Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_33029	LG9	31551047	31552249	hypothetical protein LR48	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	31551224	missense_variant	p.Arg60Cys
T/C	31551448	synonymous_variant	p.Ser134Ser
C/T	31551478	synonymous_variant	p.Ser144Ser
T/A	31551620	missense_variant	p.Leu192Met
A/T	31551712	synonymous_variant	p.Ser222Ser
C/T,*	31551719	missense_variant	p.Pro225Ser
T/A	31551721	synonymous_variant	p.Pro225Pro
T/C	31551722	missense_variant	p.Phe226Leu
T/C	31551737	missense_variant	p.Ser231Pro
C/T	31551775	synonymous_variant	p.Asn243Asn
G/A	31551776	missense_variant	p.Val244Met
T/C	31551817	synonymous_variant	p.Asp257Asp
T/G	31552099	missense_variant	p.Phe351Leu
G/T	31552106	missense_variant	p.Val354Phe

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_33029.1

MEEAMRRLNGVAPILGPDPKESSVGENPKRSTAVNKRTLREDGGGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPQASSATADHFFHSFSNNNFTKHSPSLPFASHRSRHSTGSASCFDYPTAVDFSFSNPRNPSSSLNMLLLRDLINTSSNNPSLLSSSTHNFHDQFYNKGSSTFPSLPTVSSSSSSPFIPSYSVSYPLEGASSVNVNTVCGTNFTEKGDDDSGSGFFSRESSDSGLLEEIVNKFLPKAKPNKCESLPKMESVRNPQESVLPSLISESTLVSTAQCYDDTKKGFHKNESFGFSFDHQGLPMQKFDNVNGFHHLQGMAMGNEQTMTNHAENCIVEDVFQYQELLNSFAIRMQNA*

CDS Sequence:
>Vu_33029.1

ATGGAAGAAGCAATGAGGCGTCTCAACGGTGTGGCTCCGATTCTCGGACCCGACCCGAAAGAGTCATCTGTCGGTGAAAACCCTAAACGCTCCACCGCCGTCAACAAGCGGACTTTAAGAGAAGACGGCGGCGGCGGAGCCATGAGGTATCGTGGTGTGAGGCGCAGGCCGTGGGGACGTTATGCCGCCGAGATTAGGGACCCTCAGTCGAAGGAGCGACGGTGGCTGGGAACCTTCGACACCGCGGAAGAAGCTGCCTGCGCCTACGACTGCGCTGCCCGAGCCATGCGCGGTCTCAAGGCTCGCACCAACTTCGTGTACCCCACTTCTCCGCAAGCTTCTTCCGCCACAGCCGACCACTTCTTTCATTCTTTTAGTAATAACAACTTCACCAAACACTCTCCGTCACTACCCTTTGCCAGCCACCGTAGCCGCCACTCAACTGGTTCCGCCAGCTGCTTTGACTACCCTACCGCCGTTGACTTTTCCTTTTCCAACCCGCGAAACCCTTCTTCCTCACTCAACATGCTTCTCCTTCGCGACCTCATTAACACTTCCTCAAATAACCCTTCCTTGCTTTCTTCTTCCACCCACAACTTCCACGACCAGTTCTACAACAAGGGTTCTTCTACTTTTCCATCGTTACCAACTGTTTCTTCTTCTTCATCTTCACCTTTTATTCCTAGTTATTCGGTGAGTTACCCTTTGGAAGGCGCTTCGTCTGTTAACGTGAACACGGTCTGTGGAACTAATTTCACTGAAAAAGGTGATGATGACAGTGGGTCTGGATTTTTCTCTCGAGAGTCTTCGGATTCGGGATTGTTGGAAGAGATAGTTAACAAGTTCTTGCCCAAAGCGAAGCCTAATAAATGCGAGAGTTTGCCAAAAATGGAGAGTGTCCGAAACCCTCAGGAGTCCGTTCTTCCTTCTCTTATTTCTGAATCAACACTTGTTTCCACCGCGCAATGCTATGATGACACGAAGAAGGGGTTTCATAAGAATGAGAGTTTCGGCTTTTCTTTCGATCATCAGGGTCTTCCCATGCAGAAATTTGACAACGTTAATGGGTTTCATCACTTGCAGGGTATGGCTATGGGGAATGAACAAACCATGACGAATCATGCAGAGAATTGCATCGTTGAAGATGTTTTTCAGTACCAAGAGCTTCTTAATTCTTTTGCAATCAGGATGCAAAATGCTTAG

