Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_31574	LG8	48591186	48593672	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 isoform X1	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/A	48591189	synonymous_variant	p.Gly828Gly
G/A	48591238	missense_variant	p.Thr812Ile
G/A	48591375	synonymous_variant	p.Asn766Asn
A/G	48591402	synonymous_variant	p.Asp757Asp
T/C	48591621	synonymous_variant	p.Leu684Leu
G/A	48591642	synonymous_variant	p.Asp677Asp
G/A	48591657	synonymous_variant	p.Asn672Asn
A/G	48591702	synonymous_variant	p.His657His
G/A	48591705	synonymous_variant	p.Ile656Ile
T/G	48591777	missense_variant	p.Gln632His
A/G	48591837	synonymous_variant	p.Phe612Phe
T/G	48591960	synonymous_variant	p.Leu571Leu
G/A	48591962	synonymous_variant	p.Leu571Leu
G/T	48591974	missense_variant	p.Leu567Met
A/T	48591982	missense_variant	p.Val564Asp
G/A	48591993	synonymous_variant	p.Ala560Ala
C/G	48591996	missense_variant	p.Leu559Phe
G/A	48592017	synonymous_variant	p.Val552Val
A/T	48592099	stop_gained	p.Leu525*
T/G	48592155	missense_variant	p.Leu506Phe
A/G	48592173	synonymous_variant	p.Thr500Thr
G/C	48592174	missense_variant	p.Thr500Ser
A/C	48592203	synonymous_variant	p.Gly490Gly
A/T	48592254	missense_variant	p.Asn473Lys
C/T	48592280	missense_variant	p.Asp465Asn
C/T	48592334	missense_variant	p.Ala447Thr
T/C	48592342	missense_variant	p.Lys444Arg
T/C	48592343	missense_variant	p.Lys444Glu
C/G	48592384	missense_variant	p.Trp430Ser
C/T	48592390	missense_variant	p.Ser428Asn
A/T	48592392	missense_variant	p.Asp427Glu
C/G	48592394	missense_variant	p.Asp427His
T/C	48592396	missense_variant	p.Asp426Gly
T/G	48592398	missense_variant	p.Arg425Ser
C/T	48592399	missense_variant	p.Arg425Lys
A/T	48592404	synonymous_variant	p.Ile423Ile
A/G	48592433	synonymous_variant	p.Leu414Leu
T/C	48592469	missense_variant	p.Lys402Glu
T/C	48592489	missense_variant	p.Lys395Arg
T/G	48592490	missense_variant	p.Lys395Gln
C/T	48592508	missense_variant	p.Ala389Thr
T/C	48592517	missense_variant	p.Lys386Glu
C/A	48592518	missense_variant	p.Met385Ile
C/T	48592536	synonymous_variant	p.Gln379Gln
T/A	48592553	missense_variant	p.Ser374Cys
A/G	48592563	synonymous_variant	p.Gly370Gly
T/C	48592660	missense_variant	p.Glu338Gly
A/T	48592677	missense_variant	p.Asn332Lys
A/C	48592704	synonymous_variant	p.Thr323Thr
T/A	48592709	missense_variant	p.Ile322Phe
T/A	48592713	missense_variant	p.Glu320Asp
C/T	48592715	missense_variant	p.Glu320Lys
A/T	48592718	missense_variant	p.Leu319Met
T/C	48592721	missense_variant	p.Asn318Asp
T/G	48592734	missense_variant	p.Glu313Asp
G/A	48592766	missense_variant	p.Pro303Ser
A/T	48592851	synonymous_variant	p.Ser274Ser
A/G	48592882	missense_variant	p.Val264Ala
A/T	48592892	missense_variant	p.Tyr261Asn
T/A	48592898	missense_variant	p.Arg259Trp
C/T	48592936	missense_variant	p.Arg246Gln
G/T,*	48592951	missense_variant	p.Thr241Lys
T/A	48592953	synonymous_variant	p.Thr240Thr
T/C,*	48592960	missense_variant	p.Asn238Ser
A/G,*	48592964	missense_variant	p.Ser237Pro
A/C	48592968	stop_gained	p.Tyr235*
T/C	48592969	missense_variant	p.Tyr235Cys
A/G	48592970	missense_variant	p.Tyr235His
T/A	48592975	missense_variant	p.Asn233Ile
T/G	48592976	missense_variant	p.Asn233His
T/G	48592982	missense_variant	p.Ile231Leu
G/A	48592988	missense_variant	p.His229Tyr
T/G	48593000	missense_variant	p.Thr225Pro
A/T	48593020	missense_variant	p.Ile218Lys
G/T	48593024	missense_variant	p.Pro217Thr
A/G	48593037	synonymous_variant	p.Asn212Asn
G/A	48593048	missense_variant	p.Pro209Ser
A/T	48593054	missense_variant	p.Leu207Met
A/G	48593097	synonymous_variant	p.Arg192Arg
C/T	48593100	synonymous_variant	p.Ser191Ser
C/A	48593109	synonymous_variant	p.Pro188Pro
G/T	48593110	missense_variant	p.Pro188Gln
G/T	48593111	missense_variant	p.Pro188Thr
C/A	48593113	missense_variant	p.Gly187Val
T/A	48593115	missense_variant	p.Lys186Asn
C/T	48593120	missense_variant	p.Val185Ile
T/G	48593134	missense_variant	p.Asn180Thr
T/C	48593162	missense_variant	p.Ser171Gly
C/G	48593181	missense_variant	p.Gln164His
T/A	48593196	synonymous_variant	p.Leu159Leu
T/C	48593301	synonymous_variant	p.Gly124Gly
T/C	48593320	missense_variant	p.Glu118Gly
G/C,*	48593326	missense_variant	p.Thr116Arg
C/G	48593328	synonymous_variant	p.Ser115Ser
A/G	48593331	synonymous_variant	p.Gly114Gly
G/A	48593349	synonymous_variant	p.Asp108Asp
T/C,*	48593378	missense_variant	p.Thr99Ala
C/T	48593444	missense_variant	p.Gly77Arg
C/A	48593472	missense_variant	p.Trp67Cys
G/C	48593511	missense_variant	p.Ile54Met
A/G	48593529	synonymous_variant	p.Ala48Ala
G/A	48593567	missense_variant	p.Leu36Phe
A/G	48593575	missense_variant	p.Val33Ala
C/G	48593594	missense_variant	p.Val27Leu
G/C	48593621	missense_variant	p.Gln18Glu
C/G	48593631	missense_variant	p.Trp14Cys
A/T	48593640	synonymous_variant	p.Ser11Ser
G/T	48593662	stop_gained	p.Ser4*
C/T	48593669	missense_variant	p.Val2Ile

