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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_33058 LG9 31907922 31908727 hypothetical protein
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/C 31908126 downstream_gene_variant
G/A 31908127 downstream_gene_variant
C/A 31908134 downstream_gene_variant
G/C 31908135 downstream_gene_variant
G/T 31908194 downstream_gene_variant
T/C 31908212 downstream_gene_variant
T/C 31908283 downstream_gene_variant
T/A 31908529 downstream_gene_variant
T/G 31908629 downstream_gene_variant
G/A 31908664 splice_region_variant&intron_variant
T/C 31908680 synonymous_variant p.Leu16Leu
T/C 31908686 synonymous_variant p.Thr14Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_33058.1
MGIFSIAIPWKMSTRLDLPEMAEVAHWCLWEDPNDRPVMREIVVALSEIVMSSTEWEASLGGDSQVFSGVLDGR*


CDS Sequence:
>Vu_33058.1
ATGGGAATCTTCAGCATAGCTATCCCATGGAAGATGTCTACAAGGTTAGATTTACCTGAAATGGCAGAAGTAGCTCATTGGTGTTTGTGGGAAGATCCAAACGACAGGCCTGTGATGAGGGAGATAGTTGTGGCATTGTCAGAGATTGTTATGTCATCCACAGAATGGGAAGCATCACTAGGTGGAGACAGCCAAGTCTTCAGCGGGGTTCTTGATGGAAGATGA


Promoter Sequence:
>Vu_33058::LG9:31908727-31910727(-)
GTCAAATTGACTCGACTTATGGTTTGAGTTGACTTGACCACTCTTTGATATAGGGGTGTTGCTCCCTCCACCATCACACCTTTCTCCCTCTACCTTCCATTTACTATTTTGCCCTTAAGTAAAATTTTATTTTTAGGGTTATTTTTTAATTTTACCCATTCACAACCTATTCCACTAATAACCTATTGAGTAAAATATTTTTCTTTCATTTTAACATTATATTTCTTCCTCTCTCTCTTTCGTCGCTGTGAGATACTACAAGTTGCAAAGGTTGGTGGTGGTGGAAAGAATTATCAAGCAGTCTCCCTCTCGTGGTGCAGTGTCGCTCTCGTGGTGCAGTGTGTGGAGTGGTGCAGTGCGTGTGTTGCTTCCTCAAGGTGCGTATTCGAATAAACCTTCAAATAAAACCCTAAAATAAAAAACGTAACCTTTAAGACATCCTTCAACGGATGTCAAAATCCTTCAACGGATGTCAAAATCCTTCAACGGATGTCAAAATCCTTCAACGGATGTTAAAATCCTTCAACGGATGTCAACATCCGTTTAAGGTAAAACGGATGTCGACATCCGTTTTTCCTTAAACGGATGTTGACATCCGTTGAAGGATGTCACCTCCGTTTAAAAGTTACGTTTTTTATTTTAGGGTTTGTTTTATTAGTTTATTCTTTATTTTGGAAATATTTTAATAATTTAATTTACATGTTTTGATTTATTATTTTTGAATATATTTTTAATGTATTTTAATAATGTAAGAAAAATGAAGAAGAAAGAAACGGAGGAGGAGAAGTGAAACGGAGAAGACAAATGAGGTTGCAGAGTAAAACGAAAGACAAATTGTTAAACAGAAATTAGAGATGGAAAGATTGGGTGCACGGAATAAAGTAGGAGAACTAGGTTTGAAATAAATTAAAATAGTAAAAGCAAAAAATTTTAATATGAGAATATAATTGGAATTAAAAAAATTGGGGAGGTGGAGGGAGAAAGGTGTGGAGGTGGAGGGAGCAACACCCTTGGTATAGTTATTGAGTCTTCGAATAAATTGTAGGGGATAACTTGATATTGTTGCTTTCCTTATTCTAATGTTATTTTGACAAAATAGTTATAGCACTTTGACATAGTTATAGAACTAAATCAGCTGTTGATGTTATCACATAATAAACATATTATAACACTGCTAGTTTAACAAAACAACAAAGGTTTTAAAGCATTGTACTTGTCCCTTTGAATTTAACTTGTCTTGTAAGAAATTGTTGGGGATGAATTTATTTTATTTCTTCGTAAAGCTGAGTTGAGAAAACTTTGAACCAAAGTCTCTATACTGAGTTCAAAATCAATCCGTTAAGTTGGCCTTTTGTACGTAGGTAGCAGATTTTGGCCTCGCAAGGCTAGTAGAACGAACCAATGATGAAGAATTCATAGCACCAAGGCTTGTTGGAACACCGGGCTACCTTCCACTAGAGTAGGTTTTGTGCTTTCAAATCATAAGTACACTCTCTTGGTGTATTCAACAGAACCAATTTTCTTGCTACCATTATATACTTAAACCCAAGTCAAAAAAAAACTTACACACCAGTTGATTTTATTCTGACTTGATTGCTTTTTTGCTCCTTTTAGATCTGTTAAGGAGCTTCAAGTGACTATAAAAACAGATGTTTTTGCATTTGGGGGGTGCTGTCAGAGTTGATAACAGGGAAACGTGCACTATTTCGTGACAACCAACAAGCCAACAATATAAAATCACTTGTTACAGTTGTAAGTCAAACTCGTTTTTCATAGAACATTAAAAAGAGAAATAGAATTTAAGGTTGAGAGTATGTACTGTGAAAATGAAATCCAAAAAATCATTAGTTCACTTTTATTCAGAGAAATCTAACTCTGCTGTTGACTCAATACTCAAACATTTATTATTATTATTATTTGAAAGGCTTCTTTTCATCACATTCAGGTTAGCCAAATTTTCAGAAATAAATACCCAGAGAATGCTTTAGCAGACGCCGTAG


Gene Sequence:
>Vu_33058(-)
ATGGGAATCTTCAGCATAGCTATCCCATGGAAGATGTCTACAAGGTTAGATTTACCTGAAGTTCCTGTCTTCATTCACATACTCTATTTTAATTTAATATCTCTCTGTGAACTCAATGGAAATATATATAAAAAGATATTTGTTTTTTAAGAGACAGTAAATTAGTAATTGAGGATATCAGTTTCACTCCGGAGGACCAGTAAATTAGACCTTTTACAGGCTGTAATCTAAACTTTTCCTTTTAAGAAGTCAAGAGCACCCATGAAAAGTTTATGCTTCAAAGATAGTAGGGATTTTATTTATATTCTTATCATAAATTAGGATACATTTTCTGACTAAAACTTCATAGACAACTAGAAAAGGGGTGAAAACAAACAAACGAATGAGTTTCTTAATCACCTAAAACAAACAATCTTTTAAAGGCAAAAGCATTAGATGGGTTTTATGTTTGAACAAAGATAATAATGATCACTCCTTTAACATAGTTATTGTGTGTCTTTAGAGATAATGTAGGGAATAGAATAATGCTGTTGCTTTCCTTAATCTAATATTATTCTGACATAAAATAGTTATATCACTTTTTCACAAGACTCGTTTTTCCCTTTTCATAATTTTGTTATTTGGAACATTTGGCTTTGCAGATGGCAGAAGTAGCTCATTGGTGTTTGTGGGAAGATCCAAACGACAGGCCTGTGATGAGGGAGATAGTTGTGGCATTGTCAGAGATTGTTATGTCATCCACAGAATGGGAAGCATCACTAGGTGGAGACAGCCAAGTCTTCAGCGGGGTTCTTGATGGAAGATGA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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