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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_32879 LG9 27680836 27682198 PREDICTED: myb-related protein Myb4-like
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Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/A 27680850 synonymous_variant p.Pro5Pro
T/C 27680935 missense_variant p.Tyr34His
A/C 27681136 intron_variant
A/C 27681236 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_32879.1
MVRTPYCDNNGLRKGTWTPEEDWKLISYVTTHGYKNWRQLPKWSVIASHLPGRSDNEIKNHWHAHLKKRFQHNSETNEKVEASTSKQHSLVESIQEESGEVVASSFQNSCQATSQTPDSDSQSPQHTSLRDALCMISELEHEAASNGNLATDNFADFMEQNTDPISAYSWEELYEISYLCEFLAPSY*


CDS Sequence:
>Vu_32879.1
ATGGTGAGAACCCCTTACTGTGACAATAATGGACTGAGAAAAGGAACATGGACACCAGAAGAAGATTGGAAGTTGATTTCTTATGTCACTACACATGGCTACAAGAATTGGCGCCAATTGCCTAAGTGGTCAGTGATTGCCTCCCACTTACCTGGAAGATCAGATAACGAGATAAAAAATCACTGGCATGCACATCTTAAGAAGCGCTTTCAACACAATTCAGAAACAAATGAAAAAGTTGAAGCTTCCACCTCAAAACAGCACTCCCTAGTAGAATCAATTCAAGAGGAATCTGGTGAAGTTGTTGCAAGCAGTTTCCAGAACAGTTGCCAAGCTACTTCCCAAACTCCTGACAGTGATTCTCAATCGCCCCAGCACACATCATTGAGAGATGCTTTGTGCATGATATCTGAACTTGAACATGAAGCAGCCAGTAACGGGAATTTGGCTACTGATAACTTTGCTGACTTTATGGAGCAAAACACAGATCCTATCAGTGCATATTCTTGGGAAGAACTTTATGAAATTTCATATTTATGTGAATTTCTCGCTCCTTCGTACTGA


Promoter Sequence:
>Vu_32879::LG9:27678836-27680836(+)
GTAAGTGTTTAGTACATCGGAGCGCGTATAATTCGGAAAGTTAATTATTTAATTGCTCTTAATTCCTGCTTCCTTGTTGCAGAAATTTACAAGGATTTTGTTCTTTGAAAATTGATAATATTAAAATGAAAACAGAAGAAAAAAGTATTATGTTAAAGAAGAAAAAAGTATGTCAAAATCTGATTAAATGCAAACCAAAACCAACATGCATCCAACGAAACCCTCTTGATTAGGGTTACAAGCTGGGCGATTCACAAGTTAATTTCCTCTGATTGAGAATGAAGAGTGAAAAGGAGAACATACTAGTTCCACAAACCAGGATGTTTTCACACTTTCAGTAGTCAAAGCCCATAAAATAAGAAGACTTCCGATATATAAAGACTATTTTTCAACTAATGGAAAAGAATATAAACTTATATATATTGAAATTAAATTTATCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATGTATAAAAATTCTCAACATGTAGTATGCTGTTTACAGCTATAAATTTGACTCACAATATTTAAACTTTATTAGCACATATTATACCGATTGATATAATAAAGATGGCATGCTTTTGTTACATGATTTATGTGTATAATTTTGTCATCAGTTTTAAAAATCTCATTTTACAAATCCAATAAATAAAAGAATTATTTTATACAAGAATCAGTTTTTTTCTTTGTCAGTTATTATCATAGTATTTCTTTCTCTGTTTAAAAAGAAAGTGTTTGTTTTTTAAGCACAATTTTATGTTATTTCTAGATAATTTTATACCTTCTTTGCATATATATAATTTTATGTTATTTCTAGATAAGAAATTTTAGATTTCCACTTATTCCTCCTCTCTTCTTCCTAAGCACAATTTCAATTGTTTCATGCACGTGCTCTGCTGACTAAAGAATAATCTAGATGCATGGAATTCATTAGTTTTTGTGTTATTACTATAAAAATTTATATTATACTTATTATAAGATACTGTAATCTATCCAAAACCTTTTAGTTGACTATGATACGCGATTTTATTGAAATCTAATCCACTGGAAGCGAGGAAGAACATTCAACTAAGTGGTTGGGTAACGACCCCTTCGAACCAAGGAAGGTGGCTTCAAGTTTCCAATTATACGACAAAACTTGGGTCGCTATTTCGCAATTTGATTCATTCCAGGTTTCATTTCGTAGTATACTTTATTTAAGGGTCGTCATCACCATTGCATTAAGAACACTTATGCAGAAATTTAAAAATTATTTTTTTATTAAAAATCATATAAATTTTTTATAAAAAAGGTATTCTCCTATTTACCTATATTCTAAGTTTTCTTGATTTTACTAAAATAGTTTTGATTTTTTTATTTTACCTTTTTCATTTCCACATCACGTAAAAAAATTCGCAAAAGAATAATGAATACAATCTTGAATTTTTATTATAGAGAAGAAGAAAGATTCCATTAGTGCAGTAATTAAAAAGCATTATTTCCATGAAAATTTTCTATTTTAATATTTGAACTGCTACCTCTTTCTGAACGACAACCGTGTAAGGTTTTTTTACACGGACTAAGAAAAATGTTAGATGTCACTTATTCTGTTGAATATCTCAACCCCAACTGTACGAAATGGAAGCAGGATGTGTTTTGTTTGAGTGTAAATTAGAATTAAAATAATCAAAATTTGACTACAAATTGCAGTTATAGTAATATTTTAAGACCATGGTTACCAATTTTCTTAGTTTATTAGCATGAAAACAATCATGTATGCCTCATTCTTCCCTGCACGCATTCTCATGGTATATAAAGGTAAAGTGTCTTGCTGCGAGTGTCTTTCGCCAAACTCTCTTCTTTCTCGAGTGTCTCTCTCTCACACACAAACCCACACAGAATCAACAACGATACCTTCAGAGTGTTGTTACATATATAGTGAGAGAGAGAGTTTGATAGGTTGAGAAAGA


