Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_32192	LG9	12752610	12754193	disease resistance RPP13-like protein 4	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/T	12752630	missense_variant	p.Gln522Lys
A/T	12752646	synonymous_variant	p.Ile516Ile
G/C	12752649	missense_variant	p.Ile515Met
T/C	12752698	missense_variant	p.Gln499Arg
G/A	12752699	stop_gained	p.Gln499*
T/G	12752741	missense_variant	p.Thr485Pro
G/C	12752850	missense_variant	p.Asp448Glu
C/T	12752897	missense_variant	p.Asp433Asn
G/A,*	12752902	missense_variant	p.Ser431Leu
T/G,*	12752905	missense_variant	p.Lys430Thr
T/C	12752906	missense_variant	p.Lys430Glu
C/T	12752911	missense_variant	p.Gly428Glu
A/C	12752926	missense_variant	p.Ile423Ser
C/G	12752942	missense_variant	p.Val418Leu
T/A	12752973	missense_variant	p.Lys407Asn
A/G	12752989	missense_variant	p.Ile402Thr
T/C	12753005	missense_variant	p.Ser397Gly
T/C	12753287	missense_variant	p.Ser303Gly
T/A	12753309	synonymous_variant	p.Pro295Pro
A/T	12753390	stop_gained	p.Tyr268*
T/C	12753401	missense_variant	p.Ser265Gly
G/C	12753418	missense_variant	p.Thr259Arg
T/C	12753470	missense_variant	p.Lys242Glu
A/G	12753541	missense_variant	p.Leu218Pro
C/T	12753583	missense_variant	p.Gly204Asp
C/T	12753672	missense_variant	p.Met174Ile
C/T	12753701	missense_variant	p.Glu165Lys
T/A	12753710	missense_variant	p.Ile162Phe
C/T	12753842	missense_variant	p.Glu118Lys
G/T,*	12753874	stop_gained	p.Ser107*
T/A	12754000	missense_variant	p.Asn65Ile
G/A	12754035	synonymous_variant	p.Asp53Asp
G/T	12754043	missense_variant	p.Leu51Ile

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_32192.1

MAIRTNPMKAVPTLLKLLVTVDKQTKLKDLKSELTNIKDLFSKVKQNEQDLLDKLTKVDGYLRNNNIRKLMEDEEMICKEIKESTKKLLPADQFPQPEKANKEATASLPSTQQPEELEVIEKNYESLGYTEMKCLKSLLHFPKNSVMKRRNIILWWVGVGLIEMEAAKENGEYMFGKLMDHKLILPDKYDFVNKLFKVNPLVYGVHESRKKANEGKKLFQTYSEIVTSSHQSDSPACLALNKLKVELSDAFGSKSNHFTSIFNTSASYLIFGSQTMAKMKQLQVLQLGRWLHASPKHHIEVNSEEFLKELRNQEKLKYLSLRGISRISQLPDSIFQLKSLETLDLKACHNLETLPRDIALLKNLKHLNLSQCYLLDRMPKGIDKLNKLEVLKGFVISSSDKIPDLAKLSKLKQLSIHVGSGAIVQDIGFKSGDLSALEKLKISWGVFDTRYSEIELKLPQKLKKLHLEGFPGQHIPEWLKPDKITTSLCELYITGGKLQSVDLQGYAHVSCSLQIIRLKYLQRLNIN*

CDS Sequence:
>Vu_32192.1

ATGGCTATTCGGACAAATCCCATGAAAGCAGTGCCTACATTGTTGAAACTTTTGGTGACTGTAGACAAACAAACAAAATTGAAGGATTTGAAAAGTGAGTTGACCAACATAAAGGATTTGTTTTCCAAGGTGAAGCAAAATGAACAAGATCTACTTGACAAGTTAACAAAGGTAGATGGCTATCTTCGCAACAACAACATACGTAAGTTGATGGAAGACGAGGAAATGATTTGCAAGGAAATAAAGGAATCAACTAAAAAGTTGCTGCCAGCTGATCAATTCCCACAACCTGAAAAAGCAAATAAAGAAGCTACTGCATCACTCCCTTCAACCCAACAACCTGAGGAGTTGGAAGTGATTGAGAAAAATTATGAGAGCCTTGGTTATACTGAAATGAAATGCTTGAAGTCTCTCTTACATTTCCCAAAGAATTCTGTCATGAAGAGAAGGAATATAATCCTTTGGTGGGTTGGAGTGGGTTTAATTGAAATGGAAGCAGCAAAGGAAAATGGTGAGTATATGTTTGGAAAGCTTATGGATCATAAATTAATTTTACCAGATAAGTATGACTTTGTGAATAAATTATTTAAAGTTAATCCTTTGGTTTATGGTGTTCATGAATCAAGGAAGAAAGCAAATGAAGGAAAAAAGCTTTTTCAAACTTACTCAGAAATAGTTACCTCATCTCATCAGAGTGATTCTCCTGCATGTTTAGCACTTAACAAACTGAAAGTTGAACTTAGTGATGCGTTTGGTTCTAAATCTAACCATTTCACAAGTATTTTTAATACTAGTGCAAGTTATCTTATATTTGGATCCCAAACGATGGCCAAAATGAAGCAGTTGCAGGTGCTTCAACTTGGTCGTTGGCTGCACGCTTCACCAAAACATCATATTGAAGTGAACAGCGAAGAATTCTTAAAGGAGTTAAGGAATCAAGAGAAATTGAAATATCTTAGCCTTCGTGGAATATCTAGAATATCTCAGCTGCCAGACTCCATTTTTCAACTTAAGAGCCTAGAGACTCTCGACCTCAAGGCCTGTCACAACCTAGAAACATTACCACGTGATATTGCATTGTTGAAAAACCTCAAACATTTGAATCTGTCTCAATGCTACTTATTGGATAGAATGCCAAAGGGGATTGACAAGCTGAATAAGCTTGAAGTACTAAAGGGATTTGTGATTAGTAGTTCAGACAAGATTCCTGATCTTGCAAAATTGTCAAAACTAAAGCAACTCAGCATACATGTAGGAAGTGGGGCTATTGTCCAAGATATAGGGTTTAAATCGGGAGATTTGTCAGCGCTTGAGAAACTAAAAATATCATGGGGTGTGTTTGACACAAGGTACTCTGAGATTGAGCTTAAGCTGCCTCAAAAGTTGAAAAAGTTGCATCTTGAAGGCTTTCCTGGACAACATATTCCAGAATGGTTGAAACCTGACAAGATAACCACAAGTTTGTGTGAGCTATATATTACAGGAGGAAAACTCCAAAGTGTGGATCTTCAAGGATATGCTCATGTGTCTTGCTCATTGCAGATCATTCGGCTCAAGTACTTACAACGTTTAAATATTAACTGA

