCACAATTTGCGTCGTCTCGAATTAGTAAATATTGGAGTGAAAAATGTGGTAGCATATTTGGGAAAGCTGAACAATGTTCAAGTATTGATGAGTTCATTTCATGTTGAGAAAAGTAAGGAAAACAATTTTCAGCAATTAGGAGAACTCGATCTTCATGGAAGTCTAACAATTGATGATCTGCAGAATATTGAGAGTCCCTCCTATGCATTGGAAGTAGATTTGAAGAACAAACCACACCTTGTGGAACTACGGTTAGAATGGAATTTCATTGGCAGCTCCTCTGTTGATTCAGAAAAAGCTGAGGATGTAATTGAGAATCTACGTCCTTCAAAATATTTGAAGGAGTTGTCAATAAGGAACTATATTGGTAAACAATTTCCAGATTGGTTACTTCATAATTCATTACCGAATCTGGTGTCCTTAAAGTTGGAGGGATGTGAATCTTGCCAACGTTTACCTCCGCTTGGACTTTTTCTATTTCTCAAGCACTTGAGCATTGCAGGACTTAATGGGATAGTGAGTATTGGTGCTGATTTTCATGGGAACAACTCTTCTTCATTTAAATCCCTTGAAACATTGTATTTCTCCCATATGAGGCAATGGGAAAAGTGGGACTGCCAAGCTGTGACAGGTGCTTTTCCATGTCTACAATATTTTTCAATAGAAAATTGTCCCAAGCTGAAAGGACACCTGCCAAAGTTTGTTGCTTTAAAAACTTTAATAGTGATTGAGTGCGAACAACTTGAAGCTTTGATTGTGAGTGCGGTAGAATTACGTCTACAAGACTGCGGAAAGCTGCCGTTGGAGCGGTCTACAATGAAAAAGCTCACAATGGATGGGCAGGGCATGGCAGCATCATTGGTGGCAATGGTTGGACATATGCTATTCGACACTTCTCTTGAAAAGTTGTCCATTTGTTCAGAGTCAATAAGTGATGACTGTGTCTCTCGAAGGATCTTTCCACTTGATTTCTTCCCAACACTCAGGACTCTTCAACTCATTGGATTTCCTAATCTACAGACGATTTCACAGAATCATGTTCACAATCATCTCTGGCATCTGGAAATCAAAAAGTGCCCTAACTTTGAATCATTGCCTGCAAACATGCATATGCTGCTTCCATCTCTCTTTAGGCTAGTGATAAAAGAGTGTCCAAGACTTGAGTCGTTCTCTGAAGGAGGTTTGCCATTAAATCTAAAAGACATCACACTGATTAATTGCTTTAGACTTGTTGGCTCACTCAAAAGAGCTTTAGGAGACAGTCCTTCGTTGGAAACTTTAAAAATTGTAGAAGTAGAGGCGGAATGTTTTCCTGATGAAGGTTTGCTTCCACTCTGTCTTTCTGAACTAATAATAAAAGATTGTCAAAATCTAAAAAAACTGAACTACAAGGGTCTCTTAGAACTCTCATCTCTTCAATCACTGAACCTTTGGGATTGTCCCAACCTCCAATGCTTACCAGAGGAGGGTCTTCCCAAATCAATTTCATTTCTTTATATAGACAGATGTCCTTTGCTGGAACAGCGATGCAACAAAGAAGGAGGCGAAGACTGGGAAAAGATTTCTCACATTCCACATGTACATATATATAGGTAA

Promoter Sequence:
>Vu_33939::LG10:3159044-3161044(+)

