Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_31579 LG8 48618729 48622806 PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03400 DNA repair and recombination proteins [BR:ko03400]
SNP Position Effect Amino acid change
T/C 48618794 3_prime_UTR_variant
G/T 48618800 3_prime_UTR_variant
G/T 48619272 synonymous_variant p.Thr529Thr
T/C 48619880 downstream_gene_variant
A/T 48619881 downstream_gene_variant
G/T 48619897 downstream_gene_variant
T/A 48620208 upstream_gene_variant
A/T 48620216 upstream_gene_variant
T/A 48620291 upstream_gene_variant
C/G 48620477 upstream_gene_variant
C/A 48620483 upstream_gene_variant
T/C 48620609 missense_variant p.Gln349Arg
G/T 48620610 missense_variant p.Gln349Lys
T/C 48620819 upstream_gene_variant
G/A 48620843 upstream_gene_variant
C/A 48620879 splice_region_variant&intron_variant
G/A 48621116 upstream_gene_variant
G/A 48621233 upstream_gene_variant
T/A 48621270 upstream_gene_variant
T/G 48621364 upstream_gene_variant
T/A 48621399 upstream_gene_variant
T/C 48621495 upstream_gene_variant
G/A 48621582 upstream_gene_variant
T/C 48621736 upstream_gene_variant
C/T 48622089 missense_variant p.Glu240Lys
A/G,* 48622117 synonymous_variant p.Cys230Cys
C/G 48622167 missense_variant p.Val214Leu
A/G 48622270 synonymous_variant p.Val179Val
C/T 48622396 synonymous_variant p.Glu137Glu
T/A 48622401 stop_gained p.Lys136*
A/G 48622409 missense_variant p.Leu133Pro
G/A 48622438 synonymous_variant p.Asp123Asp
A/G 48622528 synonymous_variant p.Ile93Ile
G/A 48622738 synonymous_variant p.Asn23Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_31579.1
MQEENNAAGPLLQKFKGVVPQQNGNWGAQIYANHQRIWLGTFKSEREAAMAYDSASIKLRNGDSHRNFPWNDQTVQEPQFQSHYSTETMLSMIRDGTYPSRFATFLSTRQQGGVLKHVTLKDDGKEQLCCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPNVCDGGAESHEENVSADVEVAFYDRLMRQWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIAFFMCEPVDCRKGGEGEAFGLIDVIYSSDEDTKDEHTVKDLNAEKEKRDDLMNTESEKFHNILEEFDKLHDQVEKPREQVADAEALLDLTRTLVGSVRSLANEGVTPSQFVSSLLIRYGQGQGQDSIDWQKLGIAVSPIFLSVHGSTTMLGPMDNEIKKRRIGVRKQRDARPVATTRPEQLDEAGAVEKTDTDKNMATMFNILRRTKRVRLENLIINRKSFAQTVENLFSLSFLVKDGRAEISLDENRLHYVSPKNAPAANLVSSKEVSYSHFVFRYDYQDWKLMKDVVPEGEELMPNRVQCATAAYPQERMGVDDSQPALALTPIRKLSRNRGLVVQEESVVEETPECDEENVSREAAIRRCKRKLDEEIAH*


