Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_31559	LG8	48478131	48479159	PREDICTED: uncharacterized protein LOC108324849	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, root radial pattern formation, root radial pattern formation, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus, nucleus, nucleus
Molecular Function	enables	DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
T/C	48478143	synonymous_variant	p.Pro339Pro
T/A	48478227	missense_variant	p.Glu311Asp
T/A	48478364	missense_variant	p.Arg266Trp
G/A	48478443	synonymous_variant	p.Cys239Cys
G/T	48478513	missense_variant	p.Ala216Glu
T/A	48478523	missense_variant	p.Arg213Trp
T/C	48478592	missense_variant	p.Ser190Gly
T/C	48478653	synonymous_variant	p.Thr169Thr
G/A	48478752	synonymous_variant	p.Val136Val
A/G	48478758	synonymous_variant	p.Ala134Ala
T/A	48478782	missense_variant	p.Leu126Phe
A/G	48478783	missense_variant	p.Leu126Ser
C/T	48478829	missense_variant	p.Glu111Lys
G/A	48478834	missense_variant	p.Thr109Ile
C/T	48478837	missense_variant	p.Arg108His
A/T	48478926	synonymous_variant	p.Ser78Ser
T/C	48479067	synonymous_variant	p.Gln31Gln
T/C	48479100	synonymous_variant	p.Lys20Lys
A/G	48479106	synonymous_variant	p.Val18Val
G/A	48479136	synonymous_variant	p.Thr8Thr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_31559.1

MANNFSTTLFPLSASNAVQKSEALTVKGMSQLGLSQRVKSLRKISLAAKRRPAMFHGTEKGKGKEVLRAHFSDLSPTSLDVDGGDTESILRKSQIVREKLENAVCNTRTEENNKKAKEMLQAKLLLAFASESDAAVGETSSTPQRGSFLNHFAYPFPNRSSAHFSQADTEVDKSITLCATPLRVCLPGESVYGGQKTRNGSVGEAVEDVCCSRGDASEYDGRMHSNPYKKNGPYTCPKCGCVFETSQRFAAHVSSRHYRYETKSERKKRMMAKIRRRSVRLEWENGALSVVGDDGCRRNSSVFAPAEVKIETESVVRLQLAPPPGWPKITEAVRIKLEPLDN*

CDS Sequence:
>Vu_31559.1

ATGGCCAACAACTTTAGCACCACCCTCTTCCCTCTCTCGGCTTCAAACGCAGTTCAAAAAAGCGAAGCTTTAACGGTGAAAGGAATGAGCCAACTTGGGTTGAGCCAAAGGGTCAAGAGTCTCAGAAAAATCTCATTGGCCGCGAAAAGAAGACCAGCGATGTTTCATGGCACTGAAAAAGGGAAGGGCAAAGAGGTTCTGAGGGCCCACTTTTCGGATCTGTCACCAACTTCTCTAGATGTTGATGGTGGCGACACTGAGAGCATCTTACGAAAGAGTCAGATAGTGAGAGAAAAACTGGAAAATGCAGTTTGCAACACTCGCACTGAGGAGAATAATAAGAAAGCCAAGGAAATGCTGCAAGCCAAACTTCTCTTAGCATTCGCTTCTGAAAGTGATGCTGCTGTCGGTGAAACTTCCTCAACACCCCAAAGGGGAAGTTTTTTGAACCATTTTGCTTATCCCTTTCCGAACCGTAGCAGTGCCCATTTTTCGCAGGCAGACACAGAGGTTGACAAAAGCATCACCCTTTGTGCAACTCCATTGAGGGTTTGTTTGCCCGGCGAAAGCGTTTATGGGGGGCAGAAGACGAGAAACGGCAGCGTGGGTGAAGCGGTTGAGGATGTTTGTTGTAGCAGGGGCGATGCGAGCGAATACGACGGTCGGATGCACAGCAATCCGTACAAGAAGAACGGGCCGTACACGTGTCCGAAGTGCGGGTGCGTGTTCGAGACGTCGCAGCGGTTTGCGGCGCACGTGAGTTCGAGGCACTACAGGTACGAGACGAAGAGTGAGAGGAAGAAGAGAATGATGGCGAAAATCCGAAGGAGGAGTGTGCGTCTTGAATGGGAAAACGGTGCACTGAGTGTTGTTGGTGACGATGGTTGTAGAAGAAATAGCAGTGTCTTTGCTCCTGCTGAAGTGAAGATTGAAACTGAGAGTGTTGTGAGGCTTCAGCTTGCTCCTCCTCCTGGATGGCCAAAAATAACTGAAGCTGTCAGAATAAAATTGGAGCCATTAGACAATTGA

