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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_31632 LG9 72454 74223 PREDICTED: serine/threonine-protein kinase-like protein At3g51990
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A 72520 missense_variant p.Ser23Thr
G/A 72532 missense_variant p.Gly27Arg
G/A 72708 synonymous_variant p.Ser85Ser
T/C 73446 synonymous_variant p.Val331Val
C/T 73462 synonymous_variant p.Leu337Leu
T/C 73481 missense_variant p.Leu343Pro
G/A 73540 missense_variant p.Val363Ile
T/C 73953 intron_variant
A/G 74156 intron_variant
G/A 74216 missense_variant&splice_region_variant p.Ala396Thr
C/T 74219 missense_variant p.His397Tyr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_31632.1
MGYLYLSCRAESAVSTSDSVASSKATGEKDKEKERSGIKIQEFQYRDLEAATNGFSDRKLLGKGSHGYVYKAVVRGRPVAVKRPSRPHHHGVVPRPVSSSAPLEITNEVDNEIDILSKIQSPRLVNLVGFTNDSRDRLLVVEFMSNGTLYDVLHSSPRPPNWGRRIRLALQTAKAIDTLHSSTPPVIHRDIKSANVLIDRSYNARLGDFGLALRGHVDDYRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDITYSPPSIVDWAIPLIKKGKLLAVYDPRIAPPKDPVVRKQLAVIAAKCVRSCRERRPSMNEVVTWLCGLCKLVPLHSWNGFNNPCMMVETVGRPVEARNGEFNSRLAGVEEGNIEALDGRLSKSAMRSS*


CDS Sequence:
>Vu_31632.1
ATGGGGTATCTATACCTTTCTTGCAGAGCCGAATCCGCAGTTTCAACTTCCGATTCGGTGGCTTCTTCCAAAGCTACCGGAGAGAAAGATAAAGAGAAGGAGAGAAGCGGCATCAAGATCCAGGAGTTTCAGTACAGGGACCTCGAGGCTGCTACCAATGGCTTCTCCGACCGCAAGCTTCTCGGCAAAGGGAGTCACGGTTATGTCTACAAGGCGGTGGTTCGGGGCCGTCCCGTGGCGGTGAAGCGGCCGTCGCGACCGCATCATCACGGGGTTGTTCCTCGGCCGGTGTCTTCTTCCGCGCCTCTGGAGATCACGAACGAGGTGGACAATGAGATCGACATCTTGTCGAAAATCCAGAGCCCCAGGTTGGTGAATTTGGTGGGTTTCACGAACGATTCAAGAGACAGGCTTTTGGTGGTGGAGTTCATGAGCAATGGCACCCTTTACGATGTTCTTCATTCCTCTCCGAGGCCTCCCAATTGGGGTAGGAGGATTCGTTTGGCTCTGCAAACTGCTAAAGCCATTGACACGCTTCACTCCTCGACCCCTCCTGTGATTCACCGTGACATAAAGTCTGCGAACGTTCTCATCGACCGCAGCTACAATGCGAGATTGGGGGATTTTGGTTTGGCTTTGAGAGGCCATGTTGATGACTACAGACTCAGGTCCACTCCCCCTGCAGGCACCATGGGCTATCTTGACCCTTGTTATGTAACTCCTGATAATCTGAGCACCAAAACTGATGTTTTCAGCTTTGGGATTTTGCTGCTGGAGATTATAAGCGGAAGGAAGGCCATTGACATCACTTATTCACCACCTTCTATCGTGGATTGGGCTATTCCTCTCATCAAGAAAGGGAAGCTTTTGGCTGTTTATGATCCTAGAATTGCACCTCCGAAGGATCCGGTTGTGAGGAAGCAGTTGGCCGTGATTGCTGCCAAGTGTGTGAGGTCTTGCAGGGAGAGGAGACCTTCCATGAATGAGGTTGTTACTTGGCTCTGTGGGCTGTGTAAACTGGTGCCTCTTCATTCTTGGAATGGTTTTAACAACCCTTGCATGATGGTTGAGACTGTGGGGCGCCCGGTTGAAGCAAGAAATGGTGAATTCAATTCTAGGCTGGCAGGTGTGGAAGAGGGAAATATTGAAGCTTTGGATGGAAGACTTTCCAAGTCTGCAATGAGGAGCTCATGA


