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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_31733 LG9 2575129 2576166 PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   biological_process
Cellular Component   located in   nucleus
SNP Position Effect Amino acid change
A/G 2575246 intron_variant
T/G 2575273 intron_variant
A/T 2575288 intron_variant
G/A 2575332 synonymous_variant p.Val124Val
T/A 2575489 intron_variant
G/T 2575493 intron_variant
T/A 2575523 intron_variant
A/G 2575729 intron_variant
T/C 2575732 intron_variant
G/A 2575882 synonymous_variant p.Ile95Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_31733.1
MSEEHRNHACVLCRYQHKRHDGSCQFGQYFPSNRGMDFENACRLFGLANLLRLMRCAEPSQRQVMANSILTEANMYGNDPIHGALGQVLNLNNQIQSVQRELDFVNTMLAQCSLQSTSHVDDVVAGSSHPGQSSTVAPREKEGGAQEKDAEYKRKNKKDH*


CDS Sequence:
>Vu_31733.1
ATGAGTGAAGAACATAGAAACCATGCATGTGTGTTGTGTAGGTATCAACATAAACGTCACGATGGTAGCTGTCAATTTGGTCAGTATTTTCCGAGTAATAGAGGAATGGATTTTGAGAATGCTTGCAGGCTTTTTGGTTTGGCCAATTTGCTTAGATTGATGCGTTGTGCTGAACCATCTCAAAGACAAGTTATGGCTAATTCCATTCTAACTGAGGCTAACATGTATGGCAATGATCCCATTCATGGTGCCCTAGGTCAAGTTCTTAATTTGAACAATCAAATCCAATCTGTTCAAAGAGAATTAGACTTTGTAAACACTATGCTTGCTCAATGCTCACTTCAATCAACTTCACATGTGGATGATGTTGTCGCTGGTTCTTCTCACCCAGGACAATCAAGTACTGTTGCACCTCGTGAGAAAGAGGGTGGGGCTCAAGAGAAAGATGCCGAGTATAAGAGAAAGAATAAGAAAGATCATTGA


Promoter Sequence:
>Vu_31733::LG9:2576166-2578166(-)
AATCGATTGCAAACGGTTGTTTTGCCAAACAATTAAAGTTCAACATTAGTGCTTGTGGTTTTTCCATCCAAAAACATGTGTCATGCATTCATGTATAAAATCACATATATAACATAGTGAAATGCAATGAACAACACAACAACAACACAATCATGTTCTCATATACGCATATAACATGTAAGCATAGAACATGTAACACATAAAACACATCTGTTATTAATTATGTGTTGTTATCATCAAAAACTCAGATATTACTGAGATTATGGGTTTAGCTAAACTAGTGTTCCTCCTATCAACAATCTCAACACCCCCTTCAGCTCTAATTTCTCTATGTGTGTTGTAGCGTTAGGTGTGATTCTAGTGTCGTCCAATGCGAGTATTTGACTCAAAATGGTTTTTTTTTGTCTAATCATGCTTTTTTAAAATCCAACTTGTTTTTCTCCATTAGATTGTTTTTTTATTCATTTATTTCACGCACTAGAATATATATATTAAAGATAAAACAAGCACAAAATAACTAACGCTACAAACAAAATAAACTTGTGGATTAAACAAAATAAAAACTATAGAAGAGTTTATTTATTCACAAAACTTAACACAAATAAAAAGTAAAAATAAACTATATAAACTATTAATATAAATTAGGATGAAAAGTTGAAATGGAGAGAAATTCATTTAATTGGAGTTACACTTTTCATAAGAGAAATTATTATGTGCATCTATGGTCCGTTAAATTAATTAAGTTGTTAATATAAAACATTAAATGTTGATATTGAGTGTAATTAATTTCATTTACTCATGCCTCCACTTATCTTATTGTCATATGTAATTAACCATTATAATAATTACCTTCTAAATTTTATCCTTAAATATCAATTCCTTTACTACTTCATAAGGAAACTTAGATCAAGATCAATAATATCAAGTACTTAACTGAGTTAAGCTAATTTCTTTAAATATTCAGTTAAATAGGTCATATATAGCAAAATGTAGAAGTTTCAAGAAATCTATATTACATGTTGGAATTTTTATTTTTCAACCAAGCGACCTTTAAACATTAATATTAAACCATTATAAATTAAATTTTGGTATCACTCATTCACGAAGAAATTTCTTGATGAGTTCTTCTAGTTATATATTGATCATCTTATTCAGTTTTATTTAATGTAAAATTTTCAAGTCATTAAAGATATCTTCCTTAAGTGAGTTCTTTTTACATTTGGTATCTCACTCTCAAACAAAAACATTTTTCTTGTTAATCATGAATATTTTAATGATGATAATTTTTTTTATCATCGCGTGTTTTCGTGTTTAAGTTGATACTAAGACAATTTTAGTTTTATACCACTTTTGAGTTTTCTAAGAATAGACATTAAAAAAAATGACATCAACGAGTTGCAAATAGACATATATGAAAAACTATGATATTCCTTTTAACTTAAACTTGTAACGCAATCAATTTTAAAAATTTTCCACTCATATATACTTATATTTTGTCCATTCAATGTGAAAATTTCAAATCAATTTACAATTTAAATTTCTATAATTATCTTTTTGCATACTTTTTTAATAAAATAAAAACTCTTAACTGTAGTAATCTTGATATATTTGCAAACAATAGTTTGCGAATTCCAAGATAGTAAACATTTAATTATCTTTGAAAAAAGTATATTTAAGTATTAAATAAATTATAACATTAAAAAGAAGTCTTTGCATTTTGTAACGTGGGATGCATATACAATATTTTATTTAATAAGTTCTAAAAATAATAAATACGGTTTGACCAAAATCTTAAAATCATCAAACCAAGGGTTCATCTATAGAATATTTTATTTAATAAATCGTCACACATACAGAAAATAATAAACTGAGTTTGACCAAAGACCTTTGCTGGTGTGTATAAATTGGGTATGTTTGAGGTTTTGTATTCATAAGGAATGAAAAAGGATAGCAGAAAGAACATTGATTGATATCCATATCTGCATCTTTCTGCAAAAAGA