Promoter Sequence:
>Vu_31559::LG8:48479159-48481159(-)

TTAAAATAAAAATTATTATCAATTTTAATAAATAAAAAAATACATTTCAGAATAAAAATATATTAAATAAATCCTTTTATTAGTTCTTTTAATATTTTTATTTATCTTTTACATATACGAAATGAATTTTGATTTAATTTTATTATTTTAATGTTTTTTTATTTTAATTATTCATTTTATTATAATAATAAATATATTTATAAATATTATTTATATTCATATATTTTAATTTTAATTATTTATTATGATGAAATAAAAAAAACATATATTTTATTATATTTTATTTTATTTTAATTGATTACACGTTTTTGTTTAATTGATTAATTTTTTTCTTTCACAGATCAAATTAATAAAGTATTTATAAAAAATGACTTTCTTTGGACGTCGTATAAATGGAAACTATGTATTTATAAATGGAAAATATATAAAAAGAATTAATGACTCGAAGAACAATGAATTTGGATGTAGTATAGGCACTAACCAACAAAAAAAAAATCAATCCAATTTTCTTATGGTAAAATAGGAAAAAAATATATTTACCACCTATATTAATTATTAAAAAAGATAAAAATATTTTGAGAATAGTTCTTAATTTTAGATGCTTTCTCATCTTTATTTAATGTGAAACTTAGACTCACACTTGAATTACACTCCCCTTTAGCGATAACATTTTCAACCAACCATAGTCACAAGTAGCAATGGATTTATTGACGAGGGAGTTCACAGGGAGACAAAACCACCAATGAGACATGAGTCCAACCACATAAAGGGATCGACACCATTCTCTATCAAAAATCTTAAGGCAATGGATTAGTGAGTCTTTCACCTCTATATAATACTCTATTTTCTCATTTTTATTTAATGACTCACACACTTGATTCCCAACACTCAAATCCTACACAAGTCTTTTAATAATTTTAAGTATCATAAATATTATTTTAATGCCAAAACTTGATTTTTTAGTGACTGAGAGAACAATGAACTTGGACGTTGTAATAGGAAAAAAAATAATTTTTACCTCCTATATTAATTATAAAAAATGATAAAATATTTTGAGGTTAGTTCTTAAATTCCACGTCTTTTAATAACTTTTGAATAAATATACGAAGTATTTTTGATACTATAACTAATTATCATCTATGTGTTGGGTCTAACAATGAGTAGGTTCATAAGGAGACATAAACACCAATAATAACATCTAAGTCCAATTATATAAAAGATTGACACCACTCTTTACCCAAAACCTTAAGATAATGAGTTAATAATCTTCTATCTTTATACAATGTTCTTCTTTCTCATTTCTGTTCGATGTGAGACTTAGACTCATATAAATGAATAGTGATTAATCAAATGTAGAAGAAAATTGTAGATGTTAGATGTGATAAAAAAATAACTCTGGCCAAAAAAATAAAAAAATGGCGATGATAGATTTTTTTTATCAGAGTTATCAATTATGAATAATTAATATAATTAACTGAGATTTAGGTAGAAATAATCAACCAATAAAATTAAAGTTATTCCTTTTTTCAGGTAGTGGGCGTTTAGACCAGTATTTATTAATTAGTAAAATAAGTTTACTTATAATAAAAAATTATAATTTTCTTTTGTAAGTATTTAATGTCAGTAGTACAAAAGTCTATTATTTTCAGGATTTATCGTCAAATTGCTGGTCAAGTCTTCAACAAAAAATCATCATTTCTAGTATCAATTAATTGAAACACATTTTTAATAAATGCTGAAATCTCAATATAAATTAATAAGGCAAGAACTTTGAGAATTGACTCGTGTATTTTAAATTAAAAAATATATATTTCAAATCCCAAATAAATTGGTTCCTTGATGAAATTAATACCATGCATTAGTAAGAAAAATAAATTAATACGAAAGTGAATAAAAAAGAAAAAATTGACAGAAACACGTTATAAAGTGGCGAAGGAAACAGCAACTATACAAGCGCATGCACACTCATTTTCAGAATCTCTTTGAATTCCTTCACGACA

Gene Sequence:

>Vu_31559(-)