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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_32423 LG9 18300115 18303125 PREDICTED: calcium-dependent protein kinase 17-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09159 Environmental adaptation   C 04626 Plant-pathogen interaction [PATH:ko04626]
SNP Position Effect Amino acid change
G/C 18300471 synonymous_variant p.Ala119Ala
G/A 18300641 missense_variant p.Arg176His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_32423.1
MGNCCSGNAADGPADMAAADDKGETNQQSIRSDSNNNNGVDNPATTTTTPPTSAAPPTVTSPPSKSSKPGAMGPVLERPMEDVRATYTIGKELGRGQFGVTHLCTDKVTGEQFACKTIAKRKLVSKEDIEDVRREVQILHHLSGQPNIVELKGSYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTFHSMGVIHRDLKPENFLLLSKDENAPLKATDFGLSVFFKEGEQFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESEHGIFNAILRGHVDFTSDPWPSISPSAKDLVSHMLNSDPKERFTAAQVLDHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFRGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMQMNRMNREEHLYTAFQYFDKDNSGFITTEELEQALREFNMHDGRDIKEILLEVDGDNDGRINYDEFVAMMRKGNTEAATRKRRPIVE*


CDS Sequence:
>Vu_32423.1
ATGGGCAACTGTTGCTCTGGCAACGCTGCCGATGGCCCGGCTGACATGGCCGCCGCAGATGACAAGGGAGAAACCAACCAACAAAGCATTCGTTCAGACAGCAACAATAATAATGGCGTTGATAACCCTGCCACCACCACTACCACCCCACCGACATCGGCGGCGCCACCTACCGTGACGTCACCTCCCTCGAAATCCTCAAAACCGGGCGCCATGGGCCCTGTCTTGGAGAGGCCGATGGAGGACGTGAGAGCAACGTACACCATTGGGAAAGAGCTAGGGAGAGGGCAGTTTGGTGTGACGCATTTGTGCACGGACAAAGTAACCGGTGAACAATTTGCATGCAAAACCATTGCGAAGAGGAAGCTTGTGAGCAAGGAGGATATAGAGGACGTGAGAAGAGAGGTGCAAATCTTGCACCACCTCTCAGGCCAACCTAACATTGTGGAACTTAAAGGTTCCTATGAGGATAAACAATCGGTTCATTTGGTCATGGAGCTTTGTGCTGGTGGTGAACTTTTTGATCGTATCATTGCCAAGGGCCATTACACTGAACGTGCTGCAGCTTCTTTGCTCAGAACCATTGTGCAGATTGTTCACACCTTCCATTCCATGGGTGTCATTCACAGAGATCTTAAGCCTGAAAATTTCCTCTTGCTCAGCAAGGATGAAAATGCACCCCTCAAGGCCACCGATTTTGGTCTTTCCGTTTTCTTCAAAGAAGGAGAACAGTTCAAAGACATTGTGGGAAGTGCATATTACATTGCTCCTGAGGTTTTGAAGAGGAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATCCTTCTATGTGGTGTTCCTCCATTTTGGGCAGAATCGGAACATGGTATATTCAATGCCATCCTAAGAGGCCACGTTGATTTTACAAGCGATCCATGGCCTTCAATTTCACCTTCGGCAAAGGATCTTGTAAGTCACATGTTGAATTCAGATCCCAAAGAAAGATTTACAGCAGCTCAAGTTTTAGATCATCCATGGATCAAGGAGGATGGAGAAGCACCTGATAAACCACTTGACAATGCTGTACTGAATAGGCTCAAACAGTTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTCATTGCTGGGTGTCTATCAGAAGAAGAAATCATGGGGTTGAAGGAAATGTTCAGGGGCATGGACACTGACAACAGTGGAACCATCACAATTGAAGAGCTCAAACAAGGGCTTGCAAAGCAAGGAACAAAGCTTACAGAACAAGAAGTTAAGCAGTTGATGGAAGCTGCTGATGCTGATGGCAATGGAACCATTGATTACGACGAGTTCATCACGGCAACGATGCAGATGAACCGAATGAACAGAGAAGAACATCTTTACACAGCTTTCCAATACTTCGATAAAGATAATAGCGGGTTCATTACCACTGAAGAACTAGAACAAGCTCTCCGTGAGTTTAACATGCACGATGGCAGGGACATCAAGGAAATCCTTCTAGAAGTTGATGGAGATAATGATGGGCGAATTAACTATGATGAGTTTGTGGCAATGATGAGAAAAGGAAATACAGAAGCTGCAACGAGGAAGAGACGTCCCATAGTGGAGTGA


