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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_31308 LG8 46221417 46224921 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 46221424 stop_gained p.Trp3*
A/T 46221468 missense_variant p.Ile18Phe
A/T 46221479 synonymous_variant p.Val21Val
C/T 46221484 missense_variant p.Ala23Val
G/C 46221496 missense_variant p.Arg27Thr
T/A 46221545 synonymous_variant p.Pro43Pro
C/A 46221567 missense_variant p.His51Asn
T/G 46221642 missense_variant p.Ser76Ala
A/T 46221651 missense_variant p.Thr79Ser
T/C 46221664 missense_variant p.Val83Ala
C/A 46221686 synonymous_variant p.Thr90Thr
A/T,* 46221690 missense_variant p.Ile92Phe
T/A,* 46221691 missense_variant p.Ile92Asn
T/C,A 46221695 synonymous_variant p.Ile93Ile
A/G 46221711 missense_variant p.Lys99Glu
C/T,G 46221717 missense_variant p.His101Asp
G/A 46221748 missense_variant p.Ser111Asn
C/T,* 46221760 missense_variant p.Thr115Ile
A/T 46221769 missense_variant p.His118Leu
T/A 46221771 missense_variant p.Ser119Thr
A/G 46221805 missense_variant p.Asn130Ser
G/A 46221826 missense_variant p.Ser137Asn
C/A 46221828 missense_variant p.Gln138Lys
C/G 46221833 synonymous_variant p.Ser139Ser
A/T 46221886 missense_variant p.Tyr157Phe
A/G 46221888 missense_variant p.Asn158Asp
A/T 46221909 missense_variant p.Asn165Tyr
C/T 46221955 missense_variant p.Pro180Leu
T/C 46221960 missense_variant p.Ser182Pro
G/C 46221984 missense_variant p.Gly190Arg
A/G 46222023 missense_variant p.Thr203Ala
C/T 46222025 synonymous_variant p.Thr203Thr
G/T 46222029 missense_variant p.Ala205Ser
T/G 46222052 missense_variant p.Asn212Lys
C/G 46222071 missense_variant p.Arg219Gly
G/T 46222074 missense_variant p.Asp220Tyr
C/A 46222081 missense_variant p.Thr222Lys
C/A 46222095 missense_variant p.Leu227Ile
G/T 46222105 missense_variant p.Arg230Met
G/T 46222172 upstream_gene_variant
A/T 46222274 upstream_gene_variant
C/G 46222284 upstream_gene_variant
G/A 46222329 upstream_gene_variant
C/T 46222343 upstream_gene_variant
T/G 46222367 upstream_gene_variant
A/T 46222398 upstream_gene_variant
T/A 46222429 upstream_gene_variant
T/C 46222437 upstream_gene_variant
A/T 46222457 upstream_gene_variant
A/T 46222470 upstream_gene_variant
