Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_33578	LG9	46055776	46057870	hypothetical protein	Map

Annotations

category		relationship type		keyword
Cellular Component		located in		cytoplasm
Molecular Function		enables		ADP binding, ADP binding

SNP	Position	Effect	Amino acid change
A/C	46055782	missense_variant	p.Asn3His
A/G	46055785	missense_variant	p.Lys4Glu
C/T,A	46055791	stop_gained	p.Gln6*
A/C	46055792	missense_variant	p.Gln6Pro
A/T	46055793	missense_variant	p.Gln6His
C/G	46055794	missense_variant	p.Gln7Glu
T/C	46055815	synonymous_variant	p.Leu14Leu
A/G	46055817	synonymous_variant	p.Leu14Leu
A/G	46055820	synonymous_variant	p.Gly15Gly
A/T	46055829	missense_variant	p.Gln18His
A/G	46055841	synonymous_variant	p.Arg22Arg
A/G	46055844	synonymous_variant	p.Leu23Leu
G/C	46055845	missense_variant	p.Glu24Gln
G/C,A	46055854	missense_variant	p.Asp27Asn
A/G,*	46055855	missense_variant	p.Asp27Gly
T/C	46055859	synonymous_variant	p.Cys28Cys
C/T,*	46055862	synonymous_variant	p.Ser29Ser
G/A	46055869	missense_variant	p.Ala32Thr
C/T	46055872	missense_variant	p.Pro33Ser
C/T	46055873	missense_variant	p.Pro33Leu
G/T	46055877	synonymous_variant	p.Pro34Pro
A/G	46055886	synonymous_variant	p.Leu37Leu
G/A	46055887	missense_variant	p.Glu38Lys
C/T	46055893	synonymous_variant	p.Leu40Leu
G/A	46055896	missense_variant	p.Val41Ile
C/T	46055917	missense_variant	p.Leu48Phe
C/G	46055919	synonymous_variant	p.Leu48Leu
T/G	46055925	missense_variant	p.Asn50Lys
T/C	46055928	synonymous_variant	p.Asn51Asn
G/A	46055929	missense_variant	p.Val52Ile
T/C	46055934	synonymous_variant	p.Asn53Asn
T/C	46055941	synonymous_variant	p.Leu56Leu
G/T	46055944	missense_variant	p.Val57Leu
G/C	46055947	missense_variant	p.Ala58Pro
T/C	46055964	synonymous_variant	p.Ser63Ser
G/A	46055966	missense_variant	p.Ser64Asn
T/C	46055976	synonymous_variant	p.Asn67Asn
C/A	46055986	missense_variant	p.Leu71Met
T/G	46055996	missense_variant	p.Leu74Trp
G/C	46055997	missense_variant	p.Leu74Phe
A/T,G	46055999	missense_variant	p.His75Arg
G/C	46056002	missense_variant	p.Cys76Ser
T/C	46056012	synonymous_variant	p.Gly79Gly
G/T	46056025	missense_variant	p.Asp84Tyr
A/G	46056031	missense_variant	p.Lys86Glu
A/G	46056035	missense_variant	p.Glu87Gly
G/A	46056036	synonymous_variant	p.Glu87Glu
T/G	46056048	synonymous_variant	p.Leu91Leu
A/G	46056058	missense_variant	p.Lys95Glu
A/C	46056059	missense_variant	p.Lys95Thr
G/C,A	46056062	missense_variant	p.Gly96Glu
C/T	46056071	missense_variant	p.Ala99Val
A/G	46056073	missense_variant	p.Asn100Asp
G/C	46056076	missense_variant	p.Glu101Gln
A/G	46056079	missense_variant	p.Asn102Asp
T/C	46056087	synonymous_variant	p.Leu104Leu
G/A	46056101	missense_variant	p.Arg109Gln
A/G	46056102	synonymous_variant	p.Arg109Arg
T/C	46056109	synonymous_variant	p.Leu112Leu
A/G	46056112	missense_variant	p.Asn113Asp
C/A	46056121	missense_variant	p.His116Asn
C/T	46056128	missense_variant	p.Pro118Leu
C/T	46056144	synonymous_variant	p.Ile123Ile
C/T	46056148	missense_variant	p.His125Tyr
T/C	46056152	missense_variant	p.Leu126Pro
T/G	46056154	missense_variant	p.Tyr127Asp
T/C	46056157	missense_variant	p.Trp128Arg
A/G	46056160	missense_variant	p.Lys129Glu
G/C	46056163	missense_variant	p.Asp130His
T/A	46056165	missense_variant	p.Asp130Glu