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_31574.1

MVSSNSSSNASLLWFHPQANMSATNVVICVITVILLPLLQLSLVSASAKTNVSIGDTLIAGNEGAQWLSPSGEFAFGFHQPESYSLFLVAIRYQNIPRTSFIWYANGDNPAPKGSTLELSKSRGLVLKNPQGVELWTSQLISGTISHGLMNDTGNFQLLGENSQILWDSFSNPTDTLVPNQIMEVKGPLSSRQKETNYTRGRFQFRLLPDGNAVLNPINLPTNRTYEAHYISNTYDSNNTTNSGFRVMFDDSGFYVLKRSYERVYITNPNDMLSTDSYYYRATINFDGTFTISRYPKSGASNPSWTVIKTLPEDICMNLESITAGSGVCGFNSICTLEADQRPKCTCPEGYSLLDSTDEYGSCRPNLELGCGGSGQSLQEDMYFMKEMANTDWPKSDFELYKPYNSEDCKNSCLRDCLCAVSIFRDDSCWKKKLPLSNGRRGGKVEASAFIKLRKNDALSDSPSDSFIKEKENEKDQDSLVTVISVLLGGSVFLNLMVITAVCIGLPLYYKKRSSTNNTVAESNLRSFSFRELVQATDNFREELGRGSCGIVFKGKTDLATIAVKKLDKLLKDSDKEFKTEVNVIGQTHHKNLVRLIGYCDELEHRILVYEFMSNGTLANFLFEDFKPSWNQRVQIAFGISRGLVYLHEECFTQIIHCDIKPQNILLDEHYNARISDFGLSKLLMINQSRTETGIRGTKGYVAPDWFRSAPITTKVDVYSFGVLLLEIICCRRNVDDKLEMDEKGILTDWAYDCYRDGRIDILVTNDDEAINDIDKLERFVMVAIWCLQEDPSLRPTMKKVMLMLEGIAPVTIPPSPCPYASVTVSCG*

