Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_31353 LG8 46775406 46778630 PREDICTED: transcription factor TGA2-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09132 Signal transduction   C 04075 Plant hormone signal transduction [PATH:ko04075]
SNP Position Effect Amino acid change
T/A 46775450 stop_gained p.Arg447*
G/T 46775478 synonymous_variant p.Leu437Leu
A/G 46775482 missense_variant p.Leu436Pro
G/A 46775875 missense_variant p.Ser383Phe
A/G 46775964 synonymous_variant p.Ser353Ser
C/T 46776006 synonymous_variant p.Thr339Thr
G/C 46776371 missense_variant p.Ser249Trp
T/C 46776396 missense_variant&splice_region_variant p.Ile241Val
T/C 46776536 downstream_gene_variant
A/G 46776620 downstream_gene_variant
C/T 46776676 downstream_gene_variant
G/A 46776790 downstream_gene_variant
T/C 46776793 downstream_gene_variant
T/G 46776898 missense_variant p.Asn229Thr
A/T 46776971 downstream_gene_variant
T/C 46777013 downstream_gene_variant
C/T 46777020 splice_region_variant&intron_variant
G/A 46777095 synonymous_variant p.Tyr196Tyr
G/T 46777174 downstream_gene_variant
T/A 46777178 downstream_gene_variant
T/C 46777187 downstream_gene_variant
G/T 46777195 downstream_gene_variant
C/T 46777196 downstream_gene_variant
T/C 46777287 downstream_gene_variant
C/G 46777385 splice_region_variant&intron_variant
A/T 46777391 downstream_gene_variant
G/C 46777433 downstream_gene_variant
A/G 46777467 splice_region_variant&intron_variant
G/A 46777582 splice_region_variant&intron_variant
A/G 46777769 downstream_gene_variant
A/T 46777770 downstream_gene_variant
T/C 46778007 missense_variant p.Thr93Ala
C/A 46778008 missense_variant p.Glu92Asp
C/T 46778010 missense_variant p.Glu92Lys
C/T 46778015 missense_variant p.Cys90Tyr
G/A 46778158 splice_region_variant&synonymous_variant p.His76His
A/T 46778191 stop_gained p.Cys65*
G/A 46778209 synonymous_variant p.Val59Val
A/T 46778307 downstream_gene_variant
A/T 46778443 downstream_gene_variant
A/T 46778449 downstream_gene_variant
A/T 46778450 downstream_gene_variant
A/T 46778451 downstream_gene_variant
A/G 46778546 downstream_gene_variant
C/T 46778552 splice_region_variant&intron_variant
T/C 46778584 missense_variant p.Tyr16Cys
G/T 46778586 synonymous_variant p.Leu15Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_31353.1