CDS Sequence:
>Vu_31579.1
ATGCAAGAAGAGAATAACGCAGCAGGGCCGTTGCTTCAGAAGTTCAAAGGCGTTGTGCCTCAACAAAACGGAAACTGGGGTGCCCAGATATATGCAAACCACCAGAGAATCTGGTTGGGGACTTTCAAATCGGAAAGAGAGGCTGCAATGGCTTATGACAGCGCCAGCATAAAACTCAGAAACGGAGACAGCCACAGAAACTTTCCATGGAACGATCAAACGGTGCAAGAGCCTCAGTTTCAAAGCCATTACAGCACAGAAACAATGCTGAGCATGATTAGAGATGGCACCTACCCTTCACGCTTTGCCACATTTCTCAGCACTCGTCAACAAGGTGGTGTTCTCAAGCACGTAACTTTGAAGGATGACGGCAAGGAGCAGCTTTGCTGCACCCAGCTTTTTCAGAAGGAGTTGACACCGAGTGATGTGGGGAAGCTCAACAGGCTTGTCATCCCGAAAAAGCATGCAGTCACATATTTTCCTAACGTGTGTGACGGCGGCGCAGAATCGCATGAAGAAAATGTGAGTGCTGACGTTGAGGTTGCGTTTTACGACAGGCTCATGAGACAGTGGAAATTTCGATACTGTTATTGGAAGAGCAGCCAAAGCTACGTGTTCACGAGAGGGTGGAATCGGTTTGTGAAGGACAAAAAACTGAAGGCTAAGGATACCATTGCGTTTTTCATGTGTGAACCTGTGGATTGCAGAAAAGGAGGAGAGGGAGAAGCTTTTGGATTGATCGATGTAATCTATAGTTCAGATGAAGACACCAAAGATGAACACACTGTAAAGGATTTGAATGCAGAAAAGGAGAAAAGAGATGATTTGATGAACACGGAGTCCGAGAAATTCCACAACATTTTGGAAGAGTTCGACAAGTTACACGACCAAGTTGAGAAGCCAAGAGAGCAGGTTGCAGATGCAGAGGCACTGTTGGATCTGACGCGCACTCTGGTAGGATCTGTTAGGAGTTTGGCGAACGAGGGTGTCACCCCTTCACAATTTGTTTCCTCTTTGCTCATACGCTATGGCCAAGGTCAAGGCCAAGATTCAATCGATTGGCAGAAACTTGGCATTGCGGTGTCCCCGATATTCCTCTCCGTTCACGGCTCTACTACCATGCTTGGACCTATGGACAACGAAATCAAGAAACGAAGAATCGGAGTGCGCAAACAACGTGATGCTCGCCCTGTCGCAACTACTAGACCTGAACAGCTTGATGAGGCTGGTGCGGTGGAGAAAACTGATACTGACAAAAACATGGCAACGATGTTTAACATCTTGAGGAGGACAAAACGTGTCCGACTTGAAAATTTAATTATCAACAGAAAGTCTTTTGCTCAGACCGTGGAAAATTTGTTTTCTCTGTCATTCCTTGTAAAAGATGGTCGTGCTGAGATCAGTCTCGATGAAAATCGTTTGCACTATGTTTCTCCTAAAAATGCTCCAGCTGCTAACTTGGTATCATCAAAAGAAGTTTCTTATAGTCATTTTGTATTCAGATATGATTACCAAGATTGGAAGCTTATGAAAGATGTAGTGCCGGAAGGGGAAGAGTTGATGCCAAATCGGGTTCAATGTGCTACCGCTGCTTACCCTCAGGAAAGGATGGGTGTGGACGATTCTCAACCTGCTTTGGCTTTAACACCTATCAGGAAGCTATCACGGAATCGAGGACTGGTTGTACAGGAGGAAAGTGTTGTAGAAGAAACTCCTGAATGTGATGAAGAAAATGTTTCCAGAGAAGCGGCTATTCGGAGGTGTAAGCGTAAACTTGATGAAGAAATAGCACATTAG


Promoter Sequence:
