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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_32187 LG9 12660614 12662812 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/T 12661029 missense_variant p.Asn108Ile
A/G 12661418 missense_variant p.Gln176Arg
A/G 12661920 intron_variant
C/T 12662072 intron_variant
T/C 12662112 intron_variant
C/A 12662169 intron_variant
T/A 12662183 intron_variant
G/T 12662672 missense_variant p.Met304Ile
A/G 12662692 missense_variant p.Lys311Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_32187.1
MNAENLKNFCVVDSGKRKFITDEIARLGKGNISSKIISYGEICAATQNFHPDNMIGEGGFGRVYKGHLKTTNQNVAVKQLDRNGFQGTREFLVEVLILSLLHHPNLVNLIGYCAEGEHRILVYEYMVNGSLEDHLLDLPEGAKALDWHTRMKIAEDENFNPKLSDFGLAKLGPTGDKKHVSTRVMGTYGYCAPEYASTGQLTTKSDVYSYGVVLLEMITGRRVIEYSRPEEEQNLVLWVCFQTFLMKKFTQMADPLLKCEYPVKSLYQALAVAAMCLQEEDETRPLISDVVTAVEFLGRKRVEEDEPQPTKKITSTEEEEEEEEDSNEDKQSHKDRDDNHNDQNQDEEKKN*


CDS Sequence:
>Vu_32187.1
ATGAATGCTGAAAACTTGAAGAATTTTTGTGTTGTAGATAGTGGCAAGAGAAAGTTCATAACAGATGAGATAGCAAGGCTTGGGAAAGGAAACATTAGCTCTAAGATAATTTCTTATGGCGAGATATGTGCTGCAACTCAGAACTTTCACCCTGACAACATGATTGGTGAAGGAGGGTTTGGGAGGGTATACAAAGGACACCTTAAAACCACTAATCAAAATGTTGCTGTGAAGCAACTTGACAGAAATGGATTTCAAGGAACCAGAGAATTTCTTGTAGAGGTTTTAATTTTGAGCCTTTTGCACCATCCTAATCTTGTCAACTTGATAGGGTATTGTGCTGAAGGAGAACATAGAATTTTGGTGTATGAATACATGGTCAATGGTTCTCTAGAAGATCACTTACTTGACTTACCTGAAGGAGCAAAGGCTTTGGATTGGCATACCAGAATGAAAATTGCAGAAGATGAAAACTTCAATCCAAAACTCTCTGATTTTGGACTTGCAAAGCTTGGTCCAACAGGAGACAAAAAACATGTGTCTACCAGAGTGATGGGAACGTATGGATATTGTGCTCCTGAGTATGCATCAACAGGCCAATTGACTACAAAATCAGATGTCTATAGCTATGGAGTGGTGCTTTTGGAGATGATCACGGGAAGAAGAGTCATTGAATATTCAAGACCAGAAGAAGAGCAAAATTTAGTTCTTTGGGTATGTTTTCAGACCTTTCTTATGAAGAAGTTTACACAAATGGCAGATCCATTGTTAAAATGCGAGTATCCTGTAAAAAGTTTATACCAAGCTTTAGCAGTGGCAGCAATGTGTCTCCAAGAAGAAGATGAAACTCGACCTTTAATCAGTGATGTAGTTACAGCAGTTGAATTTTTGGGAAGGAAGAGAGTAGAAGAGGATGAACCACAACCCACCAAAAAAATTACTTCTACTGAAGAAGAAGAAGAAGAAGAAGAAGATAGTAATGAAGACAAGCAATCTCATAAAGATCGAGACGACAACCACAATGATCAGAACCAAGATGAAGAAAAGAAGAATTGA


Promoter Sequence:
>Vu_32187::LG9:12658614-12660614(+)
