Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_32212	LG9	13044645	13045090	hypothetical protein LR48	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/A	13044662	missense_variant	p.Arg121Ser
C/T	13044679	splice_region_variant&intron_variant
T/C	13044724	upstream_gene_variant
G/A	13044727	upstream_gene_variant
A/G	13044750	missense_variant	p.Met114Thr
C/A	13044761	synonymous_variant	p.Val110Val
C/A	13045088	start_lost	p.Met1?

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_32212.1

MMQNPLEPQGLHDDIDWVSLFSSQNSFLGNAKPTMEYASSSSSSSSSSSSLSCALIAENGAHVDEKNDKEKRKGSRVKKTTRPRFAFQTRSADDILDDGYRWRKYGQKAVKNNMHPSLLSKEENGI*

CDS Sequence:
>Vu_32212.1

ATGATGCAAAACCCTTTGGAGCCTCAAGGCTTGCATGATGACATAGACTGGGTTAGCCTTTTCTCTAGCCAAAACAGTTTCCTTGGGAATGCCAAGCCCACGATGGAATACGCTTCTTCTTCGTCTTCATCTTCCTCGTCTTCATCATCCTTGTCGTGTGCTTTGATCGCAGAAAACGGTGCTCACGTGGATGAAAAGAATGATAAAGAAAAAAGGAAAGGAAGCAGAGTGAAGAAGACAACACGACCCAGATTTGCGTTTCAGACTAGAAGTGCAGATGATATTCTGGATGATGGTTATCGCTGGAGGAAGTATGGGCAGAAAGCTGTGAAGAACAACATGCATCCCAGTTTACTCTCAAAGGAAGAGAATGGTATTTAA

Promoter Sequence:
>Vu_32212::LG9:13045090-13047090(-)

TTTTCATACAAAAGGCATTTTAACCAATTAGGAAATTAACATAATCGGTTAAGTTCCATACTTAAGCAAATTTGAAAACCTTTTCATTTAAAACACATCAATGCACTCAGTAAACATGTGCAGGCATAACCACGAGTTTTAATTATACCCATAATCTAATCAGTTAAAACTTGGTGTTTTGCCACTGTTAAGCATATATTGAAATTTGATGAATTGTAACATATTATACAATCATAATAATCGATTAATTCATGCAGATATGCAATGTGCAAAGTGTTTTATCCAATTATTCATTTTTAAACAATAAATACACATACATATATTCCAAGCACAATCAATGATATAATCAAACAACAGTTTTGCCATTTGTGCAAGATACTATATAACATTTATGTTGTCATCATCAAAAACACATATGTGAGATATGGGTTCAGCTATACATAGCTCCCCCTATCAACACTAACCATAGTGAAGCCTTTATCGCATAAGTACTTTCATACATTTAATTGCATTCTAAATCTTAGAAGAATTATGGTAAAATTTAATTCTTTTCATTATTCAAAAGTTATTTCTTTAACCTAAATCAATAAATAAGCATAGTTTTTCTAAACAACACAAGTCTATGTGGAAAAATTATATATGGACTTATCCATTTTATTATTTATAGGATTTGATTCACTTGTAAATAATCGATAACACATAGTATCATCCAAAATGTAATTAGTCATATCCTCATCCTCATTAACCATTAAAGAAGAAAAATCACATAAACGGGAAACAAAAGAAAAAAGGTTCTAGTGAATACTTATCCAAACCGAACTAACAACAGAATATAAGCTTACTCTAACGAAAAGGAATTCTAGCTAGTTTAGATATGCAAATGTCAAAACACCAACGATCATTTCAAAGATTAATATAATCACCCTTGCCTAATGTCCAAAAAGTATTTTCAAGGACAATATCATATGCATCCTTAATATCATGTCAAGTGATATCGATTTAAAGAACATGTATTTCTTATACTTGAATTTAAAAGAAATTGAATATGCATGAATTTAGTCCAAGTCATTTTTTCACAAACAAACTCTCAAACTAAACATAAAAGATAGATTTTATTGTCCAATTGAATATTAGTAAATTACAAATCACCATTGACCTTAAAATGACACAAGATAGACCATTTACTATGAACAATATTCTTTTCTATATATATATATATTCCTATTTCCTTTCCAAGCAATCAAATCAATGATGGTTATCATCAAGCTTTTTCAATTTTAGTATCTTTTAGTTTTCATTTTTATAAAATTTAACACACACACACCACACACCACACACACACACACACACACATATATATATATATATATATATATATATAGTATTTTTCTTTCTACAACGTTTATCATTTTTTTTATTCAATCCGTGTATATACGTTTAAAAGTTCCTTTCTTGAGTTTTTATTGAATGTAGTGGAGTATTTAAAATGTATATTGGTTTTTCCTCGTATGACATCAGAACATCATGTATTTATTTTAAAATTGAAGCATCGAAAAGTGTCAAAAGAGGACCCAAAGTGGTCAAATCTGGGGTTGGTAAACAGCGCATGATTTCAACATGTGTAGGAATATGGTTAAAACATTGAGATAGAAACAAAACCCTTATTCTGGTTAATTCAGTTCAGTGACCTATGTTACACACAATGCTAAACTCAACTAAATTTCAACTACTTTTGTTCAACTGCTCTGTAATTCAAGTACATGCATGCTGTGACACAAATTTAGAAGACGTGACCAACATGCATATCTTTCGTTATCACCAATGCATGTTCTCAGTTTCTTCATACACATACGAGTATACGAGTGGCTGTCCAACCTCTTCTACTTTCCACCATCTTTCTGCGTTATAAATTTCAACCTCGAAACAATCTCATTTTTTGTTCACCGATGGAAAGCCAAGACCCTCCAAACCCTTATTCCTTCGTTTTTACTCCCACGTCA

Gene Sequence:

>Vu_32212(-)