A/G	46056178	missense_variant	p.Arg135Gly
G/T	46056179	missense_variant	p.Arg135Met
C/T	46056185	missense_variant	p.Pro137Leu
C/G	46056188	missense_variant	p.Ser138Trp
A/G	46056190	missense_variant	p.Asn139Asp
A/G	46056191	missense_variant	p.Asn139Ser
G/T	46056195	missense_variant	p.Trp140Cys
A/G	46056197	missense_variant	p.Asp141Gly
C/A	46056198	missense_variant	p.Asp141Glu
A/T	46056203	missense_variant	p.His143Leu
T/A	46056204	missense_variant	p.His143Gln
C/T	46056208	missense_variant	p.Pro145Ser
G/T	46056214	missense_variant	p.Val147Phe
G/T	46056217	missense_variant	p.Asp148Tyr
A/G	46056218	missense_variant	p.Asp148Gly
G/C	46056223	missense_variant	p.Gly150Arg
G/A,*	46056238	missense_variant	p.Glu155Lys
C/T,*	46056250	missense_variant	p.Arg159Trp
G/T,*	46056255	missense_variant	p.Lys160Asn
G/A,*	46056258	stop_gained	p.Trp161*
G/*,A	46056292	missense_variant	p.Val173Met
T/C	46056300	synonymous_variant	p.Phe175Phe
G/A	46056335	missense_variant	p.Gly187Glu
G/A	46056358	missense_variant	p.Glu195Lys
A/G	46056359	missense_variant	p.Glu195Gly
C/G	46056363	missense_variant	p.Cys196Trp
T/G	46056372	missense_variant	p.His199Gln
A/G	46056380	splice_region_variant&intron_variant
T/G	46056382	splice_region_variant&intron_variant
A/G	46056391	downstream_gene_variant
T/C	46056392	downstream_gene_variant
T/C	46056400	downstream_gene_variant
A/G	46056437	downstream_gene_variant
T/G	46056438	downstream_gene_variant
C/A	46056446	downstream_gene_variant
C/G	46056492	downstream_gene_variant
T/C	46056546	missense_variant	p.Tyr215His
G/T	46056573	splice_donor_variant&intron_variant
A/T	46056588	downstream_gene_variant
C/T	46056598	downstream_gene_variant
A/G	46056602	downstream_gene_variant
T/C	46056607	downstream_gene_variant
C/G,A	46056610	downstream_gene_variant
C/T	46056615	downstream_gene_variant
C/T	46056618	downstream_gene_variant
A/C	46056619	downstream_gene_variant
A/G	46056620	downstream_gene_variant
A/G	46056624	downstream_gene_variant
A/G	46056627	downstream_gene_variant
A/G	46056633	downstream_gene_variant
C/T	46056634	downstream_gene_variant
C/G	46056636	downstream_gene_variant
A/C	46056637	downstream_gene_variant
A/G	46056644	downstream_gene_variant
G/A	46056645	downstream_gene_variant
A/C	46056657	downstream_gene_variant
G/A	46056665	downstream_gene_variant
G/A	46056669	downstream_gene_variant
A/G	46056672	downstream_gene_variant
T/G	46056681	downstream_gene_variant
G/C	46056688	downstream_gene_variant
A/C,T	46056690	downstream_gene_variant
G/T	46056694	downstream_gene_variant
T/A,G	46056702	downstream_gene_variant
A/T	46056704	downstream_gene_variant
G/T	46056719	downstream_gene_variant
G/A	46056725	downstream_gene_variant
A/G	46056730	downstream_gene_variant
C/G	46056733	downstream_gene_variant
A/G	46056734	downstream_gene_variant
A/G	46056736	downstream_gene_variant
A/G	46056737	downstream_gene_variant
A/G	46056752	downstream_gene_variant
A/T	46056760	downstream_gene_variant
T/A	46056770	downstream_gene_variant
T/C,G	46056778	downstream_gene_variant
A/G	46056783	downstream_gene_variant
A/G	46056787	downstream_gene_variant
T/A	46056790	downstream_gene_variant
G/A	46056796	downstream_gene_variant
T/A	46056798	downstream_gene_variant
T/A	46056805	downstream_gene_variant