AAACATTAAGGTTTAACTCTCCTTATAAAAACATGTTGATGAAAATCTTTAGGGAATTCCAAGTACTAACTTAAACTAAGGCTAAGAAAAAGAAAAGAAAGTTGGAGAAAAATATTTAGAAACTCTTTTTTTATTTTTTTTTAAGTCTTAAAATGATTCTTTTTAATATGCTTATATGTGTTTTGTAGGATCCAATAAAGGTAGGAGATAATGGATGAACCATCCAAGAAGCTTGGAAAGTTAAGAGAAGCAAAGAAGCTAAAATAAGGAAGAAAAGGAGGGTTTTTCGGATTTTGAAGCTTGACTTCCGGATTGGACTCATGAAAGAATTTACCTTCCGAATTCAGATTTGGCTAAGCCAAAACCACTGCGCGGCCAACCACTGCCTATCAGATTTCAATTTTTACATGTTTTCCATGTGTGTTTGAAGTGAGAAGCGTGATCCATCTAGCTTGGCTCCCAAGCTCGAATTATATTTGAATTTTTAGAGAGAATTTGGCAGAGATTAGAGATTCATCTTTCACCTATAAATAAGAGTCAATCTCTTGTATTTTTCACTTTTGGATATAATGAATTGTTGCAGAGTTGTTTGCTTAACTTATATCCTTAAGTCATCTCTGAATTTCGAATTCAGCCACTCTCTTCTAGCTTCCTTCCTTAGTAGGAAAGCTTTGAGTTTAAAAGCTCCAAACACACACCATACTTTCATTTACACTTTCATCAAACACCTTACATGCATTATCTTTCATTGCTTCAATTAATTTCCATTCCGCTGCACTCTAGTTCAAGGAAGTTGTCTGATGCCTCGACATGCTTCCATCACATGTATCATGCACAAGAATCAAATCCATAACCACTAACTCAACAAGAAGTTTTAGATCCTCATAACTCATGTGTTTCACTTCACCCCTATATAACTTGTCTTTTTTCTTATTTTAATTAGTAATATCTACGTTCCCTATCTTTCTAGATCTTTTATTTTATCAAGGCCTTATAATCTCTCTACCTGACCACAATGAGCCTGACACACAAATACAGGGGTAGCTTAGCATAAGAACATCCAAGTGTAGAAAAAAAAAAAGGAAGTTTGGAGCTTAACATGCTCGAACAATATAAAAGAAACTCAACAAAGCCGATCAAACATTCAAGCGTGTATTTGCTTAATTATATATAATGTGTTTAAATAGTTTATATTTACTTAATAAAAAAAAAAGGCACACAAGTTTAAGAAAAATAAGAGAAAAAAAAACGAGAGATTAATATGCCCTTGAACTTTTTTATCCTATTTTTATTTCATTTTTAAATTTTTTACTTTTTCTCATTACATCCCTTATCACAAGATATATCACTTTTTTTTCTCTCTTTCTTTTATTTTTTTAATCTGATTATATCATTACATATATCACTGGTTTTGTTATCTTTGAATAATTTACAACTATTTTCTTTTTTTATCTTTCCTATCTCATTTCTTAGCTTTTATTTTTATTTATTATTATTATTATTATTCTCTGTAATCATTCTCTTTTTTTTGTTTCGACTCCATTCACTCGAAGACATAGAAGATGGGTTGCGATTCATTTTTTATATTATTAGAAATAGTAATGATTTTTTTACGTACCTAAATTTTATATAATTCTTTTCTTAAAATGATATAATTTATACTTTTATAATTATTTTATTTTTATAATCTATATTAAATGTAAAAGTGTTTCGTAACATCATTATGTCGTTAATGTAAAGGAGAAGTTGTCAACCTTCTCTTTAACACAACCACTCATTATTTACGGTAGTAGAGTACAGCTTGTGAACAAGAGTGCTGTCGGAAGACTCAATACTCTTTATTGCTTGTTGACGAAAAAGTTCACCGGCCTTAATTCAAGGCTATCATTAAAAAATGACCTTATTGACATTATTTCCATTGCACTGCACCTAGTCAAAGGCATAAGCTTCACTTCAAATCTCACAGTCTCGTTCATCCTCTCTCTTCTCTATTGTTATCA

Gene Sequence:

>Vu_33939(+)