T/C 46222501 upstream_gene_variant
G/A 46222508 upstream_gene_variant
A/C 46222516 upstream_gene_variant
T/G 46222520 upstream_gene_variant
A/G 46222535 upstream_gene_variant
T/A 46222572 upstream_gene_variant
T/C 46222577 upstream_gene_variant
T/A 46222592 upstream_gene_variant
C/G 46222595 upstream_gene_variant
A/G 46222600 upstream_gene_variant
C/A 46222601 upstream_gene_variant
C/G 46222609 upstream_gene_variant
G/A 46222621 upstream_gene_variant
G/A 46222625 upstream_gene_variant
T/C 46222650 upstream_gene_variant
T/C 46222709 upstream_gene_variant
G/A 46222734 upstream_gene_variant
C/G 46222748 upstream_gene_variant
T/A 46222760 upstream_gene_variant
C/T 46222781 upstream_gene_variant
A/G 46222787 upstream_gene_variant
C/G 46222838 upstream_gene_variant
C/T 46222844 upstream_gene_variant
T/C 46222850 upstream_gene_variant
C/G 46222851 upstream_gene_variant
A/T,* 46222868 upstream_gene_variant
A/G 46222870 upstream_gene_variant
A/G 46222871 upstream_gene_variant
C/T 46222874 upstream_gene_variant
T/A 46222884 upstream_gene_variant
A/T 46222891 upstream_gene_variant
A/C 46222909 upstream_gene_variant
C/A 46222913 upstream_gene_variant
A/G 46222950 upstream_gene_variant
T/C 46222951 upstream_gene_variant
C/T 46222958 upstream_gene_variant
C/G 46222972 upstream_gene_variant
A/G 46223013 upstream_gene_variant
T/G 46223014 upstream_gene_variant
C/A 46223031 upstream_gene_variant
T/C 46223037 upstream_gene_variant
A/C 46223040 upstream_gene_variant
A/C 46223071 upstream_gene_variant
C/T 46223076 upstream_gene_variant
A/C 46223121 upstream_gene_variant
A/T 46223122 upstream_gene_variant
A/G 46223153 upstream_gene_variant
C/T 46223160 upstream_gene_variant
G/A 46223171 upstream_gene_variant
G/A 46223212 upstream_gene_variant
A/G 46223225 upstream_gene_variant
T/A 46223231 upstream_gene_variant
T/A 46223316 upstream_gene_variant
G/T 46223330 upstream_gene_variant
A/G 46223334 upstream_gene_variant
T/A 46223343 upstream_gene_variant
A/T 46223346 upstream_gene_variant
A/G 46223377 missense_variant p.Ser239Gly
T/A,* 46223397 splice_donor_variant&intron_variant
A/T 46223440 upstream_gene_variant
G/T 46223457 upstream_gene_variant
