Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_32019	LG9	8878206	8878463	LRR receptor-like serine/threonine-protein kinase HSL2	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
T/C	8878264	missense_variant	p.Leu20Pro
A/G	8878288	missense_variant	p.Asn28Ser
C/T	8878289	synonymous_variant	p.Asn28Asn
C/T	8878295	synonymous_variant	p.Phe30Phe
C/T	8878317	synonymous_variant	p.Leu38Leu
G/A	8878332	missense_variant	p.Asp43Asn
G/T,*	8878355	synonymous_variant	p.Arg50Arg
A/G	8878437	missense_variant	p.Ser78Gly
C/A	8878453	missense_variant	p.Pro83Gln

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_32019.1

MTTFLGGGGIPEILASNPNLHHLKLFNNSFTGKLPQDLGQNSDIQDHFERLITSANRFSETLPEQYDLTNLQPLAFASGEGPPHR*

CDS Sequence:
>Vu_32019.1

ATGACAACCTTCTTGGGGGGAGGGGGAATTCCTGAAATTTTAGCTTCAAATCCCAACCTGCATCACCTGAAACTCTTCAACAACAGCTTCACCGGGAAACTTCCACAAGATCTGGGACAAAACTCAGACATACAAGATCATTTCGAGCGGCTGATTACGTCCGCGAATCGCTTCTCAGAAACGCTCCCTGAGCAATACGATTTGACAAACCTCCAACCGCTTGCATTTGCTAGCGGAGAAGGCCCACCGCACCGTTGA

Promoter Sequence:
>Vu_32019::LG9:8876206-8878206(+)

AGATTTGGTTGCATGTAAATTTGGGAGAGACAAATTAAGATTCTCAGAAAAGTAAGCAACAATAAAGCCAAGGCTAAAAAAGATTGAGATTCCAAAGAGACATTAATAGGGTCACAGAAGTTTTTGAAAGACCAATACAATTGCAAACAAGTTATGGACCACCAAGTTGGGCATTCTCTCAAACATGAACAGGGCTAGAATGAATATTCTGAAATCCCAAAAGAGAGAGGCAAAGAGAATAGCATTACATTCTAGCCTGGAGCAGACCAGCAGTGGGAGCATAGCCATGAAACTTGTGAGAGTGAAGAGAGTCAGCAACAGCTTCTTCAACAACCTTAGGTGTGTGGAATAATGTGGTGAGTGTTGGGTCACCCATACCCAGAGAAATAACTCTCTTGCTTCCACCATCCAAATTCTCATCAATGTTTTCCATTAGAAGGCTGAGAATGCCCTTAATGGTGATGGTGGAAGTTGCTCTGGTTTCATGATGCTGGTGGTGGATGATGTTGCTGCAGTTGTTGTCCATGCTCTGAAGCCTCTGCCTTGTTCGGATTTGTGAAGGCCGAGTGGAGAATTCTGAGTTTAGTTTCCCACACACCACACGTTATGTGGTTTCTCTGAGCATGGAAACAAAGGTTTTGGCGGTTTATATAGTTGCGTGACAGTCGTACAAACCTTGTTACGTGTCAAAATATACCTTAATGGTTTTCTTTAGCAAATTATGTGGAAGAAACCTAATCATCTTGGCTAACATGTCAACTTGACATCTCACATTTACTATCGCTTTATTGTTTTGGTACGGTCACAAGAAGGAATAAAAAGATACTTAATTTCTAATTTGTTTCTTTAATTTCATTTGAATTTAAAAAATAATAATAATTATCGATTTTTTCAATTTAATCGTTTAATATTTTAAAAGTATTAAATTTAGTCTTTTGTTTTTCAAAAATATTAAATTTAATTTTTTAGATTTTTATAATCATGAAATTTAATCCTTTAGTTTTGGTTAAACTCCTTTAGTTGTCTCTATTTATGTAGAATTTTCGGTTCGATCCCCGTTCTTTTAAAATTCTCAATTGAGTCCTGCTAATTTGAATCAATTTGATCCTTGCCGTTAAATTTGGTTTAACAGGGTTAAGTTTTTTATGAGGTTGGAAGTTGACGTGGCATGTTTTTTTAAACCTGACATTCACATAACTCTACAGGAAATTTAAAAATATTTTAACATTTTGATTAAAAAATTAAAAAAAAAAAGTCATCTTCCATTACAGTCAAGCACCATCCAGAACCAGAGAACCCAATTGCATAGAACCACCATCATCTTCTTCGTTCACCATCAACCTGCAATCAAGTAACCACAAAATCAAAATCGTGACTCTGCCATGTTCACTTTAGTTCATCTCCTTCCATCCACACCATGAAGGCAAATCGGCCAACGTAACCAGTGCTCAAGCTCTTCGCACGCAACCGAACTCATCATCATCTATTTTCTTCTCCATTAAACCATTTGAAACCTGTAAAGAGAAAACAAAATCACAAATCTGAAAACCCCTAAATTAGTCACGAACCCTAAATCACGCTAGACATAAAACGCGAGACTTTCAAATCTCCATAAAACCAATTTCAATTCAAAGCCTACAATTGAAACCCCTAGAGAAGGTAGAAACCAAAACCACTGACAGCGTTAGGGTGAACCAGTCGGAGATTGAGATTTGGCGCCGCCTAAAGCTTCGCCGGCTCCTTCACCCACTATCGGTAACCTCACCTCACTCAAAAACTTGGACTTATCAAAAAATGGTTTGTCCGGCAATATCCAAACAACATTTCAGGTCTGAAAAACATTGAACAAATTGAACTATTTGAAAATCAGCTTTCCGGTGAATTACTTTAAGGTTTAGGAAACCTCAGTAGTTTAATTCTCTTGGTCCTCTCTCAGAACACTCTCACAGGGAACTACCACATGCAATAGCCTCTTTACATCTCTATTCTATCAACCTAAA

Gene Sequence:

>Vu_32019(+)