Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_33563 LG9 45217448 45220724 PREDICTED: putative disease resistance protein RGA4
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C 45217453 synonymous_variant p.Ala2Ala
T/C 45217458 missense_variant p.Val4Ala
G/A 45217496 missense_variant p.Gly17Ser
C/A 45217640 missense_variant p.Leu65Ile
A/T 45217938 missense_variant p.His164Leu
G/A 45217980 missense_variant p.Ser178Asn
T/C 45218042 synonymous_variant p.Leu199Leu
A/T 45218044 missense_variant p.Leu199Phe
T/C 45218056 synonymous_variant p.Val203Val
C/A 45218066 missense_variant p.His207Asn
C/T 45218090 intron_variant
G/A 45218115 intron_variant
A/G 45218175 intron_variant
C/T 45218180 intron_variant
A/C 45218206 missense_variant p.Glu210Ala
A/G 45218218 missense_variant p.His214Arg
A/C 45218266 missense_variant p.Gln230Pro
G/A 45218270 synonymous_variant p.Glu231Glu
A/T 45218287 missense_variant p.Lys237Met
A/G 45218315 synonymous_variant p.Ala246Ala
G/A 45218333 synonymous_variant p.Leu252Leu
C/T 45218339 synonymous_variant p.Thr254Thr
C/A 45218343 synonymous_variant p.Arg256Arg
C/G 45218363 synonymous_variant p.Ser262Ser
G/A 45218389 missense_variant p.Arg271His
C/T 45218403 missense_variant p.Pro276Ser
C/T 45218411 synonymous_variant p.Asp278Asp
A/T 45218414 missense_variant p.Glu279Asp
T/C 45218795 intron_variant
A/C 45218823 intron_variant
T/A 45218972 intron_variant
C/T 45218986 intron_variant
A/T 45218988 intron_variant
T/A 45218991 intron_variant
T/A 45218992 intron_variant
A/T 45218996 intron_variant
C/T 45219001 intron_variant
G/A 45219003 intron_variant
T/C 45219007 intron_variant
T/G 45219012 intron_variant
G/A 45219018 intron_variant
C/T 45219027 intron_variant
T/A 45219068 splice_region_variant&intron_variant
C/T 45219072 splice_region_variant&intron_variant
A/G 45219075 missense_variant&splice_region_variant p.Thr330Ala
C/G 45219076 missense_variant&splice_region_variant p.Thr330Ser
T/G 45219082 missense_variant p.Val332Gly
G/A 45219090 missense_variant p.Asp335Asn
T/C 45219098 synonymous_variant p.Ala337Ala
C/T 45219132 missense_variant p.Arg349Cys
C/T 45219145 missense_variant p.Ser353Phe
G/T 45219148 missense_variant p.Trp354Leu
C/T 45219201 intron_variant
T/C 45219204 intron_variant
A/G 45219222 intron_variant
A/T 45219227 intron_variant
G/A 45219239 intron_variant
A/G 45219245 intron_variant
A/C 45219264 intron_variant
G/A 45219267 intron_variant
C/G 45219271 intron_variant
G/T 45219280 splice_acceptor_variant&intron_variant
G/T 45219708 synonymous_variant p.Val507Val
G/A 45219732 missense_variant p.Met515Ile
C/A 45219738 missense_variant p.Asp517Glu
C/T 45219787 missense_variant p.His534Tyr
A/G 45219804 stop_retained_variant p.Ter539Ter
T/G 45219812 missense_variant p.Val542Gly
G/A 45219818 stop_retained_variant p.Ter544Ter
T/C 45219859 missense_variant p.Trp558Arg
A/G 45219866 missense_variant p.Lys560Arg
G/T 45219887 missense_variant p.Arg567Met
G/C 45219895 missense_variant p.Glu570Gln
G/T 45219899 missense_variant p.Trp571Leu
G/T 45219900 missense_variant p.Trp571Cys
T/A 45219915 synonymous_variant p.Ile576Ile
C/G 45219966 synonymous_variant p.Pro593Pro
A/G 45220317 synonymous_variant p.Arg710Arg
T/G,C 45220434 intron_variant
C/G 45220439 intron_variant
C/T 45220445 intron_variant
G/C 45220449 splice_region_variant&intron_variant
G/C 45220453 splice_acceptor_variant&intron_variant
A/G 45220459 missense_variant p.Ile736Val
T/A 45220464 stop_gained p.Tyr737*
C/T 45220465 missense_variant p.His738Tyr
G/T 45220468 missense_variant p.Val739Phe
A/C 45220474 missense_variant p.Asn741His
A/G 45220475 missense_variant p.Asn741Ser
A/G 45220487 missense_variant p.Tyr745Cys
C/G 45220497 synonymous_variant p.Gly748Gly
T/A 45220512 synonymous_variant p.Leu753Leu
C/G 45220518 missense_variant p.Phe755Leu
A/G 45220521 synonymous_variant p.Lys756Lys
A/C,* 45220527 stop_lost p.Ter758Tyrext*?