CDS Sequence:
>Vu_31574.1

ATGGTTTCTTCAAATTCCAGTTCCAATGCATCTTTGCTTTGGTTCCACCCTCAAGCAAACATGAGTGCTACCAATGTTGTTATTTGTGTGATCACTGTTATCCTTCTTCCTTTGTTGCAACTCTCACTCGTCTCTGCCTCTGCTAAGACTAATGTTAGCATCGGTGATACCCTTATTGCAGGTAATGAGGGTGCTCAATGGCTCTCTCCATCAGGAGAGTTTGCATTTGGATTTCATCAGCCTGAGAGTTATTCTCTTTTCTTGGTTGCCATAAGATATCAAAACATACCTCGTACCTCTTTCATTTGGTATGCAAATGGAGACAACCCTGCTCCTAAAGGTTCGACACTAGAGCTCAGTAAAAGCAGAGGACTTGTGCTGAAAAACCCTCAGGGTGTTGAGCTATGGACATCGCAGCTCATATCAGGTACGATTTCCCATGGACTAATGAATGACACAGGCAACTTCCAGCTTCTAGGTGAGAATTCACAGATTTTGTGGGACAGTTTCAGCAATCCAACCGATACCTTGGTGCCAAATCAAATCATGGAGGTTAAAGGCCCGCTTTCATCGCGTCAGAAAGAGACCAACTACACACGAGGAAGGTTCCAATTTCGCTTGCTTCCGGATGGTAATGCTGTGCTTAATCCTATAAATTTGCCTACCAACCGTACTTATGAGGCTCACTACATCAGTAACACTTATGATTCCAACAATACAACGAACTCCGGTTTCCGAGTGATGTTTGATGATTCAGGATTTTATGTATTGAAGAGGAGCTATGAGAGGGTTTATATTACCAATCCAAATGATATGCTCTCTACTGATTCCTATTACTATAGAGCAACCATAAATTTTGATGGAACTTTCACCATATCCCGTTACCCGAAAAGTGGAGCTTCAAATCCAAGCTGGACAGTTATAAAGACATTGCCAGAAGACATTTGCATGAATTTGGAATCAATCACTGCTGGTAGTGGGGTCTGTGGATTCAATAGTATCTGCACTCTGGAAGCTGATCAAAGACCTAAGTGCACATGCCCAGAAGGCTATTCTCTTCTTGATTCAACGGATGAGTACGGCAGCTGCAGACCAAATTTGGAACTCGGTTGTGGAGGAAGTGGACAAAGCTTGCAGGAAGATATGTACTTCATGAAGGAAATGGCAAATACTGATTGGCCTAAATCAGATTTTGAGTTGTATAAACCTTACAACTCAGAGGACTGCAAGAATTCTTGCTTGCGAGATTGCTTATGTGCTGTTTCTATTTTTAGAGATGATAGCTGCTGGAAGAAGAAACTGCCTCTCTCAAATGGAAGACGGGGTGGAAAAGTTGAGGCATCTGCTTTCATTAAGTTGAGGAAAAATGATGCCTTGTCAGATAGTCCTTCAGATTCATTCATAAAAGAGAAGGAAAATGAAAAGGATCAAGACAGTTTGGTAACTGTGATATCAGTCCTTCTAGGGGGTTCTGTCTTTTTGAATCTCATGGTGATCACTGCAGTATGTATTGGTTTACCCTTATACTACAAGAAGAGAAGTTCTACAAATAATACTGTTGCAGAGAGCAATTTGCGCAGTTTCAGCTTTAGAGAGCTTGTGCAAGCAACAGATAACTTCAGAGAAGAATTGGGAAGGGGATCTTGTGGCATTGTCTTTAAAGGAAAAACAGATTTGGCCACTATTGCTGTCAAAAAACTGGACAAGTTGCTAAAAGACAGCGATAAGGAATTCAAAACAGAAGTGAATGTAATTGGCCAAACTCATCACAAAAACTTGGTTCGCCTGATTGGATATTGTGATGAGCTAGAACACCGGATTCTGGTGTATGAGTTTATGAGCAATGGCACTTTGGCAAATTTCCTTTTCGAAGATTTCAAACCTAGCTGGAACCAAAGAGTCCAGATTGCCTTTGGGATATCGAGAGGGCTGGTTTACTTGCACGAGGAATGCTTCACCCAGATCATCCATTGTGACATAAAGCCTCAAAATATACTTCTTGATGAGCATTACAACGCAAGAATATCAGACTTTGGATTGTCAAAGCTACTAATGATTAATCAAAGCCGCACAGAAACTGGCATTCGAGGAACAAAAGGGTATGTTGCACCAGACTGGTTCAGGAGTGCGCCGATCACAACCAAGGTTGATGTCTACAGTTTTGGTGTGCTGCTTCTGGAGATCATTTGCTGCAGGAGAAATGTAGATGATAAGTTGGAGATGGATGAGAAGGGCATTTTAACTGACTGGGCTTATGACTGCTATAGGGATGGAAGAATAGACATTCTGGTTACAAACGACGATGAGGCTATCAATGACATAGATAAGTTGGAAAGGTTTGTGATGGTAGCTATTTGGTGCCTTCAAGAGGATCCCTCTCTCAGGCCAACAATGAAGAAGGTGATGCTGATGCTGGAAGGAATAGCTCCAGTCACAATTCCACCAAGTCCCTGCCCTTATGCCTCTGTTACTGTTAGCTGCGGCTGA