G/C,*	46056807	downstream_gene_variant
T/C	46056862	downstream_gene_variant
C/T	46056868	downstream_gene_variant
C/G	46056876	downstream_gene_variant
T/C	46056877	downstream_gene_variant
G/C	46056880	downstream_gene_variant
G/A	46056897	downstream_gene_variant
G/T	46056914	downstream_gene_variant
A/C	46056935	downstream_gene_variant
G/T	46056943	downstream_gene_variant
A/T	46056951	downstream_gene_variant
T/C	46056978	downstream_gene_variant
T/C	46056989	downstream_gene_variant
A/T	46057014	downstream_gene_variant
T/A	46057042	downstream_gene_variant
A/G	46057050	downstream_gene_variant
A/G	46057051	downstream_gene_variant
C/T	46057059	downstream_gene_variant
A/T	46057061	downstream_gene_variant
C/T	46057063	downstream_gene_variant
T/G	46057072	downstream_gene_variant
G/C	46057077	downstream_gene_variant
C/T	46057080	downstream_gene_variant
G/T,A	46057083	downstream_gene_variant
G/T	46057086	downstream_gene_variant
G/T	46057109	downstream_gene_variant
C/T	46057119	downstream_gene_variant
T/A	46057122	downstream_gene_variant
G/A	46057123	downstream_gene_variant
A/G	46057132	downstream_gene_variant
A/G	46057135	downstream_gene_variant
A/T	46057140	downstream_gene_variant
C/T	46057147	downstream_gene_variant
C/A	46057169	downstream_gene_variant
C/A	46057180	downstream_gene_variant
A/T	46057183	downstream_gene_variant
A/G	46057197	downstream_gene_variant
A/C,G	46057198	downstream_gene_variant
G/T	46057201	downstream_gene_variant
G/A	46057206	downstream_gene_variant
A/T	46057215	downstream_gene_variant
C/T	46057234	downstream_gene_variant
T/A,C	46057251	downstream_gene_variant
C/G	46057264	downstream_gene_variant
A/T	46057275	downstream_gene_variant
C/T	46057277	downstream_gene_variant
T/C	46057298	downstream_gene_variant
G/T	46057308	downstream_gene_variant
A/*,T	46057324	downstream_gene_variant
C/T	46057371	downstream_gene_variant
G/T	46057380	downstream_gene_variant
T/G	46057392	downstream_gene_variant
G/A	46057398	downstream_gene_variant
G/T	46057401	downstream_gene_variant
T/C	46057404	downstream_gene_variant
G/A	46057409	downstream_gene_variant
T/A	46057425	downstream_gene_variant
C/A	46057453	downstream_gene_variant
G/T	46057454	downstream_gene_variant
G/A	46057458	downstream_gene_variant
T/G	46057465	downstream_gene_variant
A/C	46057485	downstream_gene_variant
T/G	46057489	downstream_gene_variant
C/*,T	46057502	downstream_gene_variant
G/A,*	46057505	downstream_gene_variant
C/T	46057537	downstream_gene_variant
T/A	46057543	downstream_gene_variant
G/A	46057555	downstream_gene_variant
A/T	46057562	downstream_gene_variant
C/T	46057569	downstream_gene_variant
C/T	46057611	downstream_gene_variant
C/A	46057612	downstream_gene_variant
T/A	46057626	downstream_gene_variant
C/A	46057635	downstream_gene_variant
T/C	46057646	downstream_gene_variant
A/C,G	46057658	downstream_gene_variant
T/C	46057671	downstream_gene_variant
A/G	46057687	downstream_gene_variant
T/C	46057688	downstream_gene_variant
G/A	46057694	downstream_gene_variant
C/A	46057703	downstream_gene_variant
C/T	46057705	downstream_gene_variant
A/G	46057707	downstream_gene_variant
T/C	46057717	downstream_gene_variant
G/A	46057773	missense_variant	p.Ser234Asn
A/T	46057788	missense_variant	p.Tyr239Phe
C/T	46057804	synonymous_variant	p.Asp244Asp