>Vu_31579::LG8:48622806-48624806(-)
TAACAGTGTATGTAGGGACCTGCCGTTTCTTTTCCACCTATAACACTGAATCTGACGTCTTTTCGTCCTTTTCAACTCTTTTATTTTCATTAATTTTCTCATACCTCACTTCCATTTCATTTTTCAATTATTCAAGCAGAAAATTTGGTTGAAAATCCAAGTATGAATCTAAGTTCCAGTTTGATGAAAACGAGAAAGTTGAATATGAGTAATTGAGATTTTAGATTGGAAGTGGTATCAATATCTAAAAAGGCCATCAAATATTGTTTTTCAAGTTCTCAATTATGTATTGCAAATTTCATTCATCAGCTCAACCGTTGACATAGTAAGCTATGTGTGTTTTTCTTATAATGAGATGTCAATCTACCTTGGTAAATTGCATGTCTGGTTTTGTGGTTCTGTTAAGAGTTGTTGACAGTTGATGAAATGGTGATTCCACTTTCAATATCTGTCCACAAGCTGATTAATTGCTTGAATTGGACTTACCTACAACATGCAGAGTTCCGAATCATGTTACGAAATGAAATCTCGTATTATCTTATTCATCATCTTTGTTAACCTGTGTGGTCATGTAAGTAACAGTTTAGTGAACTCGTCACCTACAATACAGAATGTAAAGTTGACATCACTTTGCTTGGTTTGAACACAAACCATTGTACTGAAGAAAAAAAATGCAAGGAAAAGAGTATGACAAATCAATAAAATCTGACATAATTGGTCTATAATTGAGTTTTTCAAATACACTGTGTAGAGTTGGATTGTGAACAGAGAAATATCAGTACTGCACTGCACACTCAAATTATTAGCAGCCATTTATATTGGTATGGCAAAATACAACTAAATTTACTCAGCCAAAAGCCTAGCTTTCAACAAAATAATAGCAACACACCAATTCAAGCATTTAACTGATGAAAATTATATATACACTGATTAGTTTATGTATAACCTTGTTTAAAAAAATGCATACTAGTTCCTTATTTTTATATTTGAAATGTGTATATGTATATAATATATATACACACAGTATTTTTAAAAACAATGAAATGAAGGAGTCACTTATAATTTCCTGAATACAAAAAATGAAAGTATAATATTAATACTAATTTTAGTGAGGTCACTGTGGCGTCTATTATTAGAAATAGACCAGAAGTGACCATTTCTAAAATAGCCGTCAAACTATTTTCATTTCTATACCAGAAAATAACATATTTTTTGAACTAACATAATAGAAAAAAAAAAGGAAAATGTCAAACTCATGAAGGATTAGGAGGACTTGAAAGTACACCAGTTTTAAAAAGATTTTAGAAGTTATATTAACCATTTTATTCAATCATTACCTTATTTTACTGTTTTGTTCATTGACCAGCCAGTGATTTTGAATGGTTTTTAAATATTTGTACAATTCTTACTATATTAATGTTTTTGTTTTTAATTTTTATAATTTGTTTTAAAATTCGAAGTCATTTGTTTAATATTTGATGCAGACTACATGTTAGGCTAATCAGCAATGCTCCGACAAGACAACCAAGGAAGCATGAAATGTTTAAGATACTTTTTTCAACCATATTGTGCAAAAGTAGACGGTGATGAGGTAAAAAGATTACTGGTTTTCCTAAATTAAGGCAAGACCAGTTCAGATTTGCTTCACCACAACTTCAAATATTGTTTGAACTAGCTTGTTCCGTTTTCCAACAGCGCTGTTACTACCACCAAATTTAGTTAGTACCACAGTTGCCATTTTCGTACAACAGAAAAAACATCACAATTATAGGAATCAAGAAACTGAGAAACAAAGTGTCTGTCTTCTTGTCATCATTTTTTTCCTGTTAGTTAACGATTTGCACCTCTTCCATTAGCTGTTGAATTCTCAACCCCTTTCAAATTCAGAGATAAAAAAGAAACAATGAAAAAGGTGTTTTTATCTGAACTCTGTGATGACGAACATAAACAGGGAATGTTATTCAGACTGCAGCGAAATCAATTTTGCAGCATTTGGCGCC


Gene Sequence:
