Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_33610 LG9 46731875 46733327 PREDICTED: zinc finger CCCH domain-containing protein 2
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 04121 Ubiquitin system [BR:ko04121]
SNP Position Effect Amino acid change
T/C 46731987 3_prime_UTR_variant
G/T 46732018 3_prime_UTR_variant
A/G 46732259 missense_variant p.Ser336Pro
A/G 46732264 missense_variant p.Ile334Thr
T/A 46732285 missense_variant p.Glu327Val
G/T 46732398 synonymous_variant p.Ala289Ala
C/G 46732440 synonymous_variant p.Ala275Ala
C/T 46732542 synonymous_variant p.Ser241Ser
G/T 46732665 synonymous_variant p.Leu200Leu
T/C 46732696 missense_variant p.Asp190Gly
A/G 46732833 synonymous_variant p.Phe144Phe
C/A 46732867 missense_variant p.Arg133Leu
C/T 46732899 synonymous_variant p.Val122Val
C/T 46732908 synonymous_variant p.Ser119Ser
G/C 46732940 missense_variant p.Arg109Gly
A/G 46732956 synonymous_variant p.His103His
G/C 46733040 synonymous_variant p.Ala75Ala
A/G 46733055 synonymous_variant p.Asp70Asp
T/A 46733056 missense_variant p.Asp70Val
C/T 46733111 missense_variant p.Asp52Asn
G/T 46733240 missense_variant p.His9Asn
T/G 46733265 5_prime_UTR_variant
G/C 46733315 5_prime_UTR_variant
T/G 46733327 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_33610.1
MSSVCSDQHKFHPSRQFLSPNKTPREIDVPPRKLLTCRAAAACGGSELFSDDTMLQKFLPSNNLDDSDEDDPYSADHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCNRGDACEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSPSSNDISCKKNINNLFNHASRSNNNGCCVFCHCVSSSSSSSTASPTSTLFNMSHYSPPLSPSSSSSSPPPSPLKPRKGVSVSPISLYGAANVNPRHGVVSYKEAFAEFVNSLEGLSLNEGSPVSGAKTLNLPWIDVSLNCEEQQRQPLIASSFGCEDQQKFIFSPSSTQTPTNVAFCSNRFTGNNNNNVVGADSNVPDLAWVNELLM*


CDS Sequence:
>Vu_33610.1
ATGAGCAGTGTCTGTTCCGACCAGCACAAGTTTCACCCCTCTCGTCAATTCCTCTCTCCCAACAAAACCCCCAGAGAGATTGACGTCCCTCCAAGGAAGCTCCTCACTTGCCGTGCTGCTGCTGCATGCGGTGGCTCTGAGTTGTTTTCTGACGACACCATGCTGCAAAAGTTCCTTCCTTCCAACAACCTTGATGACTCCGATGAGGATGACCCTTACTCCGCCGACCACTTCAGGATGTTTGAGTTCAAGGTCCGCCGGTGCACTCGCAGCAGGAGTCATGACTGGACTGACTGCCCTTTTGCTCATCCCGGAGAAAAGGCTCGCCGCCGTGACCCTCGGCGGTATCACTACTCGGGAACTGTGTGTCCTGAATATCGTCGTGGAGGGTGCAATCGTGGTGATGCATGTGAATTCGCTCATGGAGTATTTGAATGCTGGCTGCACCCTGCAAGATACAGGACAGAGGCCTGTAAGGATGGAAAGAACTGCAAGAGAAAGGTTTGTTTCTTTGCACACACACCTCGCCAGCTGAGAATTTTACCGGTAACTTCTCCTTCTTCGAATGACATTTCATGCAAGAAGAACATTAACAATCTCTTCAACCATGCTTCAAGATCCAACAACAACGGCTGTTGTGTTTTTTGCCATTGTGTTTCTTCTTCCTCTTCTTCTTCCACCGCTTCTCCAACTTCAACCCTCTTCAACATGTCTCATTACTCGCCACCGCTATCTCCATCCTCCTCCTCCTCCTCACCACCTCCTTCTCCCTTGAAACCCCGAAAAGGGGTTTCTGTTTCTCCAATTTCCCTATATGGTGCTGCGAATGTAAACCCTCGTCATGGGGTGGTGAGTTACAAAGAAGCCTTCGCTGAATTTGTGAACTCCTTGGAGGGGTTGAGTTTGAACGAGGGTTCTCCTGTTTCTGGTGCCAAAACATTGAACTTGCCTTGGATTGATGTTTCTCTGAACTGTGAGGAACAACAGCGACAACCGCTCATTGCTTCTTCTTTTGGCTGCGAAGATCAGCAGAAGTTTATTTTTTCACCATCCTCCACTCAGACACCCACAAATGTTGCGTTTTGCAGCAACAGATTCACAGGCAACAACAACAACAACGTTGTCGGTGCTGACTCAAATGTCCCAGATCTTGCGTGGGTAAACGAGTTGCTGATGTAG


Promoter Sequence:
>Vu_33610::LG9:46733327-46735327(-)
TAAATAATATTAAAAATTTAAATACAAGACGTGAAAAGAGATTTATCAGCTTAAGATAAGTAAATTTTAATTGGAGATTCACAGGTTGTGTGAAGATTCTATTTAATACTAAGTCTTCTAAAATGAAATATAGTTAGCATTAATTATAGAGATATTGTTAATTTGAGAAATGATGTGTTTAATCACAATTTTTCTTTCTAAAAGGTATTTTATAAGCTAAAAGAGAACAATTTTTTTGTATTAATCCTTAAATAATGTGGGATTTTTAATTTATTATTTCTTAATTAACCTAATATGTCTTTAAGGATAAACTGGTGAAGGAAGCACTGGATTCCAAAAGTTATTGATATGTATAAGTAAAGTATTTTGAAGTGATATTTTTAAATTTACAAAGAAAAAACAACTTACTGACAATTTAATATATTACTATTTTAAATATATATATTTTTAATTTTAAATTATTAAAGGTAAAAACTATACGTATAATTTTTTTAATAAAAAAAGAATGAAAAGAATCAATATTTGACTACATAAGTTTAAAAAATGATGACTTTTCTTCCAAAAAAATCAATTGTGTTTATATTTTCCAACATGAATAATGACAGTCTTAGTTAAATAGATAATATTACTAATATTCCTGAACAAATTAGAACAATGTTAGAAATGAATCAAACTGCTTGAACCCTTCTCCTGAAACCATTCCAACATAAAACAAGGGAGAATTATTAATTCATGAATTTAACATGTATTGTGAGTTTTGAGGGAGTGGTTGAGAAATCAAAAGCTTTCATTATATCTAATTCATCTTGTGTATATACTGATTTCCTAAACTTCAGGTTTTGAACTTTTAGTTTAGGAAGTGTCAGTTATGGTTTCATCAATTATGTGGATTGATTATTCTTTATTGAAAAAGAAAGTGCAGAAATTTTTTAAAGCAGAAATAGGCATTAAAGTTTGGTCTCCTTTTTTTCCTCAAATTCTAACTCCCAGATGACCAGGGAAACTCAAAAGTTGTTTGCATTCATACAATTCAACAGCTCAACAATGATGACAAAAACCCAATTTTCAATTTTCTAGGATAGACATGGATACCTCAGAAACCAGTGCTTGTATATGCTTTCTCTATTAATTATCAGTTTTTGTGTTAATTTTCTGGTCATTATTAGTATGAAATGATGAAGAAATGAGGCTTTGTGTCCATAGGAAGAGATAAAACCAATGACATGCTACTGTTTCTGGTATGAGCATAAAACCATGACACTATGGTAATAACATGATGATGGTAAAAAATGGTAGCAAGATTTTGTAATTTATTCAAACAGTTTAATTTTCAATAGGTGCAGTGAATTGCATTGCAGGGTCTAACCAGTACAATTCACGGTTTCCCATCCGTCATATATATGTTATCACATCTCTTTTAAGGTTCAACCACTTCCCTTCTTCAGTAGTTGAACCATTATTTTACGGAGAGAACGTGAATTTTCTTTGTATCTCTCTTTTGTTACTATGTCAGACTCATAATCACACTTTTATTAAGTGTTATGGGAGTGCTAAAACCTCTAATGAAATGTTATGCATTGCTTGGTTCTTCCGAAGAGACAATTGGTCAAAAATTTTATGAACACTTCTTTTGAGTCAAAGGAGAAAGAATAAAGAGAAACAAATGCAATGAAAGAAGAAGTGGAAGAAAGTGAGGTAGATGGAGCCCTCTTAACGTGATCTAGAATTTTCATGTTAGATGTGATGACAGCATCTCAAAATGGGATGAGATATCAGTAACTGAGAGAAGCTGTAAGAGAATTACACATAGCTAAAATTGGTGTTCCCAATGAATTATGAAACTGCCACATACCCTCTTTTGCATGTTCATCCCAAATGCTACAATGCCACGCACCTCCTTCACTGTCCCTACATTCCATCCTTCTTACCTTTTCTCTCTCTTCTCACTTTCTCCCTCTGCATCTACCCTATATAACTCACAACACCCTTTTCTTTCCCTC


Gene Sequence:
>Vu_33610(-)
AACATTCACTCACTCTTTCTTTCTTCTTATTCCCTTTCTCTTTCATCATTCAAGGTTCTCAAAATGAGCAGTGTCTGTTCCGACCAGCACAAGTTTCACCCCTCTCGTCAATTCCTCTCTCCCAACAAAACCCCCAGAGAGATTGACGTCCCTCCAAGGAAGCTCCTCACTTGCCGTGCTGCTGCTGCATGCGGTGGCTCTGAGTTGTTTTCTGACGACACCATGCTGCAAAAGTTCCTTCCTTCCAACAACCTTGATGACTCCGATGAGGATGACCCTTACTCCGCCGACCACTTCAGGATGTTTGAGTTCAAGGTCCGCCGGTGCACTCGCAGCAGGAGTCATGACTGGACTGACTGCCCTTTTGCTCATCCCGGAGAAAAGGCTCGCCGCCGTGACCCTCGGCGGTATCACTACTCGGGAACTGTGTGTCCTGAATATCGTCGTGGAGGGTGCAATCGTGGTGATGCATGTGAATTCGCTCATGGAGTATTTGAATGCTGGCTGCACCCTGCAAGATACAGGACAGAGGCCTGTAAGGATGGAAAGAACTGCAAGAGAAAGGTTTGTTTCTTTGCACACACACCTCGCCAGCTGAGAATTTTACCGGTAACTTCTCCTTCTTCGAATGACATTTCATGCAAGAAGAACATTAACAATCTCTTCAACCATGCTTCAAGATCCAACAACAACGGCTGTTGTGTTTTTTGCCATTGTGTTTCTTCTTCCTCTTCTTCTTCCACCGCTTCTCCAACTTCAACCCTCTTCAACATGTCTCATTACTCGCCACCGCTATCTCCATCCTCCTCCTCCTCCTCACCACCTCCTTCTCCCTTGAAACCCCGAAAAGGGGTTTCTGTTTCTCCAATTTCCCTATATGGTGCTGCGAATGTAAACCCTCGTCATGGGGTGGTGAGTTACAAAGAAGCCTTCGCTGAATTTGTGAACTCCTTGGAGGGGTTGAGTTTGAACGAGGGTTCTCCTGTTTCTGGTGCCAAAACATTGAACTTGCCTTGGATTGATGTTTCTCTGAACTGTGAGGAACAACAGCGACAACCGCTCATTGCTTCTTCTTTTGGCTGCGAAGATCAGCAGAAGTTTATTTTTTCACCATCCTCCACTCAGACACCCACAAATGTTGCGTTTTGCAGCAACAGATTCACAGGCAACAACAACAACAACGTTGTCGGTGCTGACTCAAATGTCCCAGATCTTGCGTGGGTAAACGAGTTGCTGATGTAGAAGGTGAAGATGGTGACGAAATTGGTAGTGAGATGACTCCTGATACAGTGAATGAAACTGTAAATACCGCGGAGAAACATAATGTGTCTCTGGAGTCTATTGTTATTATTAATTATTGTTGCAGTTCATTGCTTTCTGAATTTGTTAAGTTTGTCACAAATTATGTAATTTGGATTTCATCTTGTTCAATGCATAAGGGAATATTTTGGGT