MQSFNPTESESTSPLYSHSSFIHRGNDANPNPTRFSDLQHSFRQHDAVDLSSSSVFGAKSNNMAVVASNLQCGTFNTNLGGAEFGSTVVGCVETESQHMYQRGNSSATMPMGNQYVEKWADDSQHTEDTCTDIDTDDKNQCFSTVSWGNGVGDGALVVVDSQDQSKTKVKPEDQKTVRRLAQNREAARKSRLRKKAYVQQLESSRVRLAQLEQELQRARQQGVLIANGLNAERGHSVVGNGALAFDMDYARWVDEHQRLINDLRSAINSRMGDNELYVLVDGVMAHYDELFRLKSIGAKADVFHILSGMWKTPAERCFIWLGGFRSSELLKIVRNQLEPLTEEQLMGIYNLQQSSQQAEDALSQGMEALQQSLSDTLSTSSQGSSGSGNVAEYMGQMAIALGKLATLESFLHQADLLRQQTLQQMRRILTTFQAARALLVINDYVSRLRALNSLWLACPREY*


CDS Sequence:
>Vu_31353.1
ATGCAAAGCTTCAACCCAACCGAATCAGAATCAACCTCGCCACTCTATTCCCACTCTTCCTTCATTCACCGGGGAAATGACGCCAACCCAAATCCCACGCGCTTCTCTGATCTTCAGCATTCTTTTCGGCAGCACGATGCTGTTGATTTAAGCTCAAGTTCTGTGTTTGGTGCGAAGTCGAACAATATGGCTGTTGTTGCAAGCAACTTGCAGTGTGGGACATTCAACACGAACCTTGGAGGTGCAGAGTTTGGTTCGACGGTTGTAGGGTGTGTTGAGACAGAGTCTCAACACATGTATCAGAGAGGAAACAGTAGCGCCACCATGCCCATGGGGAACCAGTATGTTGAGAAATGGGCAGATGATAGTCAACACACTGAAGATACTTGCACAGACATCGACACCGATGATAAAAACCAATGTTTCTCTACCGTGTCTTGGGGCAATGGAGTTGGAGACGGGGCACTTGTAGTTGTGGACTCCCAGGATCAAAGTAAGACAAAGGTTAAACCCGAAGACCAGAAGACCGTTCGTAGGCTAGCTCAGAATCGCGAGGCAGCTAGGAAGAGTCGGCTGAGGAAAAAGGCATACGTGCAACAGTTGGAGAGCAGTCGAGTTAGGCTTGCACAATTAGAACAAGAGCTTCAACGGGCACGTCAGCAGGGTGTTCTTATTGCAAATGGACTCAATGCGGAACGAGGACATTCAGTTGTTGGAAATGGAGCATTAGCATTTGACATGGACTATGCTCGATGGGTGGATGAGCATCAAAGGCTGATCAATGATCTAAGATCAGCTATAAATTCTCGAATGGGTGATAATGAACTTTATGTTCTTGTTGATGGAGTCATGGCACATTACGATGAATTATTCAGGTTGAAGAGCATAGGGGCAAAGGCTGATGTATTTCACATACTTTCTGGGATGTGGAAGACTCCTGCAGAAAGATGCTTCATATGGCTAGGTGGATTTCGTTCTTCTGAACTTCTCAAGATAGTTAGAAACCAGCTTGAACCATTAACGGAAGAGCAGTTGATGGGCATTTACAATCTGCAACAGTCTTCTCAGCAAGCTGAGGATGCATTATCACAAGGCATGGAAGCATTGCAGCAGTCTCTTTCAGATACACTTTCAACGTCCTCACAGGGATCATCTGGTTCTGGAAATGTTGCCGAGTACATGGGTCAAATGGCAATTGCATTAGGCAAGCTTGCCACACTTGAGAGTTTCCTTCATCAGGCTGATCTCTTGAGGCAACAAACTCTGCAACAGATGAGACGAATTCTGACCACTTTCCAAGCTGCGCGGGCACTACTCGTCATAAATGATTACGTTTCACGACTCAGAGCTCTTAATTCTCTATGGTTAGCGTGCCCAAGAGAGTACTAG


Promoter Sequence:
>Vu_31353::LG8:46778630-46780630(-)
ACTCCACGATTATTTATCATTTATTTAAAGGTTCATCTCTAATAAATAACCATTCTTTAATCTAAGTATTAAAAACAATTAGTCACTTAATATTCTTATGCTGATTTCCTAACAAGGTTAATAATATATTTCATTTTATCAATAGAAAAAAAAAATCTTTATAGATGATAGATGATGATTTGGTTTCAGATGTTTGGTCAATCTGATTACACAAAACCAATATTATTTTTAAAGGTGAGCATTGTATGGAGGGACAACATACACACTTAGATATTCACACTGGTAAGATATTGTTCGTTTTGGGCTAAGTTCTCACGGATTTATTTTTGGTACCACTCCAAAAGGCCTCTTACCAATGGAGATATATTATGTGTATATAAACTCATGTTCATCTCTTGTTTTATTGTTTGTACCCAACATCTTCCCCTCAAACAAAGGACTATGGTTATCCTACCTCCACCTCTCGTAGAAGTGAAGTATTTTCTTATCCTCGAGTACACCATGGTCAACAATGAGCATCTCTTTGCCCTCTTTCACGATCCATAGTCACAACACTAAGCATCTCTTGCCCTCCACCTCTCATGATTTATATAGCTATCTGTCGCTGGCCACCTGTCAGAGCTTCATCTGGTCATGGAAGGACGTACTTGTCTGAGTCCGGTCACCAGACCTGAACCATGGGCTTTGATACCATTTGTAGGGAGGGACAACATACACACATAGATCTCCACACTGGTAAAATATTGTCCACTTTGGACTAAGTTCTCACAGATTTGCTTTTGGTACCACTCCAAAAGGCCTTTTATCAATTGAGGTATCTTACGTGTATATAAACCCATATTCACCCAACAAGCTAAGTAAGAGTTAATTTATAGATTTTATTTCATATCTTAGTATTGGTTATGTGCAAGTATGAGAAACACCTTTTATAATTTATTATGCATTGTATTATAACCTTATAGTTACATCTAACTTTATCAATATTTATTACTCTTTCAGAAAAATCCACATACTAAAAAAAAACCCACTTGATCATTATACGCATTTAAATTTTTGTAGGAAAAAAAAGAAACAAAAGAGAAAAATGGAACATAAAAAAATGAGCTAAAATAAACAAAAACAAGATAATTTAAGGAAAAATAAAAAATAATTTTGTTTGCTATGTTGTTATTATTATTAAAATACTACGATTCGTAAGAAAAAATTTAAAACTTTAAGAGAACAAGTTATAAAGTAGTTAATTCAACTCTCAAATTTAGTTATAGGTACCTTATTTGGTTTCGTATCTTGTTTAAATTTTACTCCCAGGTTAATATCCTTTATTTATTTTGAAACCTATTTAATCGTTTCTATACAATAATATATTTATAACATGTGAAGTGACTTGTGTGTGCTAGTTGTTAATAATAAGTAAACAATAATGAATAAATAAAATTTAAAAATATTTTTTGTTTAAACAATTTATATTTCCATTAAATTGTACTTATTTTTCAATCGAACAATTTTTATTTTACCTCACTTTTTACCTATTTATCTTAATTTTTTCTCTCTCTTTTCCACTGTTTTTAGTTTTTTTTCTAATGTCACACATACCACTAATATACTATTTATTGAACCTATATTTATATTTATAGACTACTTATATTATTTTATTAGTAAATTTAGACCATGCTAATATAATTATCACTTAAAATTCTTATACTATCGACTTATTAAAAAAACACAAGAAAAGAATTAATTTTGTAATAAAAATAATATACTAAAGCAGAGATTATTTTAGAAATGTGTATGAATAAAATCACTGAAAGAAAAAGGTTGAAGCTTTGAAATGTGGGGGTGCTGATGCAACACTACTACATTACACTCTTCTTAAAGCTTCCTCCAACACTTTATGCTTCGAACTGCATTTCCATATTCTCTTCTGCTTCCACTTGTTTAACAACAAAACCTATCATCGCCATCATTCATGCTTTCTTTCCTAATCACTTAGCTTAGAAACA


Gene Sequence:
>Vu_31353(-)
ATGCAAAGCTTCAACCCAACCGAATCAGAATCAACCTCGCCACTCTATTCCCACTCTTCCTTCATTCACCGGTAAATTGCATATTACAATCTGCAAGAACCATTCACATGCACCAACAAGTGCTTCTGTTGATTTATTTTTCTTTTGGTATTACAAATATAATGTTTTCTAAAACAGAGTTTCTCTGTTTTTCTCTGTTCTGTAACAGGGGAAATGACGCCAACCCAAATCCCACGCGCTTCTCTGATCTTCAGCATTCTTTTCGGCAGCACGATGCTGTTGATTTAAGCTCAAGTTAATACTCTCTTTCAATGTCTTCACCATTATACAAACACACACTTACACACAAAATGGTTCCTTCTTGTGTAGGAATTTTAATTTTTAACTATATTATATCCAGGTTCTGTGTTTGGTGCGAAGTCGAACAATATGGCTGTTGTTGCAAGCAACTTGCAGTGTGGGACATTCAACACGGTACCGGTTCTTTCTCTCTTGTTTTCCTCTATAGTTATAGACTTTTTTTTTTTTCACGCGTGCCTTGTCTATTTTGGGTTCGGACGAAAATGTTTTTGTAGAACCTTGGAGGTGCAGAGTTTGGTTCGACGGTTGTAGGGTGTGTTGAGACAGAGTCTCAACACATGTATCAGAGAGGAAACAGTAGCGCCACCATGCCCATGGGGAACCAGTATGTTGAGAAATGGGCAGATGATAGTCAACACACTGAAGATACTTGCACAGACATCGACACCGATGATAAAAACCAAGTGGGTTTCTGAAAAATTATTTTCTTGCTGTTACTGTTATGTGTCGGAAATGGAAAGTCATTGTAAAGGCTTAAATGGGTTTTTGTCACTATCTTTTTCTTTTTCTTTTCTTCTACTTTCTGTCTGTTTCTCACACCTACTTAATCAACTTGACTACTAAAAAGTATAACATCAGTTGGATTTTTTGCATCTCTATCAGTATAAATGTTTTGTCCAAAAAGATGAAGACGTATTTAACGGGATAAAATGGAATGTGAATTGCTGATTTTAATGTATTTTTTGTTCACAGTGTTTCTCTACCGTGTCTTGGGGCAATGGAGTTGGAGACGGGGCACTTGTAGTTGTGGACTCCCAGGATCAAAGTAAGACAAAGGTTAAACCCGAAGACCAGAAGGTTGTTTGATGCTAGTTTTGCTACCAAATCCTATGTTTACCATTTCCTGTTTCGTTGCTGATAGCTTTATTTTTGTGAATGTCTTCCGTTAGACCGTTCGTAGGCTAGCTCAGAATCGCGAGGCAGCTAGGAAGAGTCGGCTGAGGAAAAAGGTAATTGCTCAAGGAAGAAGTTTATCCTAATTGACTCTTGATTGAGCAGTTTATTGCTGAGTTTCGTTATATCAGTTAGTTTCAATGTTATTAGTTTTTGTTTCTCCCTGTATGTGTAACAATCGCTGGGAGTAAATTAACAAGTTCATTTTTCAGATAATTCTAAGAATCTTGTTAATGGAATATATTTGATTGGTATATATGGTATGATCATGAACAGGCATACGTGCAACAGTTGGAGAGCAGTCGAGTTAGGCTTGCACAATTAGAACAAGAGCTTCAACGGGCACGTCAGCAGGTGTAAGATATTAAAGGTTTCTGGTAGATAATTTGCATCCATAACACAAATTTTCTGTTATCTTAATTGCTTTTTTATATGGGTTGCTACTTTCTCCAGGGTGTTCTTATTGCAAATGGACTCAATGCGGAACGAGGACATTCAGTTGTTGGAAATGGTAATATGAAAGATTATTTTTCATTTGTAGTGGCAGAACATTGGTAATTGACTATTGAGTACATGTTTTCAAACTCAAAACTACGGTACTGTTTATATATGACAATGATTATTGTTTGAAGCTCACCCATGGCTAAGAAAGAAGCTAAAATAGTTGGTTTTATAGATACAACCTGTATACAGTAAATTTGACATAGAAATTGTCATGATATTGGTAGAATTGAAGCCTCAATCTAGGTAATAACATCAATCATCTGCATGCCTAATTTTCTTCTGATGCTTAAAAGATAATGGCTGGGTAAGGCAAAAGGACTAGTTATTGTTATTTGTAATTTCATCCATACATATTGAATTATAAGTATTTGACATGGCTTAGGTTTGTAATATAAATTGTAATTTCATGAGTGACTATTATTACAAACTAGGCAGTTGAATTTGATTTTGTGATGATTTTTTTATCCTCAAGGAGCATTAGCATTTGACATGGACTATGCTCGATGGGTGGATGAGCATCAAAGGCTGATCAATGATCTAAGATCAGCTATAAATTCTCGAATGGGTGATAATGAACTTTATGTTCTTGTTGATGGAGTCATGGCACATTACGATGAATTATTCAGGTTGAAGAGCATAGGGGCAAAGGCTGATGTATTTCACATACTTTCTGGGATGTGGAAGACTCCTGCAGAAAGATGCTTCATATGGCTAGGTGGATTTCGTTCTTCTGAACTTCTCAAGGTGATTGACCATTTCAGATACTGAAATTTAGTGTCCATAGAATATTCTGTTCAGTTGTTGATGACTAATAGGCACATTTCTTTGGATAATCAGATAGTTAGAAACCAGCTTGAACCATTAACGGAAGAGCAGTTGATGGGCATTTACAATCTGCAACAGTCTTCTCAGCAAGCTGAGGATGCATTATCACAAGGCATGGAAGCATTGCAGCAGTCTCTTTCAGATACACTTTCAACGTCCTCACAGGGATCATCTGGTTCTGGAAATGTTGCCGAGTACATGGGTCAAATGGCAATTGCATTAGGCAAGCTTGCCACACTTGAGAGTTTCCTTCATCAGGTAATAACCTCACTAATCTTAGTCACAGCATCTCTAATACTAATATTTAGCACTTATTGCAACATTATAATCTTTATTTGTAGTTTAAGTTCTCACTTTCAATAGTAAAAATTCCACATTATGCTTATGAGTTTAGTTTCTATGTGTCTTTACTTTGTCAATTATCACTGTGATCACAACCTTTGAAAATTTGATGGAAATGTATTGAGAGAGTATAGATGTTTCCTTTTTCAGGCTGATCTCTTGAGGCAACAAACTCTGCAACAGATGAGACGAATTCTGACCACTTTCCAAGCTGCGCGGGCACTACTCGTCATAAATGATTACGTTTCACGACTCAGAGCTCTTAATTCTCTATGGTTAGCGTGCCCAAGAGAGTACTAG