Gene Sequence:
>Vu_32879(+)
ATGGTGAGAACCCCTTACTGTGACAATAATGGACTGAGAAAAGGAACATGGACACCAGAAGAAGATTGGAAGTTGATTTCTTATGTCACTACACATGGCTACAAGAATTGGCGCCAATTGCCTAAGTTTGCTGGTAATACAACTGCATCAGTTATCTACCTTCGGGAATGAATACTAATTTCATGTTAAGTTTTCACATCAGTGTGGGAAGTTTAAACTGATCGTTAATTAAAGTTTAAACTGTTGTTTTTGAAACATTTAGATCATATGAGTTGAATCAAGACTTGGTACATAAAAGCTATCTGTTTGCTTCTCTTTTTCTAAATAGATAAACAACTTCATATCACTCTCTTTTTTCGAAAAAAGACATGATCCATGGCGTATTTATCTTAATTTGATTATTGTTTTAAACTGTGAGGGGAATTTAAAAACTCTACTTATCTCCAGAATCTCAACATATTCATCATTAGGCCAGGCACCAAAAAGGGAAAATTGAGTTCATATTCTACTGTTTGGATTCAATATAATTGTGCAGCATGTTTTCAGGTCTTTCTAGGTGTGGAAAGAGCTGCAGATTGAGGTGGATGAATTACTTAAGGCCAGGCATCAAAAGAGGGAACTACACTTACGAAGAAGAAGAGATAATTATCAAACTGCACCAAATTCATGGAAATAGGTATACGCACAGCAAGATTACATGATTGTTACATGAGTTTAATTTCTATTCACCTTTAAACTGATAAAAGGTCATGCTGCATATGACTTTTCAGAGGATTATCATAAATATCAATCGATTATAACTTGTCATATATGATATGTGATGCACTTATAGTATTACTTGGACTTTTGCGCAAGTTACATGATATAATTTCTTTCACTGCATGTGAATATAAACCATAGTGTTTATTTATTTCAACTCCCTAGGTGGTCAGTGATTGCCTCCCACTTACCTGGAAGATCAGATAACGAGATAAAAAATCACTGGCATGCACATCTTAAGAAGCGCTTTCAACACAATTCAGAAACAAATGAAAAAGTTGAAGCTTCCACCTCAAAACAGCACTCCCTAGTAGAATCAATTCAAGAGGAATCTGGTGAAGTTGTTGCAAGCAGTTTCCAGAACAGTTGCCAAGCTACTTCCCAAACTCCTGACAGTGATTCTCAATCGCCCCAGCACACATCATTGAGAGATGCTTTGTGCATGATATCTGAACTTGAACATGAAGCAGCCAGTAACGGGAATTTGGCTACTGATAACTTTGCTGACTTTATGGAGCAAAACACAGATCCTATCAGTGCATATTCTTGGGAAGAACTTTATGAAATTTCATATTTATGTGAATTTCTCGCTCCTTCGTACTGA

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