Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_31404 LG8 47257999 47259216 PREDICTED: B3 domain-containing transcription factor VRN1-like
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Annotations  
category   relationship type   keyword
Biological Process   involved in   response to cold, cellular protein localization, response to cold
Cellular Component   located in   nucleus, nucleus, plasma membrane
Molecular Function   enables   DNA binding, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
C/T 47258105 missense_variant p.Ser36Phe
G/T 47258115 splice_region_variant&intron_variant
C/A 47258156 upstream_gene_variant
A/C 47258160 upstream_gene_variant
G/T 47258185 upstream_gene_variant
T/A 47258195 upstream_gene_variant
T/C 47258271 upstream_gene_variant
G/T 47258272 upstream_gene_variant
C/T 47258414 upstream_gene_variant
T/C 47258465 stop_lost p.Ter41Argext*?
T/C 47258483 stop_lost p.Ter47Argext*?
G/A 47258575 synonymous_variant p.Thr77Thr
T/C 47258661 upstream_gene_variant
C/T 47258707 upstream_gene_variant
T/G 47258849 missense_variant p.Leu114Arg
C/T 47258994 synonymous_variant p.Asp133Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_31404.1
MASQILRTDATLPIFFFKVILKTNLERLVSTLSLISIYDENDNLVQTEDTADENDNLVQTEDKPNMILDEETQQKAERIGGENYAQRTSSLNWPTQTRARQIASNFVSCNPFFTFFIKPCHERQYRLCVPDLKDIIGSKKCAVLQLGERSWKVKLLHSTKRFRQYRFGAGYYIFSSESELQSGDVCVFELISTKDCVFKVHVFKRDH*


CDS Sequence:
>Vu_31404.1
ATGGCTTCTCAGATTCTCAGGACGGATGCTACCCTCCCAATCTTCTTCTTCAAAGTTATTCTTAAAACAAATCTCGAAAGGCTTGTAAGCACTCTTAGCCTCATATCTATATATGATGAAAATGACAACCTTGTTCAAACTGAAGACACTGCTGATGAAAACGACAACCTTGTTCAAACTGAGGACAAACCCAACATGATTTTGGACGAAGAAACACAACAGAAAGCTGAACGAATAGGGGGTGAGAACTATGCTCAAAGAACTTCATCTTTGAACTGGCCAACTCAAACCAGAGCACGACAAATAGCTTCCAATTTCGTCTCATGCAATCCCTTCTTCACCTTCTTCATAAAACCTTGTCATGAGAGACAATATCGTCTGTGCGTTCCAGATTTGAAAGACATTATTGGGAGCAAGAAGTGTGCGGTGCTACAACTTGGGGAAAGATCTTGGAAAGTAAAGTTGTTACACAGTACCAAACGTTTTCGACAATACAGGTTCGGTGCTGGCTATTACATATTTTCGAGTGAGAGTGAATTGCAATCTGGAGATGTTTGTGTATTTGAACTGATTAGCACAAAGGATTGTGTTTTTAAAGTTCATGTTTTCAAACGCGATCACTGA


