Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_31202 LG8 45274513 45276196 PREDICTED: transcription factor bHLH113 isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, RNA polymerase II-specific, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, protein dimerization activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
C/T 45274800 synonymous_variant p.Asn96Asn
T/C 45274819 missense_variant p.Ser103Pro
T/A 45274945 stop_gained p.Leu108*
A/G 45275116 upstream_gene_variant
T/C 45275140 upstream_gene_variant
T/A 45275338 upstream_gene_variant
A/G 45275368 upstream_gene_variant
C/T 45275589 upstream_gene_variant
G/T 45275597 upstream_gene_variant
A/G 45275667 upstream_gene_variant
C/G 45276049 missense_variant p.Asn214Lys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_31202.1
MDPKDEFELTGTTFSQLLFGDDLDATPALPLPHHHCSYDHHTLSASPLFSFHKPPKMLCFGNHQTQPHIPPTIVTPQKSVITSSDSSSASSSNHTNTAFTSLSKSTSLQKKRNGLGQEPVTKVGVGGQRLTKKTKAENPTSTGHAKRKEKLGERIAALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQSLSSSHHQHQHGDGENNEEEVKKDLRSRGLCLIPVGCTVHVASSNGADFWSPGAIGNKVSPSGKK*


CDS Sequence:
>Vu_31202.1
ATGGACCCCAAGGACGAATTTGAACTCACAGGGACCACTTTCTCTCAGTTACTATTCGGAGATGATCTTGATGCAACACCTGCATTGCCTCTCCCTCACCACCACTGCTCTTACGATCACCACACCCTCTCCGCTTCGCCTCTTTTCTCCTTTCACAAGCCACCCAAAATGCTATGCTTTGGAAACCATCAAACCCAACCCCACATTCCTCCCACCATCGTCACCCCTCAGAAATCTGTCATCACTTCCAGTGACTCCTCTTCTGCTTCCTCCTCCAACCACACCAACACCGCCTTCACTTCCCTATCCAAGTCCACTAGTTTGCAGAAAAAGCGGAATGGGTTGGGACAAGAACCAGTCACCAAGGTGGGTGTTGGAGGCCAGAGACTAACTAAAAAGACCAAGGCAGAGAACCCCACCTCAACCGGACATGCAAAGAGGAAGGAGAAGCTTGGGGAAAGAATTGCAGCGTTACAACAGCTTGTTTCTCCCTTCGGCAAGACAGATACAGCATCGGTGCTTCACGAGGCCATGGGATATATAAGGTTTCTTCACGACCAAGTTCAGGTCCTGTGCTCTCCTTACTTGCAAAGCTTGTCATCGTCACACCACCAACACCAGCACGGTGATGGAGAAAACAACGAAGAGGAAGTGAAGAAGGACTTGAGGAGTAGGGGTCTGTGCTTGATCCCAGTGGGATGCACCGTACACGTGGCGAGTAGCAACGGTGCTGATTTTTGGTCACCCGGTGCAATAGGGAACAAAGTTTCACCATCAGGGAAGAAGTAG