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_33578.1

MLNKCQQLEDIPPLGELQSLLRLEISDCSIRAPPEGLENLVNLKWLDLSNNVNLELVAGSFLSSLTNIQYLNLLHCSGGIEVEDVKEMTMLECFKGTFANENNLNRYVREILNSAHGPQTYLIHHLYWKDNGRKRPPSNWDSHLPTVDYGTMSFERPPRKWESHLSPFECRTVSFKDCKKMPHFLPGNLIKLLLECNDHWKPSNFEAFLFAKFNYHLQGVASKNLSFNVFGLESVEFHYLLPRDIEALFVTHNANAYELQRHAIQ*

CDS Sequence:
>Vu_33578.1

Promoter Sequence:
>Vu_33578::LG9:46053776-46055776(+)

TTAAAATATATATATTATTTTGATAAAGTGATATATATTTCAACAATTATTTTGATGTAATATTATAAATCGAAGAATTTCTTTTAAAAACTCCTTTATTTAAATAGATTTCACTTCTAATATATTATTTTCTTAATTAATACTAACTAAAAGGAAAAGTCAACAAAGTATTGTTTAATAAGATTTTGTAATATGTATTCTTTCTCCTTTGTTTGAATATATCAACACTCTTAAATGAATTAAGATTCACCAAAACAATTAAACAGGTAACGAAGAGGAATATGGTAATGGTGTTTTAACTACTTTGCAAAGTAAATTAGATGAGTTGAGGTCCGATCTAATATGTGAAGAAGAGGACATTCAGGGACAATTACAATTGCTGGAGTCACGTGGCAAGAAGCGCAAAAAAGAAGTTGATCATTGGTTGGAAAAAATACAAAATATGAAACAAAGAGCTATTCACATGAAAGACTCACTGAATCCGTTTGGGTGCTCTAACTTGTATATACCACAAGGAGAAATGTATTCGGTTGAAGAATCACAAAAGAAAATACAACATTTGACTGAAGAAATTCAAGAGCATAAGAAATTGAAGCCTCTGGTGTTGTCTAATGAATATTTTGGTTGGAAATTTGAGAAAAATGTTGAGAAGTTGTGGAAGCTTACGAGAGATGATCGAGTTTTCATCATTGGCATATGTGGAATGGGTGGAGTGGGAAAAACTTTCCTAACCGCTTACATGCATAATGAGATAAAAAGAAACAAAATTTTCGAGGATGTCTTATGGGTTACTGTTTCCCATGATTTTACCATTGTCAAATTGCAACAGCGTATTGCAGAAATAATAAAGGTAAGGCTTTGCAGTGACGATGAAACGAAAAGATCAATGATTCTGGCGTCAGAGTTGGAAAAAAGAAAAAACATATTATTTATTTTAGATGATGTTTGGAAGTATATTGATCTAGAAAAGGTAGGAATTCCTCGAGTAAATGGTATTAAATTGATCATCACAAGTCGGTTGAGACATGTCTGTCAACAAATGGATTGTCTCTCAGTTAATATAATAGAAGTGAGTCCTTTGTATCATGGTGATTATAGTGATGGTGATTATAGTGATGATGCTTATAGTGATGATGATTATCTTGATGATGATGAAATTGATTCAGATTGGAAGTTATTTTTGCTGAAACTTGGACACTATGAGACACCTTTAACACTTTCCCCTCAAGTGCGGAATATTGCAAAATCTGTTGTAGAGAAGTGTGATGGTCTACCACTTGGAATCAGTGTGATGGCTAGAACCATGAAAGGGATAACTAGCATCCATTGGTGGAGACATGTGCTAAATAAACTTGACAATTTGGAAATGGGAGTAATGCAGGAAGAAGTTTTAACTGTATTAAAACGTAGTTATGATAATTTAAGTGAAAAGGATGTGCAAAAATGTTTTTTGTACATTGCATTGCTACCTAATTTCATGTTTAAACATGCTGTGATAAGGAAGCTTTATGATATAGGACTATTAAATGGAAATAAGAGTTTGGAGGAAATATTTGATGAAGGAAATGTTATGGTGGATAAGCTCTTAAACCATTCTTTATTGATGGAGAATGATTTGGACCTATCAATGCATGATTTAGTGAGAAAAATGGCGTTGAATATATTGAAGGAGAGTGGCAGTAACATGATAAAATGTAATGGAAATATGAAAAAAATACCTGATACATGGGAGTGGACAATTGATTTGGAAGTAGTTTCTCTTGCTAAAAACATGATTTGTCAAATTCCAAGCACATTTCCAATTTGTCAAATTCCAGAGGACACATCTCCAATTTGTCCAGGCCTGTCAACCTTGTTTTTATTTGAAAATTGCATTACACATATTCCAGAGTGTTTTTTCACTCACATGAATGCTCTAACCACGCTTGATCTATCAGAAAATTTTTTCTTAAGATGTTTGCCTCATTCGCTATCTAATTTGAGGTCTCTCACTTCTTTAA

Gene Sequence:

>Vu_33578(+)