Promoter Sequence:
>Vu_31574::LG8:48593672-48595672(-)

ATTCCCTACTTTGGGTGTCAAGTGAGCATTTCAGTACTGTGCTGACATTTTTATGTACCTTGTCTCAATTTTGGTTCTCTGCTTTGAAGCAGGAAAAAAAACTATGGTAATTGGATTTCCTGTATGGGCAGGTTTTTAATTTAATTTAACGTCTTAAAATGTAAATTTAGATTGTTTCTTTGTGCCCCTTATTTCCTTATATAGACGAAACGCATCCCCTGTTATGTTTTACTTTTAGGGTCATTTTGCATTCCGGCTTAGACAAAACGAGGCTAGACCCCCTTTTCCTCGTATTTTAGATTGAACGCGCTTCTTTTTCTTGAATCTTTGTTTCGTATCAAGAACAACGCAAGGCCCATGTCAACAATATTCATTAAGTTCTCTGTTCAAAACCGGACAGCACTTTAAGCGTTTAAAAGGATATTGTTGTTTATTAATGGTTTAGTTGTCAGCACTTGCATTGACAGGCCCGTCTTCTTTTGGAAAAGGATTGGTGGACATTAATTTCCAGTTAACAGTGAGTAAAATAGGAATGTGTGATATAATTTTGGTGTAATAGAAAAAGATGGGCAGAAATGTTAGATGTTGATAGTGTACGTTATGTGAAGTTCTGTATCCTGATGTGTCTTTCGTATGCTTTTACTTTCTTCTTTTGTACTAAAAAAATGTCCTCTTTTGTGGCACTAATTTGAAAGGTGAGGTAGGGTGGTCACCGGCCATTCAGCTACCCAAGTTTGTACTATTATTTTATCTGTTTTTAATTTTTTTAAAAAAACAAAATTGCTTATAAGTGATGTTTTGAAAAAATTTCTTCATTGTCTACGGCTTAAACTAGCAAAAGCTGCAGAATGGTAAACTAGCAAAAGCTTAAATTATAAAGTTAGATTGGGAATGATTGAATGGGGTGGCATAGGTAGCCAATTGGATACATTGTAAAATCGATAAATTGTTAATCTTTTAGAAGACAATTTATCTGTTGATTACCATAGTAGTGAGTTAACTCGTATAATCACTGTTTCATAAGTTATATGAATAAGAATTTTGTGTTATATAAAAATTCTACAATGTTTTTTCTTTAGCGGTCAGTCTTACAAAAGTTTTACAATGTATACGAGAAACTAAATTATACACTTAAACATGTGCATATTTTTATCTTTATAATAATTATTATTAAAAGTCATCAATCATGAATTGTGTTGAGTAGTTTCAGAAGTTATACTCCGCGTGACTTTTTAAGTGATAATAAATGTTAGAAAATGCATTTAAAATATAATGTGATTTAAAAGATTATATTATATAAGCAAAGGGAACCTTTTATGTTTAATAAATACTTCCGATTGATGGTAAATTTGGTGTCTATGTCACGGCAACGATCATATCAATTTACATCTAAGAGAGCAATTCAAACTTCCTATTACCTTTGAAAGGTGGACAAATCGTAATAATCAATAACTAAACCATGATGAAATTTGGAAGCGTAATTTACACCCATTTGCTTTTCAAAGTATGGACCACACTAACGTACTCTTCAATTCCCCACTTCATATTTTCCAAATATATTGTTGAATTTTAAGTTATTACACATACATACATGTTTGAATTTTATAAAAGACTAATTTTGTGTGGTTTTTAAATTTGACTATTGGTCTTGGGTGCGCATACTATAAAGAAAAGTTATATGAATACTTACAACTTCATGTTAATAATATAACAGTATATATTAGTACTTTAAACTAAACAAATAAATTAAAATACTAGAAAAATTATTTTTCAAACAGTTCTTATTATTAAAGAAGTCAATGCTGTATAAACACGCTTTCATGCAAAGAAGCAGCTCAACTTTACTGATATTTCAAATTCAAAGTCAGTTTAACGTGTCGTGCAAATTGAAGCAAGAATTAATATAGCACTTCCTCTCTCAGTTTTAGAAATTACCTGGAAGACTTGATCAAATGATACTGTTCTGCTGAATAGTCAGAAGTGCGTTTCAAAAACATAGC

Gene Sequence:

>Vu_31574(-)