ATGTTCGGAGGTAATTTGCTGTTTAGTACCTGGTTTTAAAAATGTAGGCATTTGATACTTATGTTTTGAAATTTGTATCAATTGAATCCTACCCACTTAACGCCGTTATAAATCTAACGTTTTTCTGACTGTGTATGTGATTTGTGGACGAGCGGTTATGGACGAGCGTTCGCTTCGTTGGACGAGCGTCCTCTTCTGCCTGACTGGGCGTTCGCTTCGCTGGACGAGCGTCCTCTTCTGCCTGACTGGGCGTTCGCTTCGCTGGACGAGCGTCCTCTTCTGCCTGACTGGGCGTTCGCTTCGCTGGACGAGCGTCCACTGAACGTACTTGCGTCCACAGGGCGAGCGTTATCAATTGCTCGTCCAGCGAAGCGAACGCCCAGTCAGGCAGAAGAGGACGCTCGTCCAATGAAGCGAACGCTCGTCCATAACCGCTCGTCCACAAATCACATACACAGTCAGAAAAACGTTAGATTTATAACGGCGTTAAGTGGGTAGGATTCAATTGATACAAATTTCAAAACATAGGTATCAAATGCCTACATTTTTAAAACCGGGTACTAAACAGCAAATTATCTCCGAACATGGAGACTAAGTAGGTAATTAAGCCGAGCAAATTCTACTTAACAATGAACTTTGTTCAATATTGAAATGACACATCTTATTGACACTGCGTTTTATCATTTAGAAATTTATTGCCCTAATGAAAAGCATATTGGAAATGTTGTATTCTCAGTAAATTTTCATTATTATAAATGGCATTTTTTCTTTCTATTAAAAATTTATTTGTTTGACTTTATTTTATTCGTGTCACGGAAAAAAGTACCTGTTTACAAAAAATAGTCAATTTTAACAACTTTTAAAAAGTAATCAAAAGCTGAAAAATAAAATTAACAGTTTTCATTAAATCAATTTGTTTTAAAAAAAAATTATTGTAAACAGACGTGAGTTAAAATTTCTTTTTTTAACTCAAAATAACCACTAAGTTGTTCTATAATAAAATCATTTTTATTTTACCTTAAATAAGCTCTTGCCTGAAAGATAATACAACAATATTATATATTTAAAGGAGTTAGTTGGAATCACAAGTGAGAAGACATGCAACAAATCCATTAAATTAAAATTGTTGTAACAGATAGATGTTACCGAACAAGAGCCATAGCATGATAACTCACTTTGGCTATTTTTGTTATTGGCAAATTTGACTATGTCTTAATATCTATTCCATGCTCATATGCCTTGAAGAAGCAAAAGAAACCATGTGAGATGACAGATTCTCAGAATCTAGAATATTTGCATGGTATTTTGCAGAACAAGGTTTGAATCAATAACAATCAAACAAAGATTTTAAGGCACTTTTGGGGTGTTGGATATTGCTGGGTACGTAACATTTACATAAGAGAAGGGTTTCGAAAGCCAATGCAATAAGTTTCTAAAACTTTGAAAATGGAGCTTTGATCAAATCAAATTTTGAAAAAAGAAAATGAGTTTATTTCCTTGTTGTGCTTCGCAAAAGAGGCTCAACAAGAAGACATTGAAGAAGAGCATTAAGAAAGAAAGAGAATACGAAGATAGAAGTGTCACCTCATTTTCTAACATCTCTTTTAAATCAGGTGATGAGTTGTCATAATTATTGCTCTTATTTTTGTTGTATGTACAGGTTTTGAATTACATTTTTTTCATAATTATGTTTCTTATTCTTACTTTGCATTAGGGTTTTTTAATTGCATTTTCTTATCATATAGATCGAATTGTATGATTTAGAGGCTAAAATGTTGCAAAAATAGTGTTTTTTTATGATAATTTGCTAAAACTATTCAAAATCTCTTAAATTTTGGTCTAAAATGAAAAACAAAATGTGATGTTAGAACAATCAAAATTGTGGTGCACAGGTTATGTAAAACTCATCAAATCTTACAACAAGTGTAAAATAAAAAAGATTTGAAAGGAAAGAGTTTGTCTCATTTCTTTGCAAGTTTATCATTTGTGAAAGAAAAATA


Gene Sequence:
>Vu_32187(+)