>Vu_31579(-)
ATGCAAGAAGAGAATAACGCAGCAGGGCCGTTGCTTCAGAAGTTCAAAGGCGTTGTGCCTCAACAAAACGGAAACTGGGGTGCCCAGATATATGCAAACCACCAGAGAATCTGGTTGGGGACTTTCAAATCGGAAAGAGAGGCTGCAATGGCTTATGACAGCGCCAGCATAAAACTCAGAAACGGAGACAGCCACAGAAACTTTCCATGGAACGATCAAACGGTGCAAGAGCCTCAGTTTCAAAGCCATTACAGCACAGAAACAATGCTGAGCATGATTAGAGATGGCACCTACCCTTCACGCTTTGCCACATTTCTCAGCACTCGTCAACAAGGTGGTGTTCTCAAGCACGTAACTTTGAAGGATGACGGCAAGGAGCAGCTTTGCTGCACCCAGCTTTTTCAGAAGGAGTTGACACCGAGTGATGTGGGGAAGCTCAACAGGCTTGTCATCCCGAAAAAGCATGCAGTCACATATTTTCCTAACGTGTGTGACGGCGGCGCAGAATCGCATGAAGAAAATGTGAGTGCTGACGTTGAGGTTGCGTTTTACGACAGGCTCATGAGACAGTGGAAATTTCGATACTGTTATTGGAAGAGCAGCCAAAGCTACGTGTTCACGAGAGGGTGGAATCGGTTTGTGAAGGACAAAAAACTGAAGGCTAAGGATACCATTGCGTTTTTCATGTGTGAACCTGTGGATTGCAGAAAAGGAGGAGAGGGAGAAGCTTTTGGATTGATCGATGTAATCTATAGTTCAGATGAAGACACCAAAGATGAACACACTGTAAAGGATTTGAATGCAGAAAAGGGTTTGAAACTCTTTGGAGTTTTGATCAAATAGTTTCAGTTCATGCTGCTTATTGGAATAATTGAAGGTTTCTTTTACAACCTCCATAGAAAATTAATGAATTCACTTTGTAACATTTTTTTAAATAATTAAATTAGTTTTTATAATATATAAGAAGTACCCGTGTAATATTTTTAAATCATTAAAGAATTAGTGAAAGGAAATATGTACTTATATATAATTTTAGGCTAAAATTAATTTTTACTAAAATTATTTAATTTATTCTTTTATTTTTATTTTCAATTAAGTTAAATTCTTGTTAAAACATTTTTATGTTAAATATGGATAAATGACGTTAATATCGTCTTTATATATATATATATATATATATATATATATATATATATATATATCACTTATCATCATGTATAAAAGCACCAGTCACACAAATCTTGAAATGACGTAATCGAATAATTTTAACAAAAATTAAAAATTTGAAAAGTAAAATGACCAAATTGAATAATTTCAATGAAAATTAGAAAAAAAAATAGCCATAATTTTACGAAAGTTTAAATATAATTAATGAAATTAATTTTTCAAGATCAATTACTTGAGGAAAGGCGGAAAAAGAAGAAGAGAAAAGCGGGAAAGTGAACAGCGGTTGAAATTTCCCGACCCTCGTTAAAATTCAAATCTTAAAAGGGGTTCAGAGACACTTCTTCTAAAATTGGTTCAAATTCTAACCAAACCCCTTTTCTTCCCAAATTAGGGTTTTGGGTTTTGACAGAATGAAACGTACGCGCAGAGGCGATGCCGATGCCGATGCCGATGCCGATGCCGATGCCGATGCGAATGCCGACGGCGAGGGAGTTTCCAAGAAGAAAGCGGTGCGAGAGCAGAACCCCGCTACTCGCAGGGTCATACGCTCCCAGTTCCTCAAACTCAAGACTCTCATCGGCGGTAGGTGACGTTACCATTCACTCTTTAATTTATATACAACGCTAAATTCAATTTTTGTATCCCTAATTAGCTAACCCTAAACAAACCTAACAGAGAAAAGAGATGATTTGATGAACACGGAGTCCGAGAAATTCCACAACATTTTGGAAGAGTTCGACAAGTTACACGACCAAGGTAGGTAGCTGTACTAGTTCCTTTATTTTGTTCTCGTTCTCGTTGTTGTAATATTAATTCCTCCACTGGTTGTGTGGTTTACCCTTTTACTGATTGGTCTGGTTGGATGAAATTTTTGCAGTTGAGAAGCCAAGAGAGCAGGTTGCAGATGCAGAGGCACTGTTGGATCTGACGCGCACTCTGGTAGGATCTGTTAGGAGTTTGGCGAACGAGGGTGTCACCCCTTCACAATTTGTTTCCTCTTTGCTCATACGCTATGGCCAAGGTCAAGGCCAAGATTCAATCGATTGGCAGAAACTTGGCATTGCGGTGTCCCCGATATTCCTCTCCGTTCACGGCTCTACTACCATGTCAGTTCCTCTCCTCTATTCCTTTCACGTTTCTATAATACGCCCTTTCTGTTATTGTTTTTGCTTTTTTATAGGCTTGGACCTATGGACAACGAAATCAAGAAACGAAGAATCGGAGTGCGCAAACAACGTGATGCTCGCCCTGTCGCAACTACTAGACCTGAACAGGTCACTCCCCTTTTCATACTCCTAGGCTATTCCTACGAAAGTGTGACAATGTCGTTACTACTTGCTTTGACTATAGGACTAATAGACACTTTTAGTTCACTGTGCTCGGTGGCCCACTTTGGCTGTCGTGAAACAGATTGACTTATCTATGTGTTTTATGTCTGTGAGTGCGCTGGTATTCATGCATTGTTGTTTGTTTCGAGCAGCTTGATGAGGCTGGTGCGGTGGAGAAAACTGATACTGACAAAAACATGGCAACGATGTTTAACATCTTGAGGAGGACAAAACGTGTCCGACTTGAAAATTTAATTATCAACAGAAAGTCTTTTGCTCAGACCGTGGAAAATTTGTTTTCTCTGTCATTCCTTGTAAAAGATGGTCGTGCTGAGATCAGTCTCGATGAAAATCGTTTGCACTATGTTTGTAAGACGTTTCCACCTCAATCAATTTCTTACTTGTTTCGTATCTCTTTTTTAACCACGGGTACTTACACTGTCATCTTTTTCAGCTCCTAAAAATGCTCCAGCTGCTAACTTGGTATCATCAAAAGAAGTTTCTTATAGTCATTTTGTATTCAGATATGATTACCAAGATTGGAAGGTATGTATAGGTACACGAATGTAAAGTAAGAATTTGAGGAGCAAATTGAGAATTTAATTCTACGATTGACGTTTTTATGGGGTTGCAATAATTTAGAGTTACAACATCATTGTTTAAAAAGGGAAAAACTGTTAATGATATCATAAGTGGTTAACAATCCTGGCAGTATCAATGTGTATCGTATGACACTTTGTTCAACCACTGACCTTGAAAAAAGAAGAAAATAAAAAGCAAAATTATTGTTAAAAAACATTGGTTCTTTTTTCTGCTATTACAGACAGTTAATTAAAAGTATATGTACGTTGTTGATATTATGAGCTGTTGAATTATACCCTTTAGGCAAATATTGCTATAGTTCAAATGCGTTTTTCATTTAAAGGCCTGGACATTAAATTACAAGTCTCTATATAAGTCTTCCAACGTGTTTACAGCTTATGAAAGATGTAGTGCCGGAAGGGGAAGAGTTGATGCCAAATCGGGTTCAATGTGCTACCGCTGCTTACCCTCAGGAAAGGATGGGTGTGGACGATTCTCAACCTGCTTTGGCTTTAACACCTATCAGGAAGCTATCACGGAATCGAGGACTGGTTGTACAGGAGGAAAGTGTTGTAGAAGAAACTCCTGAATGTGATGAAGAAAATGTTTCCAGAGAAGCGGCTATTCGGAGGTGTAAGCGTAAACTTGATGAAGAAATAGCACATTAGGTGTGAACAACTTCAAATTTACATGAATATGTTTTGTTCAGCTCGCCAAGCTGACCTTTTAGTTATATATATAGAGAGAATGTAAATATTTTCAGGTCCATGATGCCATGCGTTTTGAAGGCTGGACGTAATTTTAGCTTCCTTTTCTGTCAATATTTCATCTGCAACTATCAGGAAAATTTTCACTGCATATAAGTATATTATGTTGGTGACAAGGGTTTCAAATGACCATGCTCTAATCAATTTGGAAAAGTACTGAAACATTCTATTCAGGAAACGTTGGTAGTGTGCGGTGAAGGCGGACCATGTTTATCAAAAAGCGATGTTACCAGT