Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_33612 LG9 46757471 46758998 PREDICTED: squamosa promoter-binding-like protein 3
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/C 46757477 stop_gained p.Leu172*
T/A 46757706 missense_variant p.Thr96Ser
T/G 46757711 splice_acceptor_variant&intron_variant
A/C,* 46757718 splice_region_variant&intron_variant
G/A 46757740 upstream_gene_variant
C/A 46757752 upstream_gene_variant
G/T 46757797 upstream_gene_variant
T/C 46758076 upstream_gene_variant
T/A 46758184 upstream_gene_variant
T/C 46758244 upstream_gene_variant
C/T 46758249 upstream_gene_variant
T/C 46758251 upstream_gene_variant
A/T 46758260 upstream_gene_variant
A/G 46758335 upstream_gene_variant
C/T 46758367 upstream_gene_variant
G/A 46758800 missense_variant p.His67Tyr
C/A 46758891 synonymous_variant p.Gly36Gly
C/A 46758896 stop_gained p.Glu35*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_33612.1
MRGERLKRDMVDCGDNQKGYVELRQEKKKKKKGEEGKKGCVNGGMLCCQAEKCNADLHEAKQYHRRHKVCECHAKAQVVLVHGTKQRFCQQCSRFHELSEFDDAKRSCRRRLAVHNERRRKNSSDQSQAEGSSHHKGSEVPQMKDIACGQANDRGRTHITIQENSAYKKFQIR*


CDS Sequence:
>Vu_33612.1
ATGAGGGGTGAGAGGTTGAAGAGGGATATGGTAGATTGTGGTGATAACCAAAAAGGGTACGTGGAGCTTCGGCAGGAGAAGAAGAAGAAGAAGAAAGGCGAGGAAGGGAAGAAAGGGTGTGTTAATGGTGGCATGCTGTGTTGTCAAGCGGAGAAGTGCAACGCAGATCTGCATGAGGCCAAGCAATACCACCGGAGGCACAAGGTGTGTGAGTGTCATGCCAAGGCTCAGGTTGTGCTTGTTCATGGCACCAAACAACGGTTCTGTCAGCAATGTAGCAGATTCCACGAGTTGTCAGAATTTGATGATGCAAAAAGAAGTTGCCGCAGGCGTTTGGCTGTACACAATGAACGGAGGAGAAAGAACTCTTCTGATCAATCTCAAGCAGAAGGGTCAAGCCACCACAAAGGGTCAGAGGTCCCTCAAATGAAGGACATTGCTTGTGGTCAGGCTAATGATAGGGGAAGAACTCATATAACGATACAAGAAAATTCTGCTTACAAAAAGTTTCAAATTAGATAA


Promoter Sequence:
>Vu_33612::LG9:46758998-46760998(-)
AATTACCTGATTAAGCATCCACTTGAAGCCCATAACTCTTCAACAAGGTCTCAAACCATCCACTAACATTGATATTTGCATTGTCAGTATGCAAAAAAATCCGATAGGTTGTGAGTAGTGCAAGTAGGGTGCTTTCCATTCTTCTACACTAGAAATATGACATGAGTGTTGATGACTCTCTTTTCCAATAACTTGGTATTTACACAAACTCTTATTGGTTTCTCTAAATTAACTAAACAAATGTATAGTCCACATGTTGCAGCCATGACTAAAAGTACCAACCTCAATGTTGATGGAAAATTCTTAGTATGTCCATGGAATCCTCAAAAATGAAGTAGTCACCACATGTCACAATGAAATTGTAAGCTAATGTGATTAAGATTCAAGACAGAGAAAAAAAAATGATGATAGCAATGATTGATACTGCCTAGTTTTCTCACCTTCTCCAGGACAAATAATTGTTGAATCATGTTTGGAATGAAGACAACAACAAATATCCCTCTTCTTGAGCTGACAAAAGTTAATTCGAGAGCTGAGCAGTGGCGAAGAGCGAAATCTAGAGCGGAGAAGAACGGAACTGAATCCGGGCGGAGCAAACACGCTGTATTTCGAACCCTAGCTGAGGCGCCACAAGGAGGTGCTCGCGGCGGCTACTACGGAGAAGGAATGGCCAGCGACTGTCGCGCGGCGGTTTTGTCGACGCTGATGGTGGACGAGGCGTGGCATCTCTCGACGCTGAAGGCCTGGTTCACGAGGGTTTGGAAGTGGTGGAGCACGCAGTAGTGGCCCGTCGATGCAGGCAGCGGTGGGATCTCCGGAAATGACATCTTAGAGTTTAAGTGTTGCGTTGAGCGCGAGAGAGAAAGGGATGGAGGAGCAAGCTATTCTGAGCAGGCGCACAGTGGCCGTGACGAGGCTCGCCGGAATCTTCGCCAGCGTTTGAGCGCAGTGAGGGGTAAAGGAGGAAGCCTGATGCGTTTGTTGTATGGAGTAGAAGAGACCGAGTGTTCTGTTCTGTGTTGGCTTTTGTGTGTAATGATTGCGGAGAAGAAGAATAACCTGAAATTGGGAGAGAAGAGACAATCAAATTTTTGGAGGAACGGTTGAAAAAAATGAAAATTAGCTTTTAGATAATTCACCAGGTTCATCTAAATCATGTTAAGTTGTACCAGGTTTTTATAATTTCTGCAAAATAACTCTTATTAAATATTTTTTTTATCGAAATATCATTCTCCGGAATATGATATGATATGCACTTGTCTGGGGAAAGATTTAGAATATTATCACCTTAAAAATATAAATTTTGTGATCAGCAATTTTAAGTGTGTAATTGGTGAGATTGTTGCAGTTGATTTTCTGACAGATAATTATATATACATGTGCATCTTCACTTATGCTGTAACTACGTTTTTAGCATGAGTATTCCTATGTAATCTTGAATACACCTGTCGCTATCATTATATATCTTTATTTTCGTGAGAAAAAAAATTGTTTTTCTGGTGTAACATAACATGTGTTCATTGATATCTCATCATTCATATATATGTGTTTGTGTATGCATTTGAATGAAGATTTTTAACGTGAAAAGACTTGTTTATTTTACTGACAGGACGTGTTGAGGCTCAATGAACCACACAAGAACATCATCGTCTATTCTTCTGTCACAACTGTCACGATCCCGCCACTTTACCACAATTCTCACACTCCATCTCCTTCATTCAATGATTCCACTTGGTTTCAAAGTGAACATAGAAAAAAAAAAGATTCATTTGGTTTGAGTCTCTTTCACTTTTACACCCCTCACCGTCTTCTAGTTCCATGTAACACCACGTCGCAAGAAAACAAAACCAATAAGGGAGGTGGTGAGGAAAATATGGAGCACTTTGTTGTGGTGGTCCTCAGTTCTCTCTCTCTAACACTTTCCTCCTTTATATAATTCCTTTGCCATCACCCTATTGCAGCCATTCTTCCATATGGAGGGGTTGGAGCCAAAGGTGGTG


Gene Sequence:
>Vu_33612(-)
ATGAGGGGTGAGAGGTTGAAGAGGGATATGGTAGATTGTGGTGATAACCAAAAAGGGTACGTGGAGCTTCGGCAGGAGAAGAAGAAGAAGAAGAAAGGCGAGGAAGGGAAGAAAGGGTGTGTTAATGGTGGCATGCTGTGTTGTCAAGCGGAGAAGTGCAACGCAGATCTGCATGAGGCCAAGCAATACCACCGGAGGCACAAGGTGTGTGAGTGTCATGCCAAGGCTCAGGTTGTGCTTGTTCATGGCACCAAACAACGGTTCTGTCAGCAATGTAGCAGGTTTGGGAGGTTCGACTTTTGTGTTTTTAACCTTTTCTCTCTTTGTAAAAAGTCTAATCACGTCAATCAGAAGCTAAGTATTTCTGCTTCTGTGTATTCATGCATCAAACGTTGAGAGAACGTCGGATCCACGTTTTTCTAACCTGTTACAAACACCTATTAGGTTTGCTTTTCCTGTTTCATGGAGGTGTTTTGTTCTTGCTAAGTTCTTTTGATGAAAAGAAAAGACAAAACTTACTGCTTATATGAGTTTACATCAAATACTTTAATTAGTATTAAGATGGAATTCTATATCTCTGGTAAGAGAATACCAAAATAACCAGAAAACTGGATCTGAATTTTGTTTTAGAGGGAGTCGTCTTGAAATTCAAGGTGCATGAACTGTTTCCATCTTTTAAGTTGGATAGTTTGGAGATATTGGAAGCAAATCGAGTTTGAGTAGAATTTGTCGTTTTAATGATTTTTGAAGTTGTATGTGTTGAACTCAAATGATGATCTAAAAATTATTTAGTCACACTGGAATCAAAGACTTGAGTGTGTGGTGTTAGAGGACTGTTCCCTTTCTATTATGTTGAATTTAATGTAACTTCAGTTATCAAGATATAGACTGATTCTGTCATGTTGAAATTGTAATCAAACTCATCTTACTCTGTGAAGTGATTGTTTGATGTCTTCTGAAAGACAAGCTTTTGCATGAGCCTACTGAGATGTTTTACTTTATGGAATCATGAAGTTCAGAAAAGGATAATAATTTGGATATGTTAATATGCAAAGTCAAGGATACTGAAGTTTATATTTGGCATATGTGAATCTGTACGGTGTGTTTGGAGCAATAACAGTCTTCTTTTTCCTCTTCTGAGGTAAAAGAAGAAGACAATTCTGCTACCAGAATTTCGCTATAATCTTATTTGTTCTTTCTCCCTATTTGGCATGTCAAAATTGGCTAGCAAGATCATGTTGATGTTGTGTTTATGTATCTGATCTGAAATAAGAAATTGTTATGCAGATTCCACGAGTTGTCAGAATTTGATGATGCAAAAAGAAGTTGCCGCAGGCGTTTGGCTGTACACAATGAACGGAGGAGAAAGAACTCTTCTGATCAATCTCAAGCAGAAGGGTCAAGCCACCACAAAGGGTCAGAGGTCCCTCAAATGAAGGACATTGCTTGTGGTCAGGCTAATGATAGGGGAAGAACTCATATAACGATACAAGAAAATTCTGCTTACAAAAAGTTTCAAATTAGATAA