Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_32375 LG9 17293986 17294852 PREDICTED: scarecrow-like protein 34
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 17293988 splice_region_variant&synonymous_variant p.Phe190Phe
G/A 17293997 synonymous_variant p.Phe187Phe
G/C 17294003 synonymous_variant p.Leu185Leu
G/A 17294011 synonymous_variant p.Leu183Leu
T/A,* 17294046 missense_variant p.Tyr171Phe
C/A 17294048 missense_variant p.Met170Ile
T/C 17294062 missense_variant p.Ile166Val
G/A 17294119 stop_gained p.Gln147*
G/A 17294125 missense_variant p.Pro145Ser
C/T 17294132 stop_retained_variant p.Ter142Ter
A/G 17294183 synonymous_variant p.Ser125Ser
A/T 17294203 missense_variant p.Cys119Ser
G/A 17294204 synonymous_variant p.Ser118Ser
G/A 17294366 synonymous_variant p.Leu64Leu
C/T 17294396 splice_region_variant&synonymous_variant p.Ala54Ala
T/C 17294399 splice_acceptor_variant&intron_variant
C/T 17294411 upstream_gene_variant
G/A 17294420 upstream_gene_variant
A/G 17294436 upstream_gene_variant
C/T 17294438 upstream_gene_variant
G/A 17294439 upstream_gene_variant
A/G 17294459 upstream_gene_variant
G/A 17294472 upstream_gene_variant
C/T 17294490 upstream_gene_variant
T/C 17294510 upstream_gene_variant
A/G 17294518 upstream_gene_variant
C/T 17294521 upstream_gene_variant
A/T 17294523 upstream_gene_variant
T/A 17294551 upstream_gene_variant
T/A 17294555 upstream_gene_variant
C/T 17294556 upstream_gene_variant
C/T 17294562 upstream_gene_variant
C/G 17294570 splice_region_variant&intron_variant
A/T 17294576 splice_donor_variant&intron_variant
A/G 17294632 stop_lost p.Ter36Glnext*?
T/C 17294643 missense_variant p.Tyr32Cys
G/A 17294646 missense_variant p.Pro31Leu
C/T 17294679 upstream_gene_variant
C/T 17294689 upstream_gene_variant
G/A 17294698 upstream_gene_variant
C/T 17294702 upstream_gene_variant
T/C 17294722 upstream_gene_variant
T/C 17294731 upstream_gene_variant
C/T 17294744 upstream_gene_variant
A/G 17294757 upstream_gene_variant
C/T 17294762 upstream_gene_variant
C/T 17294768 splice_region_variant&intron_variant
A/G 17294771 splice_donor_variant&intron_variant
C/T 17294772 splice_donor_variant&intron_variant
T/G 17294773 missense_variant&splice_region_variant p.Lys27Thr
C/T 17294807 missense_variant p.Glu16Lys
T/C 17294808 synonymous_variant p.Leu15Leu
C/T 17294817 synonymous_variant p.Arg12Arg
C/T 17294818 missense_variant p.Arg12Lys
T/G,A 17294833 missense_variant p.Tyr7Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_32375.1
MFNDVDYVSQFRRGLEEATKLLPSGPNEHNSLQSGVVKGEERDGGKDRSKKKGSGHEQFSFLNSQRITATEYLKAYQVFLSSTPFKKFTYFFANTMIMEAATKSETVHIIDFGILYGFLWPILIKFLSNREGGPPKLRITGIEFPQPGFRPSERIDETGHRLANYYKRYNVPFEYHVVVSRNPRPQLLPI*


CDS Sequence:
>Vu_32375.1
ATGTTCAATGATGTTGATTATGTTTCCCAGTTCAGGAGAGGATTAGAGGAAGCTACCAAGCTTCTTCCTTCTGGCCCTAATGAACACAATTCCTTACAGAGTGGAGTAGTGAAAGGTGAGGAGCGAGATGGAGGGAAGGACCGATCAAAGAAAAAAGGGAGCGGTCATGAACAATTTTCTTTCCTGAACTCTCAGAGGATTACTGCTACAGAGTACCTGAAGGCATATCAAGTGTTTCTATCTTCCACACCTTTTAAAAAGTTTACATATTTCTTTGCAAACACAATGATTATGGAAGCTGCAACAAAATCAGAAACCGTCCATATCATTGATTTTGGCATCCTATATGGTTTCCTGTGGCCAATTCTTATAAAGTTTTTATCAAACAGAGAGGGTGGTCCTCCCAAGCTGAGGATCACAGGGATAGAGTTTCCCCAACCAGGATTTCGTCCCTCTGAAAGGATTGACGAGACGGGTCACCGTCTTGCTAACTATTATAAGCGTTACAATGTACCCTTTGAATATCATGTCGTAGTATCAAGGAACCCTAGACCTCAACTTCTCCCAATTTGA