ATGAATGCTGAAAACTTGAAGAATTTTTGTGTTGTAGATAGTGGCAAGAGAAAGTTCATAACAGATGAGATAGCAAGGCTTGGGAAAGGAAACATTAGCTCTAAGATAATTTCTTATGGCGAGATATGTGCTGCAACTCAGAACTTTCACCCTGACAACATGATTGGTGAAGGAGGGTTTGGGAGGGTATACAAAGGACACCTTAAAACCACTAATCAAGTATTAATTACTTTAACTTCTCTTTGAAATAGTGTTAAAAGGAAGAAATTATATCCAAGTTTTGACTAACCTTCAAAGCTTTGTCACATGCAGAATGTTGCTGTGAAGCAACTTGACAGAAATGGATTTCAAGGAACCAGAGAATTTCTTGTAGAGGTTTTAATTTTGAGCCTTTTGCACCATCCTAATCTTGTCAACTTGATAGGGTATTGTGCTGAAGGAGAACATAGAATTTTGGTGTATGAATACATGGTCAATGGTTCTCTAGAAGATCACTTACTTGGTGAGTAAATGATGAAATAAATAAAGTAAGTTTTCACTGTATGATCGATTTAACAAGAATCTAATGTTATTAATGAAAAAAAAAATGAATTTTCAGACTTACCTGAAGGAGCAAAGGCTTTGGATTGGCATACCAGAATGAAAATTGCAGAAGGTGCAGCAAAAGGACTTGAATATCTGCATGACCAAGCAAATCCTCCAGTGATATATCGTGATTTCAAAGCATCAAACATATTGTTAGATGAAAACTTCAATCCAAAACTCTCTGATTTTGGACTTGCAAAGCTTGGTCCAACAGGAGACAAAAAACATGTGTCTACCAGAGTGATGGGAACGTATGGATATTGTGCTCCTGAGTATGCATCAACAGGCCAATTGACTACAAAATCAGATGTCTATAGCTATGGAGTGGTGCTTTTGGAGATGATCACGGGAAGAAGAGTCATTGAATATTCAAGACCAGAAGAAGAGCAAAATTTAGTTCTTTGGGTATGTTTTCAGACCTTTCTTATGTACTCAACTTCATAGTATTTCTTTAGGAAAATATCCTCCTACCAAATTTCATTGGTCGAATTGAAGTTTTCAACTTCAAAATCAGTTTCTGACTAGCCCATCAAATTAATGAGTTGAAAATAAGATAGAAAGACCAAATTTTTTAAATTAAAAATTAAAATATAAATACTTTAATAAATTAATTCTTTCATATTTTATTACTTTAAAAATATTATTACTATTATAATTTAAATCATTAATATTTATAAATTAAATTTTAATTATTAATTATAATAAACTAATTTAATATTATAATAGAATAATTTAACATATAAATATAGTAGTTATTTTAATTTATTTGATTAGAACAATTAATTAAACAAATTAAAATTTTATAAAATATTTACATAATCAAATATTTTTTTAGTATATAAATAAATATATTATATGACGGATTGGAATTTTCAATTTGTTTTTGTATGACGGGCCACCTACATCCTGATTTTGGCATGTTGTCACCATTAAAAATATGTTTGGATATGTCTTTATATTTTTTTCAAATCTTTAATTACATAATTAACTTCATTTACATTTATTAATTTTCTATCTTTTCTTCTTCTTTTTCCTCCTGATTGATATACATAGACGTAGATCATGGATATGCTTATGAATTTGGATAGTTGGAATAAGATTGAAAATTTTACATATTAAAATGTCTATTTTAAATTCAAATTAGTAGGCTCAGATATGAATTTTTGTGTTGTTTATTCAACAATTTTGATTGACTAGCTATATGAAAGTGTGAAAAATATCATTTGAAAAAGAAAAAAACATGAACTAATTAGGATATATGCTTCTCTTCAGGCACAACCACTCTTAAAAGATAGGAAGAAGTTTACACAAATGGCAGATCCATTGTTAAAATGCGAGTATCCTGTAAAAAGTTTATACCAAGCTTTAGCAGTGGCAGCAATGTGTCTCCAAGAAGAAGATGAAACTCGACCTTTAATCAGTGATGTAGTTACAGCAGTTGAATTTTTGGGAAGGAAGAGAGTAGAAGAGGATGAACCACAACCCACCAAAAAAATTACTTCTACTGAAGAAGAAGAAGAAGAAGAAGAAGATAGTAATGAAGACAAGCAATCTCATAAAGATCGAGACGACAACCACAATGATCAGAACCAAGATGAAGAAAAGAAGAATTGA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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