G/T,C 45220533 missense_variant p.Leu760Phe
T/G 45220534 missense_variant p.Cys761Gly
T/G 45220536 missense_variant p.Cys761Trp
A/G 45220542 synonymous_variant p.Val763Val
C/G,A 45220543 missense_variant p.Arg764Gly
G/C 45220557 missense_variant p.Gln768His
C/A 45220569 synonymous_variant p.Ala772Ala
A/G 45220576 missense_variant p.Thr775Ala
C/T 45220593 synonymous_variant p.Leu780Leu
A/G 45220594 missense_variant p.Ile781Val
A/G 45220598 stop_retained_variant p.Ter782Ter
G/T 45220631 missense_variant p.Gly793Val
G/C 45220686 missense_variant p.Trp811Cys
A/T 45220705 stop_gained p.Lys818*
C/T,* 45220717 missense_variant p.Arg822Cys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_33563.1
MAEVLLGIVIQNLQSFGQDQLATFWGVHQHTQMLSSNLSAIRAVLRDAERKQITSYAVKDWLQKLTDAAYVLDDILDECSMHFTKMHSDDGHTSCLSRLHPNDILFRFNIANRMKDITQRFHDIHEEKSRFNLEHGVTEVQTVDDDWRQTSSDITEPVVYGRDHDREQIVKFLLEDASNSEEISIFLIVGMGGLGKTTLAKQVFNDHRVEEVLHGMRYLLVLDDVWNEDQEKWKQLKGKLQCARAAKGATILVTTRLEEVASTMQTHPAYRLKELPGDESWSLFKYHAFGPNREEKEELVAIGKEIVRNCIGLPLAIKTLGSLLRDQSETFVFGDVAPVPSNHSLRALRTQSSWFSPLKDLTHLRGLPKNLTQLQDLRHIVMDYCNSVVETLPKISRLRHLRTLSIFVVGSKPGCGLAELHGLNLGGRLRIRGLENVPNEWDAKQANLIGKKDLHILQLSWDGNANPKGSNVSVERVLEALEPPSTLKSFEMNGYQGRQLWSWMRNSAVLRDLVDVRLSNSDNCEELSPLGKLPHLKRLKVSGMKNVKCIDGETYDGVEEKAFPSLKELRVDNLPNLERLLRDEGVEMVPRLSQLRIDGVLNFKVPRLPCVETVHARGIEAVTSFMEGVGENMACLKTLSIKFIKGVVVLPDEFRRLGALQELYITEWYDVEYFPEHVLEGLTSLRTLSIQYCEKLKSLSEGVRHLACLENLTIGNCPELVALPSNMSQLTALRLDISCCKCTSLPDWLGDMTSLQKLSIVYCTELRSVPSSLQHLTNLSHLRIDGCPHLKKRCKRETGEDWQYIKHIPQLELYFRRETTFSS*


CDS Sequence:
>Vu_33563.1
ATGGCTGAGGTTTTGCTCGGAATTGTAATTCAAAACTTGCAATCTTTTGGCCAAGACCAACTTGCAACGTTTTGGGGTGTTCACCAACATACTCAAATGCTTTCCAGCAATCTCTCTGCAATCCGTGCTGTTCTCAGAGATGCTGAGAGAAAACAAATAACAAGTTATGCTGTGAAAGATTGGCTGCAGAAACTCACGGATGCGGCATATGTGCTGGATGATATCTTGGATGAATGTTCAATGCACTTCACAAAGATGCACTCTGATGATGGACATACTTCATGCCTATCCCGTCTCCATCCTAATGACATTCTCTTTCGTTTCAATATTGCCAATAGGATGAAAGACATCACCCAAAGATTTCATGACATTCATGAAGAAAAGAGCAGGTTTAATTTAGAACATGGTGTCACAGAGGTGCAAACAGTGGATGATGATTGGCGCCAAACTAGCTCTGACATTACAGAACCTGTAGTTTATGGCAGAGACCACGATCGAGAGCAAATTGTGAAGTTTCTTCTGGAAGACGCTAGTAACAGTGAAGAGATCTCTATCTTTCTCATAGTTGGTATGGGTGGACTTGGAAAAACAACATTAGCCAAGCAGGTTTTCAATGATCACAGGGTTGAAGAAGTGTTGCATGGGATGAGGTATTTACTTGTTCTTGATGATGTGTGGAATGAAGACCAAGAGAAATGGAAGCAGTTGAAGGGAAAGTTGCAGTGCGCAAGGGCAGCAAAAGGAGCTACCATTTTGGTCACCACTCGACTCGAGGAAGTTGCTTCCACCATGCAGACGCATCCTGCTTACCGTTTGAAAGAATTGCCAGGAGACGAAAGTTGGTCGTTGTTCAAATACCATGCGTTTGGACCAAACCGAGAAGAAAAGGAAGAGCTCGTGGCAATTGGCAAAGAGATCGTGAGAAACTGCATTGGTTTGCCGCTTGCCATAAAAACACTGGGAAGCCTCTTGCGTGATCAAAGTGAGACTTTTGTTTTTGGTGATGTTGCTCCGGTGCCATCAAACCATTCTCTCCGAGCATTACGCACACAATCTTCTTGGTTCTCCCCACTCAAGGATTTAACACATTTGAGGGGACTTCCCAAAAACTTGACACAATTACAAGATCTAAGACATATTGTGATGGATTATTGTAATTCAGTAGTAGAGACGCTTCCCAAAATTAGCAGGTTAAGGCATCTAAGAACACTAAGCATTTTCGTGGTGGGTTCAAAGCCAGGGTGTGGCTTAGCAGAGTTGCATGGCTTAAATCTGGGAGGCAGGCTAAGAATCAGAGGCCTTGAGAACGTCCCCAATGAATGGGATGCTAAACAAGCAAACTTGATTGGTAAGAAGGACTTGCATATCCTGCAGTTGTCATGGGATGGTAATGCTAATCCAAAAGGTAGTAATGTAAGTGTGGAGAGAGTACTGGAAGCCCTAGAACCTCCCTCAACTCTCAAGAGTTTTGAAATGAATGGATATCAGGGAAGGCAGTTATGGAGTTGGATGAGAAATAGTGCAGTTTTGAGAGACTTGGTGGATGTTAGACTCTCAAACAGTGACAACTGTGAGGAGCTTTCCCCACTTGGTAAACTACCACACTTGAAAAGGCTAAAGGTGAGTGGAATGAAAAATGTGAAGTGCATAGATGGTGAGACGTATGACGGCGTGGAGGAAAAGGCATTTCCATCGTTGAAGGAACTGAGAGTGGATAATTTACCAAATTTGGAGAGGTTGTTGAGGGATGAAGGAGTAGAGATGGTCCCTCGTCTTTCCCAATTAAGAATTGATGGTGTGTTGAACTTTAAAGTCCCACGTCTTCCTTGTGTTGAGACAGTTCATGCTAGAGGAATTGAGGCAGTGACTTCTTTCATGGAAGGGGTTGGGGAGAATATGGCTTGTCTAAAGACCTTAAGCATTAAATTCATTAAAGGAGTGGTGGTATTACCCGACGAATTCAGGAGGTTGGGTGCACTACAGGAACTATACATTACAGAATGGTATGATGTGGAGTATTTTCCAGAACACGTGCTGGAAGGTCTAACTTCTCTTCGAACTTTGTCCATTCAATACTGTGAGAAATTGAAATCGTTGTCTGAAGGTGTGCGACATTTGGCTTGTCTTGAGAATTTGACAATCGGTAATTGTCCAGAGCTGGTGGCTCTACCAAGCAATATGAGCCAACTAACTGCCCTGCGTTTGGATATATCATGTTGCAAATGTACTTCATTACCGGACTGGCTGGGAGACATGACTTCTCTTCAAAAATTAAGTATTGTGTATTGTACGGAGTTGAGGTCAGTGCCGAGTAGCCTTCAACACCTCACCAACTTGTCTCATTTAAGGATAGACGGATGTCCTCATCTGAAAAAGCGGTGCAAGAGGGAAACAGGAGAGGATTGGCAATACATAAAGCATATTCCGCAATTGGAACTATATTTCAGGAGGGAAACGACGTTTTCGTCGTGA


Promoter Sequence:
>Vu_33563::LG9:45215448-45217448(+)
ACAATTTAAGTAATTTAAAATTAAATGATATTATTATTTTATTAACTTAATTTTTCTAATACTTCAATATATTCATAAAATTTGAAATTAATTATTATTGTTTGGCCCTTCAGGCATGTCAATCACTCCTTTAAATCTGTCACCACCTTTCCTCTCTGTTCTCAATTATTTTGCACAAAAGCATCTAAGAACACTGGGCATTTTCGTTGCGGGTTCAAAACCAGGGTGTGGGTTAGGAGAGTTGCATAGCTTAAAGTTGGGAGGCACACTAAGAATCAAAGGCTTTGAAATATAAGTGAAATCTGTATTCTATTAAGTTATCTAGCTTAGGTATTTTGAGACTTAGTAGAAGAATTAGTGCGTGATAGTAATGGTTTCAATCCGATTTATGGTCCAAAACTCCAAATCTTTTAGTAATCTCTCCAAACTCAAACTGTTCTTCGATCATGCCCACAGGTAATGACTCATTGCGTAATCAACTATATGATCAAATAAATTCCTACTTTAGTACAATTATAGAAAAAATTATAGTTCTCTTCTTTAGTACAGCTCATAATAGAGACACCAAATTAAGCCACATAATTAAGGGATTTCAACATGTTCTCCTAGGATCAACACATGTTGGAATAATATCAAGGTTCTAATAAAATAATAAATAACCCCTTGACCAGTAGGTACTAAAACACCAGTACATATAGATTTTATGCTAAGGAATAAAGATGTAAAAGCATAGCAATTCAAAATCTCGCAACAAAAAATTCCCGGCATCAACTATGATTCATACTGAAATGGTGAGACAGGGGAGCAATAAGTTTATAAAAAATTAATGTGGATGAGAATATAAACAAAAGATTGAAATGAAGACCCACTTGAAACAAAGACCAAGACAACAAGGCCACCAGTTTTTTCAATTGCAACTTTGATTTCTGCTACTTCAACCTATAGATTCAAATTTCAAAACAATAATGTTTATCAAACAGAAGAAGATTAAAATGAGCACACTTCACAATCCCTCGCTTTTTTTCAAGAAAATCCAACTTTCACAGCTACGTCTCCCGTTATGTGGTTACATCAAAAGCACTCCTTCTGTGGATTCTAGTTCTGTAAGCAAGTTTGAAAATATGTTAGGTAGTGTATTTACTTTATAACAACTCATTCCAGTGCAGCATATCGTGAATAGATCATAAACTGTTACTTGTGCTGAAATTTTCTTGGTTCTGATTTTGTTTTATAGAATTCTCTTGATGTATGATTTGAGGAGTACCACAGATTATACAAGCAAGGTTTCAAATTGGATTGCAACTACGGGAACCATGGGCAATATGGCAAAGATTGTTGTTACTTCCACATACTGATTTCGTGGAGTTAGACAAAAACTCCATTTTTTGGGCCATGTGAACAACATTGGTGGTGTGACAAATTAAGGGTATGTTTGGTTCAACATTTATTTAATAAAGTTTATCATATTATTTATTTATTACAGAAAAGTTTCAGACAGGGATATGTTAGTTGAAGATATTTTAAATTGGTTGTATCCCTGTACATGAATACTCTAATTTATTAATTTGAAAAATCAAATTTCCCTAATTTTAATATCTTTATGGTGTCGACTACAAGTTTCACTAATTCTGTATTTTTGTTTTATAAAATATTGCCGAAATAAGTGATAAACACGATGTGGAAAAAACTGAAATTTGAGCGCAAATGAAGGAGAAAGTGAGTGGACATGTTTGTGGAATGCAGTGACAGGAAGAGAGCGAAGTTGGTAAGCAATGATAAGGTTGGTTTGACTTCACTCCTTCTATGAACACTCCTTGTCAACAAAAGCATACGGGGGACCACTCCTTGTAAGAAAACAACACTCTATATTTATTGCCAACTCAAATAAATGACGCGTAGTTGATGAAGATTGATAATTTTCTACGATCACCACAAAATACTCTTCCCCATACTTCCTTCTCCACAGTCATAATCATCCCAAAAACCCTCCTTTCTGTAAA


Gene Sequence:
>Vu_33563(+)
ATGGCTGAGGTTTTGCTCGGAATTGTAATTCAAAACTTGCAATCTTTTGGCCAAGACCAACTTGCAACGTTTTGGGGTGTTCACCAACATACTCAAATGCTTTCCAGCAATCTCTCTGCAATCCGTGCTGTTCTCAGAGATGCTGAGAGAAAACAAATAACAAGTTATGCTGTGAAAGATTGGCTGCAGAAACTCACGGATGCGGCATATGTGCTGGATGATATCTTGGATGAATGTTCAATGCACTTCACAAAGATGCACTCTGATGATGGACATACTTCATGCCTATCCCGTCTCCATCCTAATGACATTCTCTTTCGTTTCAATATTGCCAATAGGATGAAAGACATCACCCAAAGATTTCATGACATTCATGAAGAAAAGAGCAGGTTTAATTTAGAACATGGTGTCACAGAGGTGCAAACAGTGGATGATGATTGGCGCCAAACTAGCTCTGACATTACAGAACCTGTAGTTTATGGCAGAGACCACGATCGAGAGCAAATTGTGAAGTTTCTTCTGGAAGACGCTAGTAACAGTGAAGAGATCTCTATCTTTCTCATAGTTGGTATGGGTGGACTTGGAAAAACAACATTAGCCAAGCAGGTTTTCAATGATCACAGGGTATGCAAACATTTTGACCTGACAATTTGGGTTTGTGTTTCTGGTGATTTCAACACCAAGACAATCCATCATAGAATGCATCACCGGACAAAATCCCAATCTCAATAGCTTAGAAGCAATGCGGAAAAAGGTTGAAGAAGTGTTGCATGGGATGAGGTATTTACTTGTTCTTGATGATGTGTGGAATGAAGACCAAGAGAAATGGAAGCAGTTGAAGGGAAAGTTGCAGTGCGCAAGGGCAGCAAAAGGAGCTACCATTTTGGTCACCACTCGACTCGAGGAAGTTGCTTCCACCATGCAGACGCATCCTGCTTACCGTTTGAAAGAATTGCCAGGAGACGAAAGTTGGTCGTTGTTCAAATACCATGCGTTTGGACCAAACCGAGAAGAAAAGGAAGAGCTCGTGGCAATTGGCAAAGAGATCGTGAGAAACTGCATTGGTTTGCCGCTTGCCATAAAAACACTGGGAAGCCTCTTGCGTGATCAAAGTGAGGTAAGACAATGGATATATGTAAAGGAAAGTAGTTCTAAGACAAATGAGGAAAATTCTATTATGCGTGCTTTGAAACTTAGCTATTCTAATTTGGAGTTGTCATTGCGGAGATGCTTTTCTTTTTGTGCAATTTTCCCCAAAGATTTTGAAATAGACAAGGAAGAATTGATTCATCTCTGGATGGCTAATGGGTTTATTGAAAGTGAAAGAAACATAGAAGTGGAGGATGTTGGAAATAAAGTGTGGAATAAATTATACAGTAGATCATTTTTTCAGGAAGCAAAGTGTGATGAGTTTGGTATGGTCAAAAGTTTCAAGATGCATGATCTATTTCATGATCTTGCCCAGTCTATTATGGGTGAAGAATGTGCGGCTTTTGTGGAAGGAAGGTTGACTCCGTTGTCAAGTAGAGTTCACTATTCAACCTTGTTATCTTCTGATGTTTCTTTTCGAGGATTCAAGCATGCTTTCAAGAAAGTTGAATCCCTGCGGACTTTTCTTGATTTGCAGACTTTTGTTTTTGGTGATGTTGCTCCGGTGCCATCAAACCATTCTCTCCGAGCATTACGCACACAATCTTCTTGGTTCTCCCCACTCAAGGATTTAACACATTTGAGGTATTTGTGTTTGACTTGTCATTCTAAAGCAAGCTTAAATAACTTAATTTGTCAAATGCCGAAATTGCAAATTTTGAAATTGAAAGATTCCATTCTTAGGGGACTTCCCAAAAACTTGACACAATTACAAGATCTAAGACATATTGTGATGGATTATTGTAATTCAGTAGTAGAGACGCTTCCCAAAATTAGCAGGTTAAGGCATCTAAGAACACTAAGCATTTTCGTGGTGGGTTCAAAGCCAGGGTGTGGCTTAGCAGAGTTGCATGGCTTAAATCTGGGAGGCAGGCTAAGAATCAGAGGCCTTGAGAACGTCCCCAATGAATGGGATGCTAAACAAGCAAACTTGATTGGTAAGAAGGACTTGCATATCCTGCAGTTGTCATGGGATGGTAATGCTAATCCAAAAGGTAGTAATGTAAGTGTGGAGAGAGTACTGGAAGCCCTAGAACCTCCCTCAACTCTCAAGAGTTTTGAAATGAATGGATATCAGGGAAGGCAGTTATGGAGTTGGATGAGAAATAGTGCAGTTTTGAGAGACTTGGTGGATGTTAGACTCTCAAACAGTGACAACTGTGAGGAGCTTTCCCCACTTGGTAAACTACCACACTTGAAAAGGCTAAAGGTGAGTGGAATGAAAAATGTGAAGTGCATAGATGGTGAGACGTATGACGGCGTGGAGGAAAAGGCATTTCCATCGTTGAAGGAACTGAGAGTGGATAATTTACCAAATTTGGAGAGGTTGTTGAGGGATGAAGGAGTAGAGATGGTCCCTCGTCTTTCCCAATTAAGAATTGATGGTGTGTTGAACTTTAAAGTCCCACGTCTTCCTTGTGTTGAGACAGTTCATGCTAGAGGAATTGAGGCAGTGACTTCTTTCATGGAAGGGGTTGGGGAGAATATGGCTTGTCTAAAGACCTTAAGCATTAAATTCATTAAAGGAGTGGTGGTATTACCCGACGAATTCAGGAGGTTGGGTGCACTACAGGAACTATACATTACAGAATGGTATGATGTGGAGTATTTTCCAGAACACGTGCTGGAAGGTCTAACTTCTCTTCGAACTTTGTCCATTCAATACTGTGAGAAATTGAAATCGTTGTCTGAAGGTGTGCGACATTTGGCTTGTCTTGAGAATTTGACAATCGGTAATTGTCCAGAGCTGGTGGCTCTACCAAGCAATATGAGCCAACTAACTGCCCTGCGGTAGGTTTCAATCAGTTATTGCAGCACATTACCAGATGGCTTACAATGTGTCCCTTCCCTAGGAAGTTTGGATATATCATGTTGCAAATGTACTTCATTACCGGACTGGCTGGGAGACATGACTTCTCTTCAAAAATTAAGTATTGTGTATTGTACGGAGTTGAGGTCAGTGCCGAGTAGCCTTCAACACCTCACCAACTTGTCTCATTTAAGGATAGACGGATGTCCTCATCTGAAAAAGCGGTGCAAGAGGGAAACAGGAGAGGATTGGCAATACATAAAGCATATTCCGCAATTGGAACTATATTTCAGGAGGGAAACGACGTTTTCGTCGTGA