Gene Sequence:
>Vu_31733(-)
ATGAGTGAAGAACATAGAAACCATGCATGTGTGTTGTGTAGGTATCAACATAAACGTCACGATGGTAGCTGTCAATTTGGTCAGTATTTTCCGAGTAATAGAGGAATGGATTTTGAGAATGCTTGCAGGCTTTTTGGTTTGGCCAATTTGCTTAGATTGATGCGTTGTGCTGAACCATCTCAAAGACAAGTTATGGCTAATTCCATTCTAACTGAGGCTAACATGTATGGCAATGATCCCATTCATGGTGCCCTAGGTCAAGTTCTTAATTTGAACAATCAAATCCAATCTGTTCAAAGAGAATTAGACTTTGTAAACACTATGCTTGCTCAATGCTCACTTCAATCAACTTCACATGTGGTAACACTCTGCTTGCCTTTTGGGTTTATATATTTATTCTTCCTTCAAAAATATAATAATTTTAATGTTTTAAAATATATTAAAAATTGTGTTTTGTTTATAAACTAAATCATGTTTCTATTTCGATTTTTTTATTTATGAAAGTTATATAAAATATGTATGTGAAATGTTTTGATAAATGGAATTTTTCAATACAATTAAACAATGCATTTTACATGACTTTTATAAAGTATAAAAACAAAATAGATATATAATTTAGTTTATAATTGAAACATGATTTTTCAAGAGTGTGAAAATACAAAACATATTTAATCTTAATTTTTATTAATATATTGAAATTAATATACTTTGGAAACACAATAGATAATTATCACAACAAAAAATCCAAAGAGAACATAAACTTATTAATTCTTATTCAACCTCAACTTTCTTCTCTGCATGATGTTATGTGAATCTCTTGTAGGATGATGTTGTCGCTGGTTCTTCTCACCCAGGACAATCAAGGTATTGTTTTCTTATGTTTTTTTGGTATTAATTTTCTTTTGTTTTCCTTTTTTTATTTTAATGTATAATATATATATTTTTCAATTATGCAGTACTGTTGCACCTCGTGAGAAAGAGGGTGGGGCTCAAGAGAAAGATGCCGAGTATAAGAGAAAGAATAAGAAAGATCATTGA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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