Promoter Sequence:
>Vu_32375::LG9:17294852-17296852(-)
TCTGAATTGCTTTTCAAAAAGGAGTTTCTAATACAAAGAGGAGTACTGCACCGTAGTGCAATTGCAGAACTCGACACATGTCTTCGAGTCCTCAGCTTATTATAATAATCTTCTTCTCGAAAAAAATGATTCTCTAATCCCACAAATGGATCATTATGGTCACTGCCAAGTTCCACAACTGGTTCATCATCGGTAAATCTGAGAGTATCACCATCATCTATGACACATCGAAGGTAAATGTATTAAGTATGTGCGTGTGTATATTACATTCAAAATAACACCATCATAGGTTTTTGTGGTTATTTTCTGAAATAGCAACCCGAATAATAGTTAAAAATGAAATTTTTTTCAAGACATTGTAATTAAGATTATTCTAAAATGGAAAAAGTAGCAAGCAACAGTTATTCTTACCCATTCGGCATCTCTTGGTTTTCGTAGCATACGGCTTCTCTGGTGACTTGGGGCAAGGGCTATCTTCCTCCACCTGAGAGGAAAAGAAAAACTATAAATATAAAAATATATAAATATAAAGACTGAAATGTATGTTACCTTGTCGATGTTACTATGGAAGCCTTTCAAAGGAAACTGATCTTCTGGAGTTAAGTAATCCGGTGTGCTGGGGAAGACAAACAACGGTGAGAGTTAGAGAGAGAAGGTTGAAGGGAGTAAGACAGTTCTTACCAAAACAGTTGCTGACTGAGAATGATGTCGTCATCGTCTCCGGATGAAGGCAACAGCTCCGGCTTTTCTTTCTGCATTTTCGTATTCATCTGGTTGGGTGTGGGAGACGAACTGTTTCAGAGTAATAAAAAACTTATTTAATCTGTGATTGGACCTGTCATTGAAAAGCGCAGCTCATGATGGCAAATTCTAATACTTTCTTTCTACACTTTATTTACTTAAAATCAAAATCATGCAATATATTTACTTTTATTTCGTTTTTTACTATTGTATTTATTATGGTTCAAATCAATTTGAAGGAAAATGTGTTGTATTTTTTTTTATTTAAAACATAAATACGATGTACAAAAAACTGAAAATTAAGTAAGAAGTAGTTTACGGAGTGTTATATAGTAAAAGAAATAATTGTTTGTAAAGATATAATTTTAAAAAAATTGTATTATAAAAAATTATAGTAGTAACATTTTATTCTACTAAAGCATATGGTAGTTAATTGTTTTAATCAATGCTTTGTTCCAGGATTTAGGAAGTGAGTAGATGGATTTGAAGGTGAATTACTTGTTGTTTATTTGAATAGATTTGGAGGTAAATAAGGGTGAATTTAGAAGTAAAGTTTATAAGAATTAGTGTAGGATTTGATTGATATCATAAAAAAATTATTTAATTGGTAAAAGTTGAAAATTACCAAAAGTCCCTAGTTATTAAAATTCTAATAGCTTCTTTCTACACTTTATTTACTTAAAATCAAAATCATTCAATATATTTACTTTTAGGTTTAATGTCTCAATAAGTTCCTATTTTTGTCCAGAATTTTAAATAGGTCCCTTTCTTTTTTTGCATCTCGATTGGGTCCTTATTTTTGTAAAATTAATGCGTCAAATTAATCAAACAACGTTAAGGATTATGTCACCTAGCATGCTGACATTGTAGTTTTAACATAGGTGTCATTAGAAACGTGTGTCAATTCTTTTATTTTAAATTTTAAATTAAAAAATTAAGTATACAGAGTCAAAATTTAATTAAAGAAAGGGCAAAGTTGGGAATTCGTATTCTACTTTCTGCTGAAAGCCCCACTCTCTCTGCAATTGCGAAATCGAAATAAAATTGGGGAAATTTGAATTTTAGGGCTCGTCACTCATCCACAAAATCCTTATTGTTCGATTGGAAGCATGAGTGTTGGTGGGTGAAGAACATCAACTTGAAATAATTGTGCATATGCAACTTGAAATATCGTTGTCTTTTCTCAGCCACCTTCATTTACTGTTAGTCATGGATTCTCATATTTGGATTCTTCTATCGCCAAACTATTGGCACAAAAT


Gene Sequence:
>Vu_32375(-)
ATGTTCAATGATGTTGATTATGTTTCCCAGTTCAGGAGAGGATTAGAGGAAGCTACCAAGCTTCTTCCTTCTGGCCCTAAGTTTGTAACTGGTCTTCATTCAAACGGTGAAGAACAGAAAAATAATTTTGAAAATCGTGGGTAGTGAACAGATGCTATAGATCGGGTGTTTCTGAGTGTGGAAAACCTGGGTAGTGAACACAATTCCTTACAGAGTGGAGTAGTGAAAGGTGAGGAGCGAGATGGAGGGAAGGACCGATCAAAGAAAAAAGGGAGGTAGAAGGAAACTGTGGATTTGAGGAATCTTCTACTGATGTATGCCAATGACATTAGAGTTGCCACCAAATTACTAACGCAAATTCGGCAACACTCTTCTCCCTTCGGAGATGCATCGTAGAAGGTAGCTCACTACTTCGCTAATGGTCTTGATGCACGCTTGGTTGGGGCTGGTTCTAGCGGTCATGAACAATTTTCTTTCCTGAACTCTCAGAGGATTACTGCTACAGAGTACCTGAAGGCATATCAAGTGTTTCTATCTTCCACACCTTTTAAAAAGTTTACATATTTCTTTGCAAACACAATGATTATGGAAGCTGCAACAAAATCAGAAACCGTCCATATCATTGATTTTGGCATCCTATATGGTTTCCTGTGGCCAATTCTTATAAAGTTTTTATCAAACAGAGAGGGTGGTCCTCCCAAGCTGAGGATCACAGGGATAGAGTTTCCCCAACCAGGATTTCGTCCCTCTGAAAGGATTGACGAGACGGGTCACCGTCTTGCTAACTATTATAAGCGTTACAATGTACCCTTTGAATATCATGTCGTAGTATCAAGGAACCCTAGACCTCAACTTCTCCCAATTTGA