Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_32133	LG9	11629467	11630570	PREDICTED: probable disease resistance protein At1g58390	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	biological_process
Cellular Component	located in	nucleus
Molecular Function	enables	ADP binding, ADP binding

SNP	Position	Effect	Amino acid change
A/T	11629571	missense_variant	p.Glu35Asp
C/T	11629593	missense_variant	p.His43Tyr
A/C	11629596	missense_variant	p.Lys44Gln
A/C	11629644	missense_variant	p.Lys60Gln
C/G	11629694	synonymous_variant	p.Ser76Ser
G/A	11629744	missense_variant	p.Arg93Lys
G/T	11629747	missense_variant	p.Ser94Ile
G/A	11629759	missense_variant	p.Ser98Asn
A/T	11629853	synonymous_variant	p.Ala129Ala
G/A	11629896	missense_variant	p.Ala144Thr
C/A	11629928	synonymous_variant	p.Ala154Ala
T/C	11629934	synonymous_variant	p.Gly156Gly
G/A	11629956	missense_variant	p.Gly164Arg
G/A	11629961	synonymous_variant	p.Lys165Lys
T/C	11630119	missense_variant	p.Leu218Ser

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_32133.1

MASDTAEILKENFLEFFKDSESLNLSPTISLLLKEIEAEFSEHKGFWSPPPVESLRDLYKLDHAIAECRANKKTFSMFSRFDPVERANESVLRSIKTSLHDVRNSKNNINEYSTFPLFSSCRYPTGNDAPDLSVFDGEMEKIVARLESNNGFKAIGVHGMCGTGKTTLAKMVLRDSRVKDKYKKPIWVCLYDLQSKKEMDIRIVKEMLALLDDDPDLLAEEPEDKWLVKNLHDKLLDQKKYLIVLDAVWHCNDWFNNLFCVDQDGGDTSKELFSQALPKETGGAVIVTSRQKEVTTKLVREENLIHLKPWEDDKKLKNFVKKCLEKQDKITEENINFVAYHCHGIPFVAATISDWIAEQITKKSDSN*

CDS Sequence:
>Vu_32133.1

ATGGCCTCAGACACTGCTGAAATCCTTAAAGAAAACTTCTTGGAATTTTTCAAAGATAGTGAGTCTTTAAACCTATCACCTACTATCTCTCTCCTATTGAAAGAAATAGAAGCAGAATTCTCAGAGCACAAAGGATTCTGGTCACCTCCACCTGTTGAGTCCCTACGTGATTTGTACAAACTGGATCATGCAATTGCCGAGTGTCGTGCAAACAAGAAAACCTTCTCCATGTTCTCACGTTTTGATCCAGTGGAACGTGCCAACGAGAGCGTGTTGAGAAGTATCAAGACGAGTCTCCATGACGTGAGGAACTCCAAAAATAATATTAATGAATACTCAACCTTCCCCTTGTTCTCTTCATGCAGGTACCCCACAGGAAATGATGCACCAGACCTTTCAGTATTCGATGGAGAAATGGAAAAGATTGTGGCACGGCTTGAATCCAATAATGGGTTCAAGGCCATTGGTGTTCATGGAATGTGTGGCACGGGAAAGACCACTCTTGCCAAAATGGTTCTGAGAGATTCACGAGTCAAAGACAAGTACAAGAAGCCCATATGGGTGTGTTTGTACGACTTGCAATCAAAAAAAGAAATGGATATTAGGATTGTTAAGGAGATGTTGGCACTTTTGGATGATGATCCTGATCTATTGGCGGAGGAACCTGAAGATAAGTGGCTGGTGAAAAATCTTCATGATAAACTCTTGGATCAGAAGAAGTACTTGATTGTGTTGGATGCTGTGTGGCATTGCAACGATTGGTTCAATAATTTGTTCTGTGTTGATCAAGATGGTGGTGATACGAGCAAAGAACTCTTTTCCCAAGCCTTGCCCAAAGAAACTGGTGGTGCTGTCATTGTCACCAGCAGACAAAAGGAAGTGACTACTAAATTGGTGCGTGAAGAGAATTTGATTCATCTTAAGCCTTGGGAGGATGATAAAAAATTGAAGAACTTTGTGAAGAAGTGTTTGGAAAAACAAGATAAAATCACTGAGGAAAACATTAACTTTGTTGCTTATCATTGTCATGGTATTCCTTTTGTTGCTGCAACCATCTCAGATTGGATAGCTGAGCAGATCACCAAAAAGTCAGATTCTAATTGA