Promoter Sequence:
>Vu_32423::LG9:18298115-18300115(+)
TGAAAACAGTGCTAAAGATGAAGAAAAAAAATAAAACATTAAATATCTAAACCCAGTACATGTTAATAGTTTAAAAATAAAATTGGAATAAGAATTAATTTGGTTGAAAAGGAAGAAAAACACAATAATAATAATAGAAATAATAATAAAATAGGTTCCAATATGTATATGATGGTAAACTATTGTTTGTGGGATCTACAAAAGACTTTATAATTTGTATGTGTATAGTAAATAAGGGGACATAGTTAGCATTTTGTTTGACTATTGTATGTGTTTGGTTGACTTTATATGATTGTGACGTCTTAACATCAATATGTGAAGACGTATTGAATGGGTTATGATTTAATATATTTTTGAGGGTGAAGTCGAGAATATAAGGGTTTTTCCTGTTAGTAGTATATGTATGAGGAGATAGACGTGTTATTTTGTACCTCATATAAATAATGGCTTTTGGGTTTCGACCGTGCGATATGGGAAAAAGGCTCTCTTTAGCCTTATGTGTGAAAAAAGAGTGGCATTTGAGTGTTGCACCTTCTTTGTACAGGGAGAATGATATTTTGCCTAGTCTTTGGCTCGTCACTGAGTATAGTCTCGTTGACGGTGTATCGTTTTTACTCGTAAGTCCTTCCGAAGTAGGGAAATAGGTTCTTTTAGCCGCGAGGGCGGGACGACTCTAGTGGGTTATTCGGTATAACAGGTGTTTGAGGTTGGGTACAAGAGATAAACCAAGGTCCTTTCATGATGATGTTAGGGTTCATGATGATGATGTGCTCGAGATTGTGTTCATAAAGATGACATTGATGGTATGATCATGATACGACTAATGAGAATGTTGGTGAGGATCATAATGTGGAAATGATGATGTTAGTAAAGATAGCCTTGTAGATGAATTTTTTTCATTAAGTTGTGCTTATTTGCTATGTATATATTATATTGTTATTGGTTGTGTTAATGGTAGCTTACACATACTTGTTTGTGCTTGTGTTTATGTTGTGTCTTGCGATGATTGTATGACCTTTGGGTTTATAGGGAGCAAAGGATATTGCAAATGTACAAGATGTATGATAGAGACACGAGAGTGGGGGAAAGACTTGACACATACTTTTCACATAGTTTGGATGACTAACTTAAGAAAAAAACCTCTAAACTAATTAAGCCTTAATACATGTCTAATAAACTTACACTTGACCGAAAATACACTACCTAAATAAATTATACTCAAAAAAGCTTCATGATAATTCAAGATGACCTAAGAAAAAGAGTTTAGGACCATCTTAGTAGAAAACTTTAAATTTTATTAAAAGTGTTTGACCATGAAATATATCATCTAAGTGTTTTACTTGCTGTAATAACATCTCATCCAATATACTCCTATATTATAGCTATAAAAATTATTAGTTTAACAAGTTTTATCCGGGTGTTTCTAAGTTTATTATCTTGGATGGGATTCAACAATGTTTTACACATGATGAGGTGGTGGAATGAGATTTTTTATATATGGATTATCTTCTACAATTAATATGATTAATGAATTTTTTTTGTAAGAAATAGGTAGATACCCATTTAATTTTTATTTCCACTCCGAAAAATTCTCTTCACCCTTGTCTCAATAAACCCTAACCATAACACGTAATAGACACGCCAAAGACTCCTTCAAAATGCACCCTCTAACCTTCCTACATTCTCTCTCATTGTCAAACGCCTTCCCCTAATTTCATAAACTTTTCTTTCAACTTTCTTGTTTGTTTTTTATTTTCCATTTTCACTCTTTTTATTTTTATTTTTTATTTTATTATTATTATTATTATTATTATTATTATTTTGTTTTAGTCATTCCTCTCTCCTAATTAACAATCTATCTTTCAACTCGAAAACCAATAATTAATCACCATCCTTCCCATTGTTCCTCCTTATATATCTCTCCCTCGCAAACGCACCTTCTCTCTCTCTGTACAAAACTTTTCGAATCTTTTTGGTTTTGCTCCCTCCGTTCTTCTCCA


Gene Sequence:
>Vu_32423(+)
ATGGGCAACTGTTGCTCTGGCAACGCTGCCGATGGCCCGGCTGACATGGCCGCCGCAGATGACAAGGGAGAAACCAACCAACAAAGCATTCGTTCAGACAGCAACAATAATAATGGCGTTGATAACCCTGCCACCACCACTACCACCCCACCGACATCGGCGGCGCCACCTACCGTGACGTCACCTCCCTCGAAATCCTCAAAACCGGGCGCCATGGGCCCTGTCTTGGAGAGGCCGATGGAGGACGTGAGAGCAACGTACACCATTGGGAAAGAGCTAGGGAGAGGGCAGTTTGGTGTGACGCATTTGTGCACGGACAAAGTAACCGGTGAACAATTTGCATGCAAAACCATTGCGAAGAGGAAGCTTGTGAGCAAGGAGGATATAGAGGACGTGAGAAGAGAGGTGCAAATCTTGCACCACCTCTCAGGCCAACCTAACATTGTGGAACTTAAAGGTTCCTATGAGGATAAACAATCGGTTCATTTGGTCATGGAGCTTTGTGCTGGTGGTGAACTTTTTGATCGTATCATTGCCAAGGGCCATTACACTGAACGTGCTGCAGCTTCTTTGCTCAGAACCATTGTGCAGATTGTTCACACCTTCCATTCCATGGGTGTCATTCACAGAGATCTTAAGCCTGAAAATTTCCTCTTGCTCAGCAAGGATGAAAATGCACCCCTCAAGGCCACCGATTTTGGTCTTTCCGTTTTCTTCAAAGAAGGTTTATCTTTTCTTCTCTTTCTTCCACTTTTTCTGCTCTTTCTTCCACTTTTTCTGCCTTTATCCCATTCAGTGTCTTCCGTTTCCATGCAAATTGTAACACATTGATTTGTGCTGCACAATTATTAGTGCCCATTTGTTTTAAGTTTTTCAAACATAAATATGTAAAAACATTTGAGAAAGAAAACAGTCTTTGCGTGAGAATCTTGATTCTTCGTATGTCTGTTTTAATGGCATATTTATTCTTTAACAGGAGAACAGTTCAAAGACATTGTGGGAAGTGCATATTACATTGCTCCTGAGGTTTTGAAGAGGAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATCCTTCTATGTGGTGTTCCTCCATTTTGGGCAGGTCTATATAAATTTTTTCTTTTCAAACATACCACTTTGTGCAAAACATTATCTAAAAGAAAAAGGAGATACATATTTCTTTTGCCTTGTGATAATTTACTCTAATACTGTATAATATACAGTATTAGGAATTTTTTTATAACTGTTTTTAATCTAAAGACTGTAATGGCAAAAAAATAACAGTTTCAAATACTAAATTGTTGATTTAGTGCTCGTTTATTTTTCTAAATCTATGGTGTTTTGAACTGAAAAAGTTAATTGGTTTGACAGAATCGGAACATGGTATATTCAATGCCATCCTAAGAGGCCACGTTGATTTTACAAGCGATCCATGGCCTTCAATTTCACCTTCGGCAAAGGATCTTGTAAGTCACATGTTGAATTCAGATCCCAAAGAAAGATTTACAGCAGCTCAAGTTTTAGGTAAGCATATACTTTTCGCTCTTGTTGCTTCACTTTCAATGCTTTTTCTCTCAAATCGCTTGAATTCATTTAACAGAGATATTTTTGTGTAACAACAGATCATCCATGGATCAAGGAGGATGGAGAAGCACCTGATAAACCACTTGACAATGCTGTACTGAATAGGCTCAAACAGTTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTACATCTTATTCTGCCCTAATTCTTATGGAGATAATTTATTTTAAGGATTTGACTCGTACAAAATAAACAAAAGTGAAGTAGCTAATTTTAATCATTGATGAGAACATAATAGTTGACATTCTAACACACGCATGTTTTGGTAAATGCTGTAAGTAATTTCAAACATTGATCTGTCATCAAACAGTTGAGATTACTTTTCCTTCATTCTTTAAAGCAAATTGCTAGCTTCACAGGATATTAGTTCTTCTTTTTGTACCTTCAGATACAATTGTTTAGCAATTCTAGCAACAAGTAGAATAATGATTTTGACCTGCATGTTTTTATTAGTCAGCACATTTCTCTTGCTCCACGTTGCATAGTGCAGGAAGAAAGAAAAAATAACATTAAAATTTACAAATGAATAGGTCATTGCTGGGTGTCTATCAGAAGAAGAAATCATGGGGTTGAAGGAAATGTTCAGGGGCATGGACACTGACAACAGTGGAACCATCACAATTGAAGAGCTCAAACAAGGGCTTGCAAAGCAAGGAACAAAGCTTACAGAACAAGAAGTTAAGCAGTTGATGGAAGCTGTAAGTTATTCTTCTCTCCCATTCTGTTCCAGTAGTACACCCAGATCACAATCATTTACACAAATAAAAATTCTCACTCTTGTACAAATTACAGGCTGATGCTGATGGCAATGGAACCATTGATTACGACGAGTTCATCACGGCAACGATGCAGATGAACCGAATGAACAGAGAAGAACATCTTTACACAGCTTTCCAATACTTCGATAAAGATAATAGCGGGTAAGAAGTCCTACTAGATTGAACATGTATACACATGCATACATATATATTCATGTCAACCCTAAGTGAAGTACTTAGTCAAGGTTCTAATGTCATTTTCGTGCCACCAAATTAGGTTCATTACCACTGAAGAACTAGAACAAGCTCTCCGTGAGTTTAACATGCACGATGGCAGGGACATCAAGGAAATCCTTCTAGAAGTTGATGGAGATAATGTAAGTGCTACACGTAATTAACTTCATTATTATAATTAAAAGAAAAAAGAGGATTTAGTTATGAGGAAATTTAACAAAGTTGAGCACTTCCCTTTTCATAATTGTGTGTTAACATGGTTGATGATTATGAGGAAACTGTGATGTTACACAGGATGGGCGAATTAACTATGATGAGTTTGTGGCAATGATGAGAAAAGGAAATACAGAAGCTGCAACGAGGAAGAGACGTCCCATAGTGGAGTGA

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