Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_31406 LG8 47273362 47275150 PREDICTED: B3 domain-containing protein Os03g0620400-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C 47273409 synonymous_variant p.Asp16Asp
G/T 47273413 missense_variant p.Asp18Tyr
A/T 47273414 missense_variant p.Asp18Val
G/T 47273508 upstream_gene_variant
T/C 47273548 upstream_gene_variant
A/T 47273709 missense_variant p.Lys69Asn
A/G 47273757 synonymous_variant p.Leu85Leu
C/T 47273892 synonymous_variant p.Phe130Phe
G/A 47273990 missense_variant p.Arg163Lys
C/T 47274027 synonymous_variant p.Asp175Asp
C/T 47274186 missense_variant p.Thr195Ile
G/C 47274236 missense_variant p.Gly212Arg
T/A 47274251 stop_lost p.Ter217Lysext*?
A/G 47274252 stop_retained_variant p.Ter217Ter
T/A 47274342 upstream_gene_variant
T/A 47274429 missense_variant p.Val249Glu
C/G 47274437 missense_variant p.Arg252Gly
G/A 47274504 missense_variant p.Ser274Asn
A/G 47274533 missense_variant p.Asn284Asp
T/G 47274547 missense_variant p.Asp288Glu
A/T 47274548 missense_variant p.Asn289Tyr
A/G 47274634 synonymous_variant p.Thr317Thr
G/A 47274672 upstream_gene_variant
T/A 47274726 upstream_gene_variant
C/A 47274806 missense_variant p.Pro345Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_31406.1
MSSGDGSAIHFFKKIDEDTLRNGDLRIPRSFVSKYWQDISNPLHLLLPKGAEWEVKWRKVGADIWLFDKWKKFAEFYSLDENDLLMFKYVGMSRFEVTILHQTGLEIMYPLKEATLDNAENGNGNSSLHFKKTKSSLPRCRFSKKVKTNCRNPPNISEDVTNRSGPSHSIKEELDEQNANGFHSTKFQKRGTKRKPSACNFSTRSGTAMERAESFRSKNPFFIRKMQPSYIQRHNMRVPSSFITEAEEDVHDRVTLWTSESRPWHVEFCRNNSSSQINFTTGWKNFVKDNNLRLGDVCVFEKIKKSGISFKVIIFRDTEESSSPRFSDHSIPECKERELENHFSVCLKPMDLYYVNLPRDFFKNHGIRHSNAVMLEVGKKSWDVKLDPYCRFTVGWCEFIRGCQLKPGDVCRFELMDKKKIVFEVTIVTCME*


CDS Sequence:
>Vu_31406.1
ATGTCTTCTGGTGATGGTAGTGCCATTCACTTCTTCAAGAAAATTGATGAAGACACACTTCGAAATGGGGATCTGAGAATACCTCGGAGTTTTGTGAGTAAATACTGGCAAGATATATCAAATCCACTGCATCTTCTTCTTCCCAAAGGTGCTGAATGGGAAGTGAAGTGGAGAAAAGTTGGTGCTGACATTTGGTTATTTGATAAATGGAAGAAATTTGCAGAATTTTATTCTTTGGACGAAAATGATCTCTTAATGTTCAAATATGTGGGTATGTCTCGGTTTGAGGTGACCATACTTCATCAAACTGGCTTGGAAATTATGTACCCTTTAAAGGAAGCAACTTTAGATAATGCAGAGAATGGTAATGGTAATTCTTCACTACACTTCAAGAAGACAAAATCTTCTTTACCACGTTGTCGTTTTAGCAAGAAGGTGAAAACCAACTGTAGAAACCCACCTAATATCTCTGAAGATGTTACAAATAGAAGTGGTCCATCTCATAGCATCAAGGAGGAGTTAGACGAACAAAATGCAAATGGTTTTCATAGTACAAAATTCCAAAAAAGAGGTACAAAAAGAAAACCCTCTGCCTGTAATTTTTCAACTAGAAGTGGCACTGCTATGGAGAGAGCGGAATCTTTCCGCTCTAAGAATCCCTTCTTCATTCGTAAAATGCAACCATCATATATTCAAAGACATAACATGCGGGTGCCGAGTAGTTTCATAACAGAAGCTGAAGAAGATGTGCATGACCGTGTTACTCTTTGGACTTCTGAAAGCAGACCTTGGCATGTTGAATTTTGTCGGAATAATAGCAGTAGCCAAATAAATTTTACTACTGGATGGAAGAATTTTGTAAAGGATAATAACTTGCGACTAGGGGATGTATGTGTTTTTGAGAAAATCAAGAAATCGGGAATTTCATTCAAAGTTATAATTTTTAGAGACACAGAAGAATCAAGTTCTCCTAGGTTTTCAGATCATTCAATTCCTGAATGCAAAGAAAGGGAGTTGGAGAATCACTTCAGTGTCTGCCTCAAACCTATGGATTTATATTATGTGAATCTTCCAAGGGATTTCTTTAAAAATCATGGTATTCGTCATTCGAATGCAGTGATGCTGGAAGTTGGGAAGAAATCATGGGATGTGAAACTAGACCCTTACTGTAGATTCACCGTTGGGTGGTGTGAATTTATTAGAGGGTGTCAATTGAAGCCTGGAGATGTTTGTCGATTCGAGCTGATGGATAAGAAAAAGATTGTGTTTGAAGTTACCATTGTAACATGCATGGAGTGA


Promoter Sequence:
>Vu_31406::LG8:47271362-47273362(+)
ATCTTGATTTAGTTTTTGATTCTGCTCTACATTCAAACTCTTGCAATAAAAATATACCTTATGCAGTGCGTACCAGATCTGAAAGACATTATTGGAAACAAGTGTGCGGTGCTGCAGCTTGGGGAAATATCATGGAAAGTAAAGTTGTTATTTAATAACAGTTGTTTTGCTCATCATAGTTTCGGTGCTGGCATTCACTTGTTTTTGACAGAGAGTGAAGTGCAACCGGGAGATGTTTGTGTATTTGAACTGATTAGCAAAGATGATTGTGTTTTTAAAGTTCATATTTTCAAAAGCGATCAATGGTTTCCCTACATGAAGCTGTGTTCTTGCTGAAGAATTTGTAGAAAAACCTTGAAGATACTATCACCCTTTGTTCTTTTTGTTTCACTTTAGAGACAGAGAAGAATCAAGTTCTCTGAAGTTTTCATGTTGTTGGTATTTCTTAAGTAGTGCTTACTAGTTATAACTGTAGCATGCTATGTTTCTTCATATTTTTTGACCTTTTGATTTGTTTTTAATTTTTAGATCATACAATTTCTGAACTCAACCACAGGGTATTATTGAATTACTTCAGTGTCTGCATGAATCCTCGGTATTTGCCTTCTTTGGTATGATTATTATTAGGATAATGATATTTTGACAATATTTTTCTGATAATATTTTAATATTATTTACGTGTCATAATCAATAATAATAATAATCATAAACATCAACATGAATCAATTACATAATGACACGTAGATGGTGTTAGCACGTTGTTAAAAAAATATTGTCAAATTATCATTATCTTTATTATTAATTAGAATTAGAAGGGTGTTTTAGAAATGCAAACATGTTGAGTGATGTGACTCATTAGGTTGAGTGTATATTATGCAAAGGAAGGAGTTTCTTCGAAAATAATGGTATTAGTAATAATTAAGAAGCAGTGACCCTGGATGTTGGGGAGATATCATGGAATGTGAAGTTAGATTCTCGCTGGATGCAGATTTTTGTCGCTTTGAGTTGATTGATACGAAGAATATTGTGTCTAAAGTTACCATTGAAACCTGCATTGACCGATGTTTGTCATTGATGTTTGTTTCTTTCTTATTACTTTTTGAAACCTATCTAATTAGGTTAATGTATGTTTTTTTTTTTTGGAATTTGGGTTCAGGATTACGGTTATTTTGAAACCTATATGTCTCTAGGTCAAGGGATGTCTCTTGTGGAATTTGTCTTATTACTGAATTTCGATTTTGTATGTTTTAAATTTGAAACACATTTATTGAAGTTATTGTTAGATTATTAATAGAGTAGAATTTCTAGGTATAGTATAACGTCCAATCTAATTTAAACTATTAAACTAATATAAATAATTAAACATAACATTACATATTTTAATAATGCACAATATATATATATATATATATATATATATGTATATATATATATATATATGTATATATATATATATATATATATAAGGTCTTACGAACTAATAAGTCTCTCAAAGGATAAAAATTACTATGCAACATTTAGTTAAACCTAACCAATTACTTGATAACATCATCAACCTCTTTTTTTCGTAAATGAATGATGAATTATTAGAAATTATACACGTACATAAGATAAAGAAAAAGACCACCGTGGTATTGAATAGCCCTAAAAATTTTATATTTAATATGGAAGATAACATGTGTAGAACTAAATATTAAAAAAAAAAACTTATTTTAGTCTACAAATTTTCAACGTGACGTGATCAGAATTCATTAATAGTAAAAAGTAAAAAAACTCAGTTACAAAATAATACTGTTTGATACAGGTATATATATAGTCAACAGTCAACTAAGAATATAGTCCTTTTCCCTTTCCAAGGAATCATCATTAAAGAATTTGCATAGTGAACAGTTATATTCATTTATTGTTCTATAAATCATAATTTATTATACATCCTAAACCTTGTATCATATGAAAGGTGATACTTTGAATAGTCGAAATCCTAGTTCATTGTCGAACAA


Gene Sequence:
>Vu_31406(+)
ATGTCTTCTGGTGATGGTAGTGCCATTCACTTCTTCAAGAAAATTGATGAAGACACACTTCGAAATGGGGATCTGGTACTTGTTCATTCATTCTTTTTTAAAATCTTCCATTTATCAAGTATCTTTTTCAGTCAAGATTTTGAAGGGGTGAATGACTCTTATTTTCCATTTAATATTATGCTGTTGTTATTGACTCTGTTGAATATTTCATGATAGAGAATACCTCGGAGTTTTGTGAGTAAATACTGGCAAGATATATCAAATCCACTGCATCTTCTTCTTCCCAAAGGTGCTGAATGGGAAGTGAAGTGGAGAAAAGTTGGTGCTGACATTTGGTTATTTGATAAATGGAAGAAATTTGCAGAATTTTATTCTTTGGACGAAAATGATCTCTTAATGTTCAAATATGTGGGTATGTCTCGGTTTGAGGTGACCATACTTCATCAAACTGGCTTGGAAATTATGTACCCTTTAAAGGAAGCAACTTTAGATAATGCAGAGAATGGTAATGGTAATTCTTCACTACACTTCAAGAAGACAAAATCTTCTTTACCACGTTGTCGTTTTAGCAAGAAGGTGAAAACCAACTGTAGAAACCCACCTAATATCTCTGAAGATGTTACAAATAGAAGTGGTCCATCTCATAGCATCAAGGAGGAGTTAGACGAACAAAATGCAAATGGTTTTCATAGTACAAAATTCCAAAAAAGAGGTGAAATGTTGGATCTTTGTTTTTTTTCTGTTCTTTTTCAAAATCTTGAAGATCCTGTAACCCTTTGTTATTTTCTTTTCACTCTAATGTTTCAACAGGTACAAAAAGAAAACCCTCTGCCTGTAATTTTTCAACTAGAAGTGGCACTGCTATGGAGAGAGCGGAATCTTTCCGCTCTAAGAATCCCTTCTTCATTCGTAAAATGCAACCATCATATATTCAAAGACATAACATGGTACCCTTCTCCCAAACAATCAAATCATATTTATAGTAATTAATTTGTAGTTGATGTTATTTATTTTTAATTTAACACAGCGGGTGCCGAGTAGTTTCATAACAGAAGCTGAAGAAGATGTGCATGACCGTGTTACTCTTTGGACTTCTGAAAGCAGACCTTGGCATGTTGAATTTTGTCGGAATAATAGCAGTAGCCAAATAAATTTTACTACTGGATGGAAGAATTTTGTAAAGGATAATAACTTGCGACTAGGGGATGTATGTGTTTTTGAGAAAATCAAGAAATCGGGAATTTCATTCAAAGTTATAATTTTTAGAGACACAGAAGAATCAAGTTCTCCTAGGTTTTCAGGTTATTGGTGTTTGTTAAACAGTGCTTACCACTTACAACTGTAACATGCTATGTTTCTTCACCTTTTGATTTGTTTTTATCGTTTTAGATCATTCAATTCCTGAATGCAAAGAAAGGGAGTTGGAGAATCACTTCAGTGTCTGCCTCAAACCTATGGATTTATATTATGTGGTAGGATTAATTAGATAGGAGTTTCAGAAATGCAAACATGTTTTTGATCATGTGACTGATTAGGTTCAGTGTGTATTATGCAGAATCTTCCAAGGGATTTCTTTAAAAATCATGGTATTCGTCATTCGAATGCAGTGATGCTGGAAGTTGGGAAGAAATCATGGGATGTGAAACTAGACCCTTACTGTAGATTCACCGTTGGGTGGTGTGAATTTATTAGAGGGTGTCAATTGAAGCCTGGAGATGTTTGTCGATTCGAGCTGATGGATAAGAAAAAGATTGTGTTTGAAGTTACCATTGTAACATGCATGGAGTGA