Promoter Sequence:
>Vu_33029::LG9:31549047-31551047(+)

ATAATGCGAACATTTCCAAAATAATTGTATAATTAATCTGTACAATGTTTTGTCAAAATGCATGGCCTTAAAAATGACTAATAATATGAGCCAAATTAAGGAGTATTAATAGGTTAATTGAACTGAGTTACTGTCATTAAGAATAATTTGAATATGTGGATCATGCTTATTAAACAATATATATATATATATATTAGAAATGCACGTTTTAATTTTAATAGTGAATAAAAATGAGGAAATTTAAAAAAAAATTATAAAATGATTATTTTAAGATTTTTTAACTAAAAACAATGTCAATTTGTTGAACTTATATCTGATTGATATGTTTTTTTGTGATTGAAAGATGTGTTAGATCTTGATTTTGGTGATTGAAGTAGAAAAAGAATGGCACAAGTGGGGTTGAACAATAGTGGCCTTTCAAAAGTCTTCGGTTGTAGGACGATGGTGGTCCGAAGTCACTAGGCCTATTAATTAAAATAGAGATGCCAAAAGTTCAGAGGGTATAAAGGTTAGTAATGTTCTTTTGAAAAGTAAGATATCTAAGAAAGCTATATATTCATGCCTGCTTCATAGAACACTGTATAGTGCGATCAAGGACAGACAAAGAAGAAATTATCATTCTGTCATGCATGCACATTATGCAGGGTTGTTCCATACTCTTGCAGTAATTTACTGTACTCTATTAACCACAGATTACCTTCAAATTAATAACAACGTTGACGGGGAGAAAGGAGACATAACGTTAAACTTTTTAATATGTGTGAAAAGTCATACCAACAGCATCAGAGTTTTTATCATTTTTTTATTGGATAAAACTTATTAAATATAGAGCCCCTTTCATAAACTCTCACGACCTTTAATAAATTTTAATAATTAATAGGAATTTATTTAAGAGATTCTGTATAAGATATGATATCATGGTTTGACTTGGATACTTTTTAAGTATGGTTGGTATTAGTTAAGCTTTGATATTTAGTAACTTAGGTTTTTATCCCTCCTCGTGTATAATGTTCTGTATTAACCTTCATTGATATCTATGGAGGGAAACCGTGTTCAAAGATATTGAAGCTAAGAGAACTCTGAACGTTAGTGTTACGACTAGAAATAAGAGAACCTAATTATTGAAGTGAATACAATATTAAAGGTCGAGTCATTAGCTGAAAAATGGATTGGTAAATGATGAGAGGTAACATTATCATTAGCTTCTTGAAAAAAAAAAGAAAAAAAAACTAATTTGATACAAATCAAGGAAATCGATTTGTTATATTAAATTTTACTAAGTTTTTAAAAAAGAACTTTCTCCTACAATAAAGAAGACTTGTTAAGATATAACATAGTGAAAGTTGTTAAGATTTGAAAACATAATGTGATTTCTTTTGCTTACAAATAAGATAGAATGTAGAATGTCATAGGCTTTTTAAGTGATAAGAAACAAAAAGAAAAAATTAATTTGTAAACTGTATCTCGGGGATGACGTCGCTCTTGAAAATAATGTTACTTGTAATTTATAAGCAAATCCGAAGGTTATATGTCAGAGTAAATAACTAAATATTATTTAAGACAGACACTTAGCTAAAAGTAGTTAATTATAAAAGCATAAAAGCATATCCATACACATTTAATATTTTACTTAATCACTAATTTTCTTAAAACTAGTCCGTGAAAATCCTGAAAAAGAAAAAATAAAAAAGAAAGAAAAGTCGGTATTTCTAGATTTGTGTCATCTTTTTGTCTTCCTTCTCTGATTTATCGATTCCTGTGTTAGACATGCATGATTAAATCAATCACTTTCCCAATAAAGAAATATATAAAAATGAAAAAAAACTTCATCTACTTCACCATGTTGCCGTGTGCAATAACTCTTCTTCACGCACCAGCTCTATAAATAAGACCAAAACGCACCGAATTCAAGGCAGCATCAAACCAAAACCCCTCTTTCTCCCTTCGCAAAATAAGTTTACTATTGATAGTACTATTTTTAACACTTTCCGAAAAACTCA

Gene Sequence:

>Vu_33029(+)