Promoter Sequence:
>Vu_31632::LG9:70454-72454(+)
AACAACCTAATAAAAATAATATAATCAACAAACAATAAATTTTGTTAGGATCGACTCTAAATCATGATTCTGATGTTAGAAGTGAACTTCAAATCTAATTTAATTATATAAGATTAATTTGTAAAGTGGAATTTACATTTTATATATATATATATATATATATATATATATATATATATATTCTAAATTAGATCTACCATTAATTAATGTGAGATTTCTAACATAAAGTCGTGTAAAATACATTTTATGTGTAGTTATGCCAACTACACATACAAAATTATATTATAATTCATTGTTGAACTCTATCTTAAAATAAAGATAATTTTTGTAATTTTTGTTTAAAAAAAATATTTTAAATGTATATAATTTTGTTTGAAGAAAAGGAATTTTTTTAAATGATTTAGAAACGGAAAACAATTTAATCTATAATTATTTAACCTAAAAATTTTAAAAATTGGAATGAAAGATAATGACTCTGAGACTTTGTGAGATTGTCTTATATTATCTAAAAACAAGTGAATCATGTAGTGTTAAAGAGATTTTATTGCCATCCTACTTCGTAGTAGAGATATTCTATTGATTTGGTCTAAGTTTTTCTTCTTATTCTTGCATAAAAGAGGTTGTGTAAGTTAAAATTAATTTCTTATTCTCTACTTATTATTTTCTTGATCTCATTTTAAGTTATATAGATGAAGAAAAAATTTTCAATTGCGAACATTTTCTAATACTCTCGCTACATTCAATTGTAACATCTTTAAATTATAAATTCCACCCAAATGTTTAAATTAAGGTTGAAGTAATTCATAAGAAGGACAGCTTGTCATTAGATTTAAGAAACATAGTTGGTTGGTGAGAATTAAGATATATATATGATTAAATTGGTTTTTATTTATAAATTTAAATTGCGAAATTTAAATTGGTTTTTATTTATAAATTTATGATTAACACGTTTGAGAAATCAATAAATTTGTCTGAAGGTGACGCTGGGTCATATATTATGATTTTGAGTAAATTTTTAACAGACGTTAGACATCATATCACAGATAAATTAATAAACTAATTAATGTTTTTAAGAAACAATTTATTTGGTGTTATTAAGTTATAGATTTCATATTAAAATATACGAGTTTCTACAAGTGTTAGAAACAAGTAGGTTATTAAATAAAAGAAACCGATGTCTTAATAAATAAGTAAACAAAACGTTTGAAAATAACGTGTTCAAGAATTATTGATAATTATTTTTTCTACGTTATCAGCAAAAAATAAATTAAATCTCAGTAAATTGAATATGTTTTTTCCTATTGTATTGGCTGGAAAATGAAAGAAAAAATAAAAAAAGTTGAAGTACATCACATGTGAAGGCAACCCGTGAGTTTTCTTAATTGGTATGACCCAATTTAAGGGCACACCAAACCTTGATGAACAAACAACGATACAAACACCAAAATCATCTCATTTTCCTTTCTGTACTTTCTGGAAGAGAAACGTGAGATGTACGTTAATTTTGTACCATATTTTATCTGTATAAAAAACTATATGTTAAAATAAATAACCATATTATTATTATTTTATGAATAAATAAATGATGGACCTTGAGATTCTTGCAAGGGGTGGGTGGTGGGTCCCTACTTTCTCTTTTTCTCTGTCTAATTTTTAGAGAGAGACACATTCACATCTTCCAAGATACACACAGAGCATTTAATTTTAATAATAAATGATGAACGTTTGCACATTTTTGCAATCCCATAATAAACACAACAGACATAAACAAACGTATTCTGATGCTACTATTGATTTTTGGAACACTCAGGAAGACATTTATCTGTTGAGCTGAATCTTTTCTCTGCTTTTTTGTTGGGTTTGGTTTCTTCTATCTATCTATCCATCATCTTCTTCTGGTTCATTTCCATCTCCATCTCCATCTCCACTCCCACTTCACTCCCTTTGGTTCCTTCTTCGGTTCAGATATTCCAAAAGGATAGACACAAACGCAATTCATA