C/A,* 46223474 upstream_gene_variant
G/A 46223572 upstream_gene_variant
C/T 46223839 missense_variant p.Leu310Phe
C/T 46223848 missense_variant p.Arg313Cys
T/G 46223886 upstream_gene_variant
A/T 46224113 synonymous_variant p.Ile364Ile
T/A 46224114 stop_lost p.Ter365Argext*?
C/G 46224197 upstream_gene_variant
G/C 46224241 upstream_gene_variant
T/C 46224303 upstream_gene_variant
T/C 46224328 upstream_gene_variant
A/G 46224432 missense_variant p.Ile376Val
G/A 46224501 missense_variant p.Asp399Asn
T/G 46224576 missense_variant p.Tyr424Asp
A/C 46224711 missense_variant p.Ile469Leu
G/C 46224755 missense_variant p.Trp483Cys
G/T 46224756 stop_gained p.Glu484*
A/C 46224757 missense_variant p.Glu484Ala
C/G 46224776 missense_variant p.Cys490Trp
C/A 46224867 missense_variant p.Arg521Ser
G/A 46224887 synonymous_variant p.Leu527Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_31308.1
MVWLLFFKSLIVFLSQLILIVSAQNGRCPPYSDCGFLGRIRFPFTTTEQQHCGLLAIHGCQQLPPSAPKTIKLGTSTSTSYSVLRVEPRTIIISDDEQKRHLRNRSCKAFSKNVTLPHSSPLASFVNKYNITIFRCSQSLKPSLSKDFHKYSNCSEYNIFYGNPNILTPPGFQWPSSLAPCSTVQLAVEGSPTDDPFQFVISTTAIEVQLSNECERCLRDRTGRCLLDIRKIPIAPQSSGIWHGSIGMSATVIIVLLILWNRKPKCLFGFFSNRNPVSASIYFGVPVFTYKDLVIATKSFDRSRELGEGGFGIVYYGKLQDGREVAVKRLYEHNYRRVEQFMNEIKILTRLRNKNLVSLYGCTSYDSRTPGYVDPEYHRCYQLTNKSDVYSFGVVLIELISSMPAIDLNRHKDEINLADLAVRNIHKNAIAELVDPSLGFESNDDVKRQIIAVAELAFQCLQQDKDLRPSMDEVLEVLKRIESGKDEAGHAQDEEPSSPSSVDHDEVKLLMNMKLPPSPRAVTDKWNCRSTSPNVSGQ*


CDS Sequence:
>Vu_31308.1
ATGGTCTGGCTTCTTTTTTTCAAATCGCTAATAGTATTTTTGTCACAGCTTATTCTGATTGTATCAGCTCAGAATGGAAGGTGTCCACCATATTCGGACTGTGGATTTCTTGGGCGCATTCGGTTTCCTTTCACAACCACCGAGCAACAACACTGCGGCTTATTGGCTATACATGGCTGTCAACAACTTCCTCCTTCCGCTCCCAAAACTATCAAACTAGGCACCTCCACATCAACCTCGTACTCTGTTCTAAGGGTAGAACCTCGTACCATAATTATTTCAGATGATGAACAAAAACGTCATTTGCGAAACAGAAGTTGCAAAGCGTTCAGCAAGAATGTTACTCTTCCTCACTCCTCTCCTTTAGCTTCTTTCGTCAACAAATACAATATCACCATCTTCAGATGCAGTCAGTCCCTGAAACCCTCCCTTTCCAAGGATTTTCATAAATATTCAAACTGTTCTGAGTACAACATCTTCTATGGCAATCCAAATATACTAACTCCTCCGGGTTTCCAGTGGCCCAGCTCTTTAGCACCATGCTCAACCGTTCAGCTTGCTGTAGAAGGAAGTCCTACCGACGACCCCTTTCAATTTGTAATCAGTACCACTGCTATTGAAGTTCAGTTATCGAATGAATGTGAAAGGTGTCTTCGTGATCGAACAGGACGATGTTTACTTGACATAAGGAAAATTCCTATTGCGCCACAGAGCAGCGGAATTTGGCATGGAAGTATTGGAATGTCGGCTACTGTTATCATTGTACTACTAATACTATGGAACCGCAAACCCAAATGTTTGTTTGGTTTCTTTTCAAATCGAAACCCAGTAAGTGCGAGTATCTACTTTGGGGTCCCTGTCTTCACTTATAAGGATCTTGTAATAGCAACAAAAAGTTTTGATCGTTCAAGAGAACTGGGAGAAGGAGGCTTTGGGATCGTTTACTATGGAAAACTCCAGGATGGACGTGAAGTTGCTGTGAAGCGGCTATATGAGCACAACTATAGGAGAGTAGAACAGTTCATGAATGAAATCAAGATCCTCACACGCTTGCGCAACAAAAACTTAGTGTCTCTCTATGGCTGCACTTCATATGACAGCCGCACCCCTGGCTATGTTGATCCTGAATATCACCGCTGCTACCAACTTACCAACAAGAGTGATGTGTATAGTTTTGGGGTTGTGCTTATTGAGCTGATATCATCTATGCCAGCAATTGATCTGAACCGACATAAGGATGAAATAAACTTGGCAGATCTAGCAGTAAGGAATATTCATAAAAATGCAATTGCTGAGCTGGTGGATCCTTCCCTTGGTTTTGAGTCAAATGATGATGTTAAAAGACAAATCATTGCAGTAGCAGAATTGGCTTTTCAATGCTTGCAACAGGACAAAGACTTGAGACCATCCATGGATGAAGTGTTGGAGGTGCTGAAAAGAATAGAAAGTGGGAAGGATGAAGCAGGGCATGCTCAGGATGAAGAGCCATCATCACCATCTTCAGTAGATCACGATGAAGTGAAATTGTTGATGAATATGAAGTTGCCACCTTCGCCAAGGGCCGTGACAGATAAATGGAACTGTCGCTCTACCAGTCCTAATGTTAGTGGTCAATAA


Promoter Sequence:
>Vu_31308::LG8:46219417-46221417(+)
ATTTTATTTACAAACTAATTTTATGAAATTAAATTAAATTTAAAGTTGATATTTTAACATAATATTAAAACTATGATAATAACATTATATAATAATAACATCAATCATATTAAAAATTTTAAAAATATTGAGATAAATAAAAAAAAGTAATAAAAATTTATTAAAAATATCTAAAATTATTAAGAATTTAAAATTTAATTAATTAATTTTTTATGAACTTTTGTTGTTAAAATCTTTTTTTTAATATTATTTATTTTATTATAATATTTTTTAAAATTTAAACAATGAAATGACATTTTGTTGATTTTATACACAAATACTTTATTACGATTAAAATTTTAATTTAGTTTAATTTGTTATGTTGGATAAGCGTAATATGTTTTTTGTTCTTGTTTAATAATAATTCAGTATAACAAATTTAAATTACAATCATTAGGGAGTGATCCTTTCTTTAATTTTCTTGTGTTTTATTTTATAACTTTGATCAAACCCATAATTAACTTCCCGCGTCGTGTGCATCATGGAATGTGGACTTTTTTAGCTAAGAATTAACATCAAAATCAGCGTTCACTTAATTTCTCTGCACATTACTTTTCTTAGTAGTTCCATTTTGTCTCGTACAATAGACTATCTCACTCCCAAAAGGTGACTTTGAAAACGTCAATGACAGAGTCTTCTCTTTCTGTCTTTTGTTTTCCTCCATCAAGCAAGGAAACATCTCTAAAATGATGTGCACTTTCATTAATATTTAGCTTTACAATAATTAATTTTGTACTGATTATAAATTTGAACCACTAATTAAGCAATATATTTATAAATTTTCTAAAATATGTAAAAGGGTAAGAAGATATTATATTGAAATTATTAAGGATAGAGTTTATGAATTTAACGAAGTAATCTTCATACATTTAATATAAGTTATATGTGGTAACTTTTCCTATTTTAATTATCTCATCTAAAAGATTTTGTCACACCCGATCTCTAGTGGTGTATACCCCTACTTGTGTTTGTATGTGTTTTATTATTATTTTGGTATCAATTAATTAATTTTAATAAAAAATATAAAAACGTAATAATGAAAACATGATATTATAAATAAATAAATATGTTCGTAGTATCTAAATTTAAATATGAAATTAAAATTTATTCTTTTTCAAATTTTTATATATTTTAACCTTCAAAATTTTAAAAATAAATAAATATATACCAAACGAGGCATTTCACTCTCTAATATATATAATAACTATTGAACAATTTGTTTTTATCGAGGAAGCTATAATAAAAATGACTTATTTTAAATTTTCATTTCTCTAAAATAATACAGAGAAATAATCCTAAATTATATTCACATATTATCTTTATAATTAAAAATAAGTATAGAATATATTTGTAGTAAAAGAACAATCTCATTACATCTGTCCTAGTATTCAAACAGAAATGAATTATTTTTCATCAATCGCATACATATTAATTATATTTAAAAATGAATTCAATATATTTAAAACTAGTGCAGTATTAATATTTACGTGAAAATCTGTCTTAATATATGAGTTTATTGATCCAAACACCAATATTATCGTCAAGCCACGATAAACAAAAGGATCATTCTGGTCTTTTAAGTAAAAAAGAAAAGTTATACACCAAATGTTTTAGTTGTCTTAGTTATTGACTGATACCAAGTGATTATCATTAAATAAAACTGCATTCATAAATATTCAGATCACTCAATACGAAAATTAATTAAATCGTCATTTTCGAAATCAAGTAGCGTATAAAATCCTTCAAAACGAAAAAATGTTTTTTTGTGGACTGTTTGAAAAACAAGGTGCAGCACTTTTTGACTGTGGGTTTATATTACTGTCGTTGGTTATTCTAAATTCTCAAGTGTCCGACTCCTCTCTTTTCAAAGCAGGGGTTTTCTTTTCTATCGTGCATTTATTGTTTTCCTTTCCAAAACCTTTCCGTGATTTCATATTTGATTGACAATTCGATATTCCTAA


Gene Sequence:
>Vu_31308(+)
ATGGTCTGGCTTCTTTTTTTCAAATCGCTAATAGTATTTTTGTCACAGCTTATTCTGATTGTATCAGCTCAGAATGGAAGGTGTCCACCATATTCGGACTGTGGATTTCTTGGGCGCATTCGGTTTCCTTTCACAACCACCGAGCAACAACACTGCGGCTTATTGGCTATACATGGCTGTCAACAACTTCCTCCTTCCGCTCCCAAAACTATCAAACTAGGCACCTCCACATCAACCTCGTACTCTGTTCTAAGGGTAGAACCTCGTACCATAATTATTTCAGATGATGAACAAAAACGTCATTTGCGAAACAGAAGTTGCAAAGCGTTCAGCAAGAATGTTACTCTTCCTCACTCCTCTCCTTTAGCTTCTTTCGTCAACAAATACAATATCACCATCTTCAGATGCAGTCAGTCCCTGAAACCCTCCCTTTCCAAGGATTTTCATAAATATTCAAACTGTTCTGAGTACAACATCTTCTATGGCAATCCAAATATACTAACTCCTCCGGGTTTCCAGTGGCCCAGCTCTTTAGCACCATGCTCAACCGTTCAGCTTGCTGTAGAAGGAAGTCCTACCGACGACCCCTTTCAATTTGTAATCAGTACCACTGCTATTGAAGTTCAGTTATCGAATGAATGTGAAAGGTGTCTTCGTGATCGAACAGGACGATGTTTACTTGACATAAGGAAAATTCCTATTGCGCCACAGGTATGCAAATTTTATTTTTTGGTTAAAGAATGCAGAGGAGGAGGGGATTCAAGTTCAGGGATTGCCATAACCCTCAACTAAAGGTTTCAAGCAAATGAATTTTCAATAAAAGAGTATCAGAAAACATCAACTTCAATAATTGTTTTATATTTAGTACACACATAACAGGGTACACACAACTAGCCCCATTCAAAGTTTTCTGCCTTATATCATAACTTGCAGAAACTTATCTTTATAAATATTAATAACGCATTTCAATACACTTTTTCTATTTATAAATAACTTATTTATTATTAAAAAATTAAAAAATATCGCAATATAATTATTTTATTTATAAATACAAATATAATTAATATTATTTATTTAGTTTAGCTAACAACGCATACACATAATGATGGATACGTGATACTTGATACATGGTGTGGGATGAACTAAGTATTTTAGTCCATTAGTTCGTCTTGTATTATCCGCAACCCATGCACAACAATAATGGGTTAGTTCATATTTTGTTTGTATAATCCGTATTTACTTAAATCCTTAAAATATGATATTTTAAATATTTTAACATAGAAACCATGTAATCCTAGTATTTTAAAATATTTTAATGGATAAAGAAAATACTAAAATAAATATTTTCTTGTACCAATCCTCAACACCATAGATCAAATGTTATGCAAAACGGATAAGAGAAATTAATTTGTATTTCTTATCCGAGTCAGATCTCCTTTTACAGGTTATATACAAGACAGACTAAAATAAATAGACCGACCCACATTATTATATCTCCATACTTATAACAATATTTAGGTAAATTTTACTAATATTGTATTCAAAATTCTTATACCATAATATTCATTTATTTTTAATCACTTATGCAATGAAACTATTCATATTTTTTAAGTCCACCCTTGAAGAAAAGATGAATAAATTACATTTTTCTCTTATTTTCGGATTATGTCCAATACATTTTTCTAAAAAACCTATAAAATGTCTAATGACTGTTTTAACAGTGTTATATTTACATTAACACCTCAATATATATTGTACTAATGTCTATTTAATTGTTGTTAAAATATTATAACAAGTAGTTGCCCCGGAACCATTAAAAAAATAAGAATATAATGTGCATCTTAAAAGAACTAGAGAAGTATGCACTGTAATTTAGTAAGAAATGGTATAGGTGATCAATTTTAATTTAACTTGATCATTTGCTCTTAAATAATTGGCCCTTTGATTTCTATTGCAGAGCAGCGGAATTTGGCATGGAAGTTAGGAGTAGGTAACATTTCTTCGTTTCTTATACGCCAATCTGAGCCCCATGTTTTCAATGTCTGAATGGTTTTTTTCTTCCACCCCCATTGATTTCCTATTCGTTTCTCATTTTAACTTTCCATGTCAATGCTCGAGGACAGAGTCATAGACTAGCAATTAGTCAAACAGTTTCGAATTTCACATTTACACGTTCTACAAGATAATCTTAAACTGATAGGAGTTCTCCTCTTTGATGGGTTCTAGGTATTGGAATGTCGGCTACTGTTATCATTGTACTACTAATACTATGGAACCGCAAACCCAAATGTTTGTTTGGTTTCTTTTCAAATCGAAACCCAGTAAGTGCGAGTATCTACTTTGGGGTCCCTGTCTTCACTTATAAGGATCTTGTAATAGCAACAAAAAGTTTTGATCGTTCAAGAGAACTGGGAGAAGGAGGCTTTGGGATCGTTTACTATGGTATGTACCAAACAACTACACCTTTCTTTGTACAAAGTAATTCAATGTGTTTTCTTTCACTTTCTCTGTTCTCAAATAACTCTTTCTTTCATCTCTATTTCAACAACTAGGAAAACTCCAGGATGGACGTGAAGTTGCTGTGAAGCGGCTATATGAGCACAACTATAGGAGAGTAGAACAGTTCATGAATGAAATCAAGATCCTCACACGCTTGCGCAACAAAAACTTAGTGTCTCTCTATGGCTGCACTTCATATGACAGCCGTGAACTACTGCTTGTTTATGAATACATTTCAAATGGAACTGTGGCCAGTCACCTCCATCGTCGTGAATCAACGACTCATGCCTCTTTGCCGTGGCTTATCCGAATGAAAGTGGCCATTGAGACTGCTACTGCATTGGCCTATCTCCATGCCTCTGACATCATTCACCGCGATGTCAAAACTAGCAACATTCTGCTTGACGACACTTTCTGTGTTAAAGTTGCAGATTTTGGATTGTCGAGACTGTTCCCTGTTGATGTCACCCATGTTTCCACTGCTCCACAAGGCACCCCTGGCTATGTTGATCCTGAATATCACCGCTGCTACCAACTTACCAACAAGAGTGATGTGTATAGTTTTGGGGTTGTGCTTATTGAGCTGATATCATCTATGCCAGCAATTGATCTGAACCGACATAAGGATGAAATAAACTTGGCAGATCTAGCAGTAAGGAATATTCATAAAAATGCAATTGCTGAGCTGGTGGATCCTTCCCTTGGTTTTGAGTCAAATGATGATGTTAAAAGACAAATCATTGCAGTAGCAGAATTGGCTTTTCAATGCTTGCAACAGGACAAAGACTTGAGACCATCCATGGATGAAGTGTTGGAGGTGCTGAAAAGAATAGAAAGTGGGAAGGATGAAGCAGGGCATGCTCAGGATGAAGAGCCATCATCACCATCTTCAGTAGATCACGATGAAGTGAAATTGTTGATGAATATGAAGTTGCCACCTTCGCCAAGGGCCGTGACAGATAAATGGAACTGTCGCTCTACCAGTCCTAATGTTAGTGGTCAATAA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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