Promoter Sequence:
>Vu_31202::LG8:45272513-45274513(+)
AAAAAGATTAAATAAACCATATTAATATATATATATATATATATATATATATATATATATATATATATATATATATAACTTTAGTATAATATATTAAATTTTAGTTAACAAAAATATTCTTATATATAATGGGTTTTAAGTTTTAAAGTGAATGGTATTTGAATAATTTTATTTTTAAAATTAAAAAAAATAAGAAACTCTCAAAATCTTTATTCACTTCTCTTATCTCATTTCTCTCAACTCTTTATCTTTTATTTTTTTCATTTCTCATTCTTCATTCCTCTTAACTCTTTATCTTTTATCTCTCTCATTCCAACATTCTTTCTGGTCATTTCCTTAAATCTGTTTTTCATTAACATCACCAACACTTATATTATGGGTAGTAAAAAGGAAAGCCTATAGGCTGCCCCTAACCCATAGGGTTTTGAGGATATTTAGTCTTGTGAGCTTTTCTAACAAAGGGCCTTTTTGACCATATGGGCTTTTTTTGGCCCAACCCATGTAGGTTAGGACCAAATTCTATGATAGGAGCTTATTTGACAAGTTTAGTTGCTGTGTGAATGAGAGAGAGATGACGAAGATGAAAGTGAAACAAATTAAATAAATAAGAAACATGAGTTAAAATTAGATGAGTGTTTCTGATTTCTTTTTATCTTAAAATAAAAATAAAAATTATTAAAATAGTCATATGTCTAAAATATGTCTTTTTTTTTAGTGAATGATAACTTTTTGTCAATTAAAACTTGATTGTAAACCTCTCTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTCGTGCTTAATTTTAAAAATCCTTAACGTTAAGAGACATAATTTTTTGGAGGAGAAAAATGCATGTCCCCTATAAGTTATCCACAATGTATATTAACGCGTGAAAATTAGATTTTTCTTAATTGATTTAAGGAAGAGCAAGTAAAAAACTCATAATATCGTTACTAGATTTTGATTTTGTAATTGAGTACGGGCTTATGTCAAAACATCTTCATTTTTTTAATGTATTTATTTTCAAATAACAAAATTAGGAAAAAAAAAATTAAGTAGCATCTTAAGTTGAATTAATAATTTATTTTTTATACGTAGGTCAATCATTCACTTATATTTTTTACTCAAGTATTTGTTTTTTAATAAAATTTATGTAACTATTTTCGTTAAATTATAAATTAAAGATGCCATGTATCATAATGTAATGAAAAAATTACTCCTATATTTAAAAAAATAAAACTCAGTTTTGTAAAAAAAAAAAATTACAAAAGAATCATACAACTAGATATATCTAGATATAAAGAGTAGATTACCAATTAAATATTTGTTTTATTTGACCAATTTGGAAAACTCTATTTAGTCATGATTAAACAATTGTAATAAAAAACAAAAATTGAAACCACTCTTCTGTATTATAAAAATACTGCAAAAAATATTTTATAAAAGAATGGAAAATATAATTCTTAGGTGTAGTGACAAGAAAAAAAATTGAAAAATTAGAAAAGTTTTAATTTTTTTTTTCACAGAAGGAATTTAATTGCAAAATGATGACAAATGAATTGGTACAAAATTTGAAAAGTAGAGCAGTAACTAACAGTGGTAATATTGGTTAGGTAAGAAAGAAGAGGTTGAGGGTAGGGGAAGCGGTGAGAGGAAAAAACGCGTTGGAGGGCTCAAACACGGTTTTCTCGGGCCAGGTGGGTTTGACCATTGGTTGCCGAAAACCGAAGCCGTCCTCGGAAAGAGCCCACTTTCCCACTCCACACCACACCCCACCCAGCCCATCCCTCTATTTTTGTTTCTTTCAAACATTTTTCACCAATTACTACTCTCACGACATAAACATTTACATATGTCCCTTCCACACTCTTTCTCACTCGACACTTGTTTCTTCCTTTCATTCTCTTTCTCTTTCTCTTTCGCCCCTTTCTTTCCCATTCTTTTTCCA


Gene Sequence:
>Vu_31202(+)
ATGGACCCCAAGGACGAATTTGAACTCACAGGGACCACTTTCTCTCAGTTACTATTCGGAGATGATCTTGATGCAACACCTGCATTGCCTCTCCCTCACCACCACTGCTCTTACGATCACCACACCCTCTCCGCTTCGCCTCTTTTCTCCTTTCACAAGCCACCCAAAATGCTATGCTTTGGAAACCATCAAACCCAACCCCACATTCCTCCCACCATCGTCACCCCTCAGAAATCTGTCATCACTTCCAGTGACTCCTCTTCTGCTTCCTCCTCCAACCACACCAACACCGCCTTCACTTCCCTATCCAAGTCCACTGTATGTCACGCTCTCTCTGTTTTCTGGTTTGTCAACCGGAAACCGGTCATGGTAGTGTTGTTCCCGTACTACCTTCTTTTTTTGGCTTTTCATTTTGTCTTTTGTTTAAGAGTTTGCAGAAAAAGCGGAATGGGTTGGGACAAGAACCAGTCACCAAGGTGGGTGTTGGAGGCCAGAGACTAACTAAAAAGACCAAGGCAGAGAACCCCACCTCAACCGGACATGCAAAGGTGAGGAAAATAATCGACCGTGGATTGTTTGCATGTCGTTTTCTTCTCTGTCTTCACTTCGAACTCTAACTTTTCTCGATGACAGATACACGGCCTGTCGTTTTCTAATAAAAAAAATGTCGTATGGTTTTTAAAAGGGTTGTTATTATCATGGTTTCGTGTGGTTTGACGAGTTATTTGGAATATCAGAGGAAGGAGAAGCTTGGGGAAAGAATTGCAGCGTTACAACAGCTTGTTTCTCCCTTCGGCAAGGTGACTGAGATGCAGTGTTTTTACATTTGGAATTTTGTAAATTTTTATGTGGