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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_33117 LG9 33033506 33035001 hypothetical protein
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/C 33033516 missense_variant p.Ser326Cys
C/T 33033652 intron_variant
G/T 33033661 intron_variant
G/A 33033681 intron_variant
T/C 33033738 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_33117.1
MMEDPNLLRQWHLSSIDDPNLLPIAAAFGETFQQHAFTYPDFNPKASMETTLMDIERPTKHHKNIGWNPIKSSAQTSDAQYVSFPNLLSFMDSNHISPLGLVKANEEACPITNSTTSLDTFSQGILGNHNYLFKACQETKKNGRRSKISHPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASILGDAISHLKQLQEKVKALEEAQNMKKTVESVVIVKKSQLSYDVNNSSEYDGPLFEETIPEIEARFCGRNVLIRVHCEKTKGVVEKTIHEIENLHLKVTNSNAMAFGRCAIDMTIIAQMDMEFCMGVKDVVRNLRSAFTSSM*


CDS Sequence:
>Vu_33117.1
ATGATGGAGGACCCTAATTTGCTCCGTCAGTGGCACCTGAGTTCTATTGATGACCCTAACTTACTGCCAATAGCTGCTGCTTTTGGAGAGACTTTTCAACAACACGCATTTACGTATCCAGACTTCAATCCCAAAGCATCCATGGAAACTACACTTATGGACATTGAAAGACCAACAAAACATCATAAAAACATCGGCTGGAATCCCATCAAAAGTTCTGCTCAGACATCAGATGCACAATATGTATCTTTCCCAAATCTTCTTTCGTTTATGGATTCCAATCACATAAGTCCATTGGGATTAGTGAAGGCCAATGAGGAGGCTTGTCCTATAACCAATAGCACAACTTCTCTGGACACTTTCTCTCAGGGAATCTTGGGGAATCATAACTATCTCTTTAAGGCATGCCAAGAGACCAAAAAGAATGGAAGACGTTCAAAAATTTCTCATCCTCAAGACCACATCATAGCTGAAAGAAAGCGAAGAGAGAAGCTCAGCCAGCGCTTCATTGCCTTATCTGCCCTTGTTCCTGGACTACAGAAGACGGACAAAGCTTCTATTCTTGGAGATGCTATCAGCCACTTGAAGCAATTGCAGGAGAAAGTAAAGGCTCTCGAGGAGGCACAAAACATGAAGAAAACTGTGGAGTCTGTGGTAATTGTGAAGAAATCTCAACTGTCCTATGATGTTAACAATTCTTCAGAATATGATGGTCCGTTATTTGAAGAAACAATTCCCGAAATTGAAGCAAGATTTTGTGGGAGAAATGTCCTCATAAGAGTTCACTGTGAGAAGACCAAAGGTGTGGTGGAAAAAACAATCCATGAAATTGAGAATCTCCACCTGAAAGTCACCAACAGCAATGCCATGGCATTTGGGAGATGCGCCATTGATATGACAATTATTGCTCAGATGGATATGGAATTTTGCATGGGAGTGAAGGATGTAGTGAGAAATCTCCGCTCAGCTTTTACATCTTCCATGTGA


Promoter Sequence:
>Vu_33117::LG9:33035001-33037001(-)
TGTCCTATGTCATATTGTAGCATCTGGAATATTTATTTTCTTCGAATTTGATTTACCTGTTTGAAATTACATTTCTTGAATCTATCTTTAGTTATTATTGAAACATTCACTTACTTCAACTTCCCACTCTTTCTTATGTATTTTTATGTTTCGATTTTTTGTTTTCAAGAACAACACATCCTTATAGAAATACATTTTGTTAAATATGATGGAGATGCTTTTAGAATTTTGAACTATGTTCCATGATACATTTCTATTCTCCAAAAAAAAAGTCAAATTTGTGAATAACGTTATTAATGGTTATTAGATAATTCAGACATAACAACCGTGAGAGTTATAAGACGACTTAGTAATAAGATTAAAAAAAAAGATAACGTGAGAGTTATAAAACGACTTAGTAATAAGATTAAAAAAAAAAGGATAAGAAAGGTTGTGGGGATTCAAATCTATATTAGTTCTCGACAATTATAAAAATTAGTTTGATGAGCTTGTCGAAAGATTTTTGATATACATGTTTTCCATACATATGAATTGATAGATATATCCAACCCTAACCTCCTATCAAGGTATCCAAAGGGACATTACTTGTCAAAATACAATTTTCCTATAGTATATGTTGTTGGTGTCAGTGATTTCTTAACGTCACTTTTCTTTCTTCCTTTCGAACGACAAAGTATAATCATTTCAACACTGAACACCCTTTGATTTATGCTCGTTCCAATGAGCCAGACTGTACTTGGGAAGACAAGTTTTTCACCCCACACATGCCACTAGGGAATTGGCTAAAACCTTCTCAAGTCAATGGAAACTGTTGCATTTCACAAAAATTGGGAAACTGTGCTGTATGAATCATTAGGCTTATAATTCATGATCAACATCTTACCACGTTATCACATAGGCTTTCGTTATTTTGTTATTTAATAGCTGATGATGGTGTCACTGCCCTTTGCAAATGATCTTTGACCAAGAAAATGAGAGACTCGGAAAGAGCCAAGGAAGTGACTTAACAAAAGAAAGCAAATAAACACGTACCTTGAGGCTTTGGACACGATGACGGGGACCACATGATGATTCTTGTTTTAAGCTCTTGATCAGGATTTCAATGACTAGTTGGTGAAGAACACCCCAAAGTCCACAAAAACAACAGAAGTTGGGACACTGATTTGTCATTTTGAAGGCAACAACTTGATATAAAATGAGTTGTATCTATGTTCCTTGATTGAAAATGTTAGCTTCCATGGTTGTCCAAGACAATCCACCCCATAAAACCCGTGAGTATGATAGTGCAACTGTTCTATAAGTTGAGATACAGTAACGTCAAGTAGGACAAAGATTATCACAATAACCAAATATATAAGCTGCTGTTTCTGGGACATAGTCCTCATTCTATAGTACACTGCATATACTGCAATATCTGTTTGAGTAAGTTTCTTATCTTCACCAACTTTCTCATAAAGATCTTTAATTATAGTCGACAATGTACATGTACATAGAATCACGGAGTCTCTGTGGTCTGATGATATGGGGATTTTTTTTTCTTACATGTATTGGGTTAGGGATCACTTATAACCCAAATCTGCATCAACTAGTTGAAAATTAAAGTACCAAAGCTTATCAACTTTAAGCTGACTATTGACTTTTCTTCCCTAGCTCTTTTTATTGCAGAATTGGCTTTCTTATGGAGATCACATCTATCAGAGAATTACCTGATATGGTAAGAATTATGAATAGCTCTTGTAAATAATGATATTTGAATCTAGGGTAACTTTTACCCTATACTTAGTTGATAGAGAATCGTTTTTCTAAAAGTTGGAAGGATTTAACACTGGTGAGTTAAAATCTGGCATTTCGTTGTTAAATAAGAGATATCTACTATAGGAATCAGTAGCAGATGAAAATACTTGAATCTTTTCCTTGCTAGAGCTTGGTTGTTGAAATGTCTTTCATGAAAGGTTTTTATGGTAAATATATGATGTTTTCTGATCTAGAAGGAACAGGAA


Gene Sequence:
>Vu_33117(-)
ATGATGGAGGACCCTAATTTGCTCCGTCAGTGGCACCTGAGTTCTATTGATGACCCTAACTTACTGCCAATAGCTGCTGCTTTTGGAGAGACTTTTCAACAACACGCATTTACGTATCCAGACTTCAATCCCAAAGCATCCATGGAAACTACACTTATGGACATTGAAAGACCAACAAAACATCATAAAAACATCGGCTGGAATCCCATCAAAAGTTCTGCTCAGACATCAGATGCACAATATGTATCTTTCCCAAATCTTCTTTCGTTTATGGATTCCAATCACATAAGTCCATTGGGATTAGTGAAGGCCAATGAGGAGGCTTGTCCTATAACCAATAGCACAACTTCTCTGGACACTTTCTCTCAGGGAATCTTGGGGAATCATAACTATCTCTTTAAGGCATGCCAAGAGACCAAAAAGAATGGAAGACGTTCAAAAATTTCTCATCCTCAAGACCACATCATAGCTGAAAGAAAGCGAAGAGAGAAGCTCAGCCAGCGCTTCATTGCCTTATCTGCCCTTGTTCCTGGACTACAGAAGGTATACAATATATCAATGTAAATGCTTTTATGTGGTTCTCCTTTTCCTGTATATGATGTACACTGATCACTATATTATAGTCCTTCAAATTATGTAACTGTTGTTATCATTTTAGTTCTTAGGTAACTTGATAGAAAATTTAAAGATCAATTAGCACACAAATTCAAAGATTAAAATACAAGTGGCAGGTAATTTTAAGGATAAAACTGTTGATTAATTAGCTCCTACTAGCTGTGTAGTTGTTAAACAAGTAGGTATTCCTAGCGTTACCATTTTTTGTGTCCATTCTGTGTGCTTTTATCACATGCATCGGTCACATTTTTGAATCAGACGGACAAAGCTTCTATTCTTGGAGATGCTATCAGCCACTTGAAGCAATTGCAGGAGAAAGTAAAGGCTCTCGAGGAGGCACAAAACATGAAGAAAACTGTGGAGTCTGTGGTAATTGTGAAGAAATCTCAACTGTCCTATGATGTTAACAATTCTTCAGAATATGATGGTCCGTTATTTGAAGAAACAATTCCCGAAATTGAAGCAAGATTTTGTGGGAGAAATGTCCTCATAAGAGTTCACTGTGAGAAGACCAAAGGTGTGGTGGAAAAAACAATCCATGAAATTGAGAATCTCCACCTGAAAGTCACCAACAGCAATGCCATGGCATTTGGGAGATGCGCCATTGATATGACAATTATTGCTCAGGTATAATCTTTGTACAACAGTAGCATGTATAAGTAATATTGAAACTTTTTGTTGACACTGCAGAACTGAATGAGACAACAAACATGTTTAGTTGATATCTATGCATCGTTTTTCATAATTATTTCCACTAAACTGTAATTTTCTTTCAATATGGTGAATTATATTTGTTCTGCATACAGATGGATATGGAATTTTGCATGGGAGTGAAGGATGTAGTGAGAAATCTCCGCTCAGCTTTTACATCTTCCATGTGA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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