Promoter Sequence:
>Vu_31404::LG8:47255999-47257999(+)
TTAATGTTCAAGTATACTCTTACGCAGATTTATTTATATTTATTTCAACAAGTATATCTTTTGTATCTTACAAACTCTCGCATACTGATGTTTACAGTCGAAACAAAACAGAATAATATTTTGATTACGACACACAAAGCCAGCCAAATTAATCATATTAGTACTATCAATACAAAGCTTAGGGTTACAACCCTTCAGTCCTACACTACTCCCCATCAGCCAGTATTAGGTTCAACTATACACTGCATAGTACCCCCAAACTACCAGTCTTCAGTACTGCTCTTAAAAGGGTAACCACATTTGCAACATGGAATAGTATCAAGAGTTGTTTTTCAGCCACAACACAATCAGTACAGAAAGTGATAACATAATAGTATAATCATAAGAACTCTATCATAGACCCGGAAAAGGGATTAATTACTTGATATAGGGGCAAATTGAATTGTTAGTAGCCCTATCAATTTTAATTAGTAAAGTACAAGAACGTGAATAGGGCACTGCCGAAGAATCAAGAACCGCGAATCCACTAATCCTAGAGGGCGATCAGTGATGTGGCGAGACAATTGACGATAAGAGAAAAGCGCAGAGGAGAGTAATTGAAAAACTTACAGCGAAAGGTAGAGGAAAAGGAATCAGGCATTGGCGGGTTTGGGGACGAGGATTAGCGGTTGTTTGGCGTCGGCCTTTTGCTGTTCTTCGCGGATCTTCTGCATCTGAAGCATTCTCTCCATGACGAGCTCGTACTCGCACTTTTCGTAGGAGTGACGCTCGTTCTCGCACTTCCACGGAAGATAAAACTCCGCTTGCCTGCATTTGTTGAGAGGGATGAGCAAATGGGCGCACTGATCCCGATACGCCAAGGGAACCCTAGCCTCCACCATCTCCTCCTGCGTCGCTATCATCTTCTTCGACGATCCTTCAACTTCCATCGTTCTTTCTCCCACACACTCTTCTCTGTGTATCAATTTCCTCCCTCCCCAGGGTTATACTACATGCTTTTCTATATACCCTTATTCAAATTTAAAAATTAAATAATATTTAAATGAAAATAAAAAGAATAAATGTTTAATAAAAAAATGTAATCTTTTAAAATGAATTTAATTATATTTAAATTTATGATATGCTTAAAATTTAATTAAGCTTACAATAAAATTATAAAAACTCTAATGAAAATATAATTTAGTATAGTAATAGGGGAGGGGAATAATATTTTTCTAATTTTCTGATACATCTACAAATACACGAAGGTGGATAACAAATTAATTATATTTATGACGTCTTAACATAAATAAAACAATACTTATTCATGATTTTGAAGATATAAACATTTTTAACATAATTATGAAAAATAATAAAAATGATTAATTCGGTTGATATTATACTTATGGTGTTGCCATTGCACATCTATACTCCATTGCAAGGGAAGAAAATAAAATTGATGTGTCAGACAATAAATCACATTCGATCAAAACTAAAATCGTGTTATAATTTAGAAATAAAAGGCATAATTAATTCTGTTAGGTAAGAGTGATGAAGATGAAAGAGTGCATTAGGTGAAAGCCGAGAGATCAAATGTTACAATATAAGATGTGCAAAAAAAAACAAACCTCAATTTACTTGATCCAAATAAATGAACCCAACCCAAATCGAAAATTCTATATATATATATATATATTAGACTATGTATATTAAAGATGAAAATGTACCAGAAAAATTTCCAACATGTCCGTTGTCACAAATAAACCTAACCAGAGTTACAAATCATAATTAAGTTTCATTATAACATTTTCAACATTTACGTTTTAGAATTAATAAAACTAAAAATATTATAATTTTAAATATATTATTACATAAACTTATGATATTTTTGTCTTGTCACAATCGAAATAATAATAAAAAAGACGAACAATATGAGAAAAAAAAAGTAGCTCGGGTTTATATGCAGCAGGATCAGAAAACTAGCACTTTCATTTTATTAGCTTACATACATTCCCACTGCA


Gene Sequence:
>Vu_31404(+)
ATGGCTTCTCAGATTCTCAGGACGGATGCTACCCTCCCAATCTTCTTCTTCAAAGTTATTCTTAAAACAAATCTCGAAAGGCTTGTAAGCACTCTTAGCCTCATATCTATATGTTTGTATGATAGTTCAAGTATTTGCTATTGATATATAATTACACCCTAACAAACATTTTTTTTCTTTTCTTTTGGCAGAAAATTCCCAACAAATTCACCCGCAAATATGGAGATGGCTTGCCAAATCCTTTGCTTATGAAGCTTTCAAATGGAACCGAATGGGAAGTGAAGTGGGCAAAACACAACCGTGAGGTTTGGCTGGAAAAGGGCTGGAAAGAATTTGTGCAACATTACTCCCTGGACCATGGACATTTAGTTTGCTTTAAATATGAAGGAACATCTCAGATTCATGTAATCATATTCGACCAAAGTGCAGTAGAAATAGACTATTTCTGTGGCACAGATGATGAAAATGACAACCTTGTTCAAACTGAAGACACTGCTGATGAAAACGACAACCTTGTTCAAACTGAGGACAAACCCAACATGATTTTGGACGAAGAAACACAACAGAAAGCTGAACGAATAGGGGGTAAGGATTCATTTTCTGTTTGCTTGTTATCTTTACATTTTCTGTTTCACGTGGATCAGGATTTTATGTTCATGATGTGTAGCGAGAGTTGAAACCACCAAGCATGTCATTTCACAAAAATTTCAAGATTCTTAATGGTTGAGGCTTTGAATTGCATTCCACAGGTGAGAACTATGCTCAAAGAACTTCATCTTTGAACTGGCCAACTCAAACCAGAGCACGACAAATAGCTTCCAATTTCGTCTCATGCAATCCCTTCTTCACCTTCTTCATAAAACCTTGTCATGAGAGACAATATCGTCTGGTAGGTAGAGTTAAAAATGTGAATACTTTGATTTAATCTTTGGTTCTGTTCTACATTCAGACTCTTGCAATAAAAATGTTATGCAGTGCGTTCCAGATTTGAAAGACATTATTGGGAGCAAGAAGTGTGCGGTGCTACAACTTGGGGAAAGATCTTGGAAAGTAAAGTTGTTACACAGTACCAAACGTTTTCGACAATACAGGTTCGGTGCTGGCTATTACATATTTTCGAGTGAGAGTGAATTGCAATCTGGAGATGTTTGTGTATTTGAACTGATTAGCACAAAGGATTGTGTTTTTAAAGTTCATGTTTTCAAACGCGATCACTGA