Gene Sequence:
>Vu_31632(+)
ATGGGGTATCTATACCTTTCTTGCAGAGCCGAATCCGCAGTTTCAACTTCCGATTCGGTGGCTTCTTCCAAAGCTACCGGAGAGAAAGATAAAGAGAAGGAGAGAAGCGGCATCAAGATCCAGGAGTTTCAGTACAGGGACCTCGAGGCTGCTACCAATGGCTTCTCCGACCGCAAGCTTCTCGGCAAAGGGAGTCACGGTTATGTCTACAAGGCGGTGGTTCGGGGCCGTCCCGTGGCGGTGAAGCGGCCGTCGCGACCGCATCATCACGGGGTTGTTCCTCGGCCGGTGTCTTCTTCCGCGCCTCTGGAGATCACGAACGAGGTGGACAATGAGATCGACATCTTGTCGAAAATCCAGAGCCCCAGGTTGGTGAATTTGGTGGGTTTCACGAACGATTCAAGAGACAGGCTTTTGGTGGTGGAGTTCATGAGCAATGGCACCCTTTACGATGTTCTTCATTCCTCTCCGAGGCCTCCCAATTGGGGTAGGAGGATTCGTTTGGCTCTGCAAACTGCTAAAGCCATTGACACGCTTCACTCCTCGACCCCTCCTGTGATTCACCGTGACATAAAGTCTGCGAACGTTCTCATCGACCGCAGCTACAATGCGAGATTGGGGGATTTTGGTTTGGCTTTGAGAGGCCATGTTGATGACTACAGACTCAGGTCCACTCCCCCTGCAGGCACCATGGGCTATCTTGACCCTTGTTATGTAACTCCTGATAATCTGAGCACCAAAACTGATGTTTTCAGCTTTGGGATTTTGCTGCTGGAGATTATAAGCGGAAGGAAGGCCATTGACATCACTTATTCACCACCTTCTATCGTGGATTGGGCTATTCCTCTCATCAAGAAAGGGAAGCTTTTGGCTGTTTATGATCCTAGAATTGCACCTCCGAAGGATCCGGTTGTGAGGAAGCAGTTGGCCGTGATTGCTGCCAAGTGTGTGAGGTCTTGCAGGGAGAGGAGACCTTCCATGAATGAGGTTGTTACTTGGCTCTGTGGGCTGTGTAAACTGGTGCCTCTTCATTCTTGGAATGGTTTTAACAACCCTTGCATGATGGTTGAGACTGTGGGGCGCCCGGTTGAAGCAAGAAATGGTGAATTCAATTCTAGGCTGGCAGGTGTGGAAGAGGGAAATATTGAAGCTTTGGATGGAAGACTTTCCAAGTCTGCAATGAGGTATTCCAGGAGGGTGTATTCTGATTTGGGGTTCAGCAGCAACTTGATGGACTTGATGGCTACCACTGAGGAGCCTGAATTTCTGAGAGATGCTGATGGGATGGATCATAGTTCTAAATCTGCTGAACAAGTTTCTAGCTCCAGGTTTGGCAGTGGAAGGTATTCCATAAGAGGGAGGAACCTATACAGGCCATGTGGCAGTGACAAGGACGCCTTTGGCTTCAGTAAAGGTCGGATTGTAGGTCAGACTGAGACCACTTCAAAACAGGACGAGGTTTCTGGTTCAAATTCGAAGAATTTGAATTCTCTGGTTGCTGAGGTTGTCTAGTTAATTAACTGCTGAAACATTTTATTGGATGATGATGATGATGATGCCAGGCTTGTGAGCTTTTCTTGCTTGCAAAATTGTGTAGATTTGTTGTTAGTTCATTATTTGTGGATTTCAGAAATGATCTCTTCATTTTTAGTAGGTTTTTGGGTTGAAGGGCGCATTACTGATGTCCCCTTAACGTTGTTCAAAAAGCTTTTGTTTCCTCCTCATAAACAAATGCAAAAGCCACTGTATGAATGATTCAGGAGCTCATGA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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