Promoter Sequence:
>Vu_32192::LG9:12754193-12756193(-)

TTAATAGCAGTTAAGGTGCATGATTAGTATAATGTACAGAAGTTGCAAACTATGGGCTAGATTCACCCTCTAACTCCAGAGGAATGAAAAAGCGATATCAATCTTGCTGATAAAGCACAACTTACTCATGAAAAACAGTCACTTAAAAATAACCTGTTATTCAATTTTTCATTTCATATTGAAACTCTAAATGTCAAACTAAACAGCACTCATTATACGCAGAAAGTAATTATATTTGTGTATTGCATTTTCTCCTGTATCGAGTCTATATTGATACTTGACATGTACTGGCTGATCTGATCAAGCTACTAGTCTTTTGAACCAGAATGACATGCCTTCTATCGATCCCAAGATGTTTTACAGTCGAAAGCCCAGCCAAGTGATTTGAAAAATATCTTCTCACTTCTTATTGAAGCTTCATCAATCTCTACCCTTTTATATTTCTATTTAGTTAATGCAAAATGGAGAAGTACTTAAACTTTGTCTGAAGTATAGGAGAGATCAGATGTCAATCTTTACTTAGTTGTAACAATGTAATGAGATAATCACATATGCTTGCCATTATACACTGACTTTTAATCTAATGATAGCATTTAGGTATGAATGAGAGTTGCAGCACATGCAGTTTTTATGCTTCAAGGAAGTGTTTGGTTTGCTAAAATATGTTATATTTTCATTTGTGACAATAATTTTCTTACTAAATTGCTAAGATAAGAAAATTATGTTTTGCTTTTACTTCTTGTTCTCAGTTTTAATTTCTTGACTAGCTCCCTATCTTCACCACCTGTTTCTCTACCACTTCTTTATTGTGGATTCTCAGTCCTGAATTGTCTAAGATCTTAAAGACTTATGGGGATATTGTTATAGAAGAATAAAAAGTGAAACTACTGTAATAATCAAACAAAAATCTTTTGAATAGATATAACGAAATTGAGATGATGATTTATTACATTTTTGTGATACTAGTTTGCAACTATCAAAATTTTCAGAACGGAGCAGCATCAGTATTAAACGTCACTTCATTTTCTTATGCAGTTTGGACGCTTAATTTCTTAGTTGGAGTGATATTAAATAGACACATATCCAACGAACAGAAACACCAGTTAACTCTGGACATTTATTCTAACATTTAAAGTACTCTGTTTCAATCCCACATCGACAATACTAGAAATAGTAAATGGAATAATAGGATACAAATATAACATGTTTCACTCTGAAAAACATACTTACCTGGATAGGGTCAATGGACAATCAAGAAGATCCATGGCCTAGAAAAGTGATGTTCATTGCACTTTGAATGAGTGCTTTTCTAAGGTCTGTTGGATAGGGTCAATGGACAATCAAGAAGATCCATGGCCTAGAAAAGTGATGTTCATTGCACTTTGAATGAGTGCTTTTCTAAGGTCTGTCCCAGTGACAGAGCCTATGTCATAATTTGTTGCAGTGGGGGCAGTGGGGGCCTGTGTTCGCGCGGCCTCTTTTAATTCTATCTTTTAAAGTTCTGTATGTAATTAATGAAATGAACTTCTATTAATGGAAGAATATTCTGGTAATTTCAAAGTGTCTTTCAATTACTATAAAATGTTACTTGGGTTCAGGGTAAGTTCAGAATCAAGGAATTTCTGTGGCAGCTGTTCCTGAAAAGAGATATGAAACATTTTTGGGGATTCTTTTCTTTGCTTCTTATTGTCTATTGGAATATCTTGATGACAAAGTTCAGCTCGGTAAAAAAAATATTTCTCTCCAATCTTAAGTCCCATTCCACCTATCTCCAATCTCGAGCAAAAGTATTGTTTCTTTTATCAGGTTTTGATGAGATCATAGACTTGATACCTCAATCTTGTTGCAAAACTTTATTGCTTCGTTAATTGATCTTTCATAGTCTCAAAACATCACACCACTCTGTTCCTCCATCTTATAGGAAAAAATATAGTTTCTTTCGTCAGAGATTTTTCTATAAAGTCACAAGTCTGTTCTTCAGTCTCATAGCAGAAAAAGAA

Gene Sequence:

>Vu_32192(-)