ATGCTCAATAAATGTCAACAATTGGAAGATATACCTCCATTAGGAGAGCTACAATCATTGTTAAGATTAGAGATTTCAGATTGTTCCATCAGAGCACCACCGGAAGGTTTAGAAAATCTAGTAAACTTGAAATGGCTAGATCTCTCCAATAATGTTAATTTGGAATTGGTAGCAGGAAGTTTTCTCTCTAGTTTGACCAATATTCAATACCTGAATCTCTTGCATTGTTCAGGAGGTATAGAAGTAGAAGATGTAAAGGAGATGACTATGCTTGAATGTTTTAAAGGAACATTTGCCAATGAGAATAATCTTAACCGTTATGTGCGAGAAATCTTGAATAGTGCTCATGGACCTCAAACTTATTTAATCCATCATCTGTATTGGAAGGATAATGGGCGTAAGAGGCCTCCTTCGAATTGGGACTCTCATCTTCCCACAGTTGACTATGGAACTATGTCCTTTGAGAGGCCTCCTCGGAAGTGGGAATCTCATCTTTCCCCATTTGAGTGTCGAACTGTGTCCTTTAAGGATTGCAAAAAAATGCCACATTTCCTTCCGGGAAACCTTATAAAATTATTACTGGAGTGCAATGATCATTGGGTATACTTATGTGATATTCTATTATCAAATGATATTTCTCATTTGGAGGAAATTTGCATTCATGATTGGACAAAACTAACGAGTTTGTTTTGTTCATCTTCATCTTGTTGCTTGTGCACCAATATCAGAAACCTTCGAACTTTGAAGCTTTCTTGTTTGCAAAGTTTAACTACCATTTGCAAGGAGTTGCCTCCAAGGTACATATTCTCTCAACTCAAAACCCTGTATGTCTACCAATGCCACAAAATAAAAATTTTACTCACATCAAAGTTAGTGCGACAACTTCAAAGTCTGGAATCTGTAACTGTATCAGAATGCGATTCAATTGAACAAATATTTGCACGGGATGGTGATAATCATAAAGATGAAGGTGAAGATGACAACAGTAACAAAATTAGACTTTGTAAATTGACCTATTTGGATTTAAATTTGTTTACCAGAACTAAAGATTAGTGTGCGAGGGAATTTTAATTTGTAAATCTAGATTTACACCATCCATTCTTTGTTGTCCCAAATTATGTGAACCCATAATAGAATAGATGGCTTCATTATTGTCCCAAATTATATGAACCCAGAACATACATTGTTTTATGCATTTTTTTTATTTAATACTTTATGCTTTCATTTAATAAATGAAGAGATAAGCTTTTTTCCAAATCATTCCTCTTTTCAGAAATTCCATTCAAACAGAAAAATTACAAGTGCAAGATGTTTTCCTTTTCTTCTGTTATGTGTGGTGAGATCGTTGTCATCAAGATTATATCAAAGAAACATCTCCAAAAAGTTAGGAAACCAAACCAGACACCAAGCTCCAGAAATTCAATTGATATGAAATGCAGATTTAGATTATTTATACACCAAAAAAAGAGAGACTGTTTCTTATTAAAACCTGAAACTATAGCAGCAAAACATCAATAAAAAGTGAAAGATGAGATTTTAATACCACTAAGGGCATTGCTGAATAAAAGGAAATATCCAGATGAAAGAAAAGCACACTAAAAAAGGTGTCTCCTTATTGTTTTGGAGGCTAAGAGTAAGAAAAGGAAAGGTGTGAACGCAGGTAGATAGCATGCAAGACGGAAGAGAGTTTTTATGAGCATGACACACATAGGTTAAGGGTTGTATCCTTGCTCTTTAGATGGGGAAAAAGACATCAATATTCCTCTATTCTGTTTTGTGGTTGTGCAAGTGTTCATTAAACTGGTGTATCATGTTTAACAAGAGGAGGTAAATTTCCAATTAAAAAGTCATTCAAAGTTCGCTCACGTAGTTTTTGCTCACTATTCACTTTTGATTATGCATAGTCAAACGATATTTAGATTAGTTTCACAATATATCTAATAGTATATGGATCCTATTTATTTAGAATTTAAGCTTCAACGTGTTTGGTTTGGAGAGTGTGGAATTCCACTATTTGCTTCCAAGAGACATTGAGGCATTGTTTGTAACTCACAATGCGAATGCTTATGAGCTACAACGTCATGCAATACAATAG