Promoter Sequence:
>Vu_32133::LG9:11627467-11629467(+)

CAATTGCTAAGAGTAGAAAGATTGCTTGGATTTCTCTCAAGGTTTGACATATGCTAAAGTCTGACTTTGTTATAATTGTTTTATAACAAATGTTATTCACTAACTATTATCAACTGTGATGATATATTGTAGTGTAACAGACAAAATGGGTCATATGAGTGTGGATACTATGTAATGTATTGGATGACCCATATTGTTCGTTCTCACATCACAAGAAGCTGGGAAACGGTAATATTTAACTTTAACAAATTTTGATTTTTTAACAAATGTTGAATTCATATACACTAATTAAAATGAATTGTCTTTTGCAGAGATTCAAGACTACTACACCAGTTCCTGAGAAGTCACTACTATTCATTAGGAACGCTGCTGCGAAGTATATAGTTAGATTATACAATAGCTCTTAGATTTAGATTTAAACAATGCATTTGATTAGATAGAATTTTCTTAGACTCTCTACTTTATTTGATGTTGAAATACATTTGAACATGTGTTTGTTATGTTGAAATTGAATTTCTGTAAATGTTTTTATATGCAGGTCTGTTTTTGTGGTAATGGATATCACAAAAACAGACCTGCAATTTTAAAAAACTGCAGGGGAATATGCCGCGGTTCTAACCACAACCGCGGCATATAGTGCTTCGTTTTTTTTTACAAACGAGACATATGGCCGCGGTTTTGACACTAACCGCGGCATATTCGTCGGCCTATATGCCGCGGTTCAACCGCGGCATATAGTGCATTTTTTAATTTTTTTTTAAATTTTTTTTAGGGTTTAGGCAGCGGTTCCCTAGACAACCGCGGCATATTCCGCAGCCTATATACCGCGGTTCGAACCGCGGTATAAAGTGTCTGACTTACTACCGCGGCTGAATATGCCGCGGTTCAAGAACCGCGACGTATAGTGAAAATGAACCGCGGTAAAAGCCCTTCGCTGCACTAGTGCGTTTATTTCTATTTAACGGAAGGGACTAATTTGACTCAAAATTTTAAAAGTGATGATCCATTTCAAACACTTTTAAAACGAGAATTTGTCAACGAAACTAAGGACAAAATTGGCTATTAAACCTTAAAATAAACATTTTAAAATTTCTAAAAACATTTTATTGCAACTTCAACCACCATGAAATCCCCGTTTCCTTCTTTTGCATGGTTTCCATTGCGATGGCTCCCAATTATAAAATTTTGTTATACAAAATCAATATCTAAATCTAGACCATAAAGAAAAAGATTTAAGTCTTTAATAATATGATAATTTCAAACTAAAAATTTAGTTTTTAATTTTATTATTATTTGAATTGACTAAAAATTAGTCACTAAAATAGATTAAAATGACTAAAAATTAATTTCCATTTATATCACAATGAGGGATTAAAAAATTATTTCTAAATAAAAAAATACTTTTTAATGATCACTAATTATTAAAAATAAATTTCTAATATATTATAAACTTTTATTAATAATAAAAATGATTTTAGATATTAGTAATTTTTAGTTTATAAAATAATTTTTAATTCAATTACTATAATATTAATCTCTAAAGTAATATATATTTAATTAATTTCTTATAGTGTTACAAACAGTTTGCTAAAATAATATTACACGGTAAATTAATTTATCTAAAGTAATATGTGTTTAACAATATTACAATATTGCTATAGTAACATTTTTATTAAATATATTTATGAAAATGCTCCTAAAACTAATAAATCCTGTAGTCAGAATCTTTCTATTGCATGTTTCAGTTTGGTTTGGTTTTCAACCGTGGAAATGGAATCATTCATTTCCCTCGAAGAGAAAAGATGAAATATCTGTTACATCGTTCCAAGAAAAGAATATAATTCCAAGCTTATAGTTTTGGTGATAGATATGAGACAAACAAACAATACTATTGCCTTCTTCATTTCAACACCACAAGTTGGGAAACAAAAGTGAAAAAAAACATTCATCATTTTCTTACTCTCAATCATCATTACCATCCTAGCTCCCTCCTTCAATCA

Gene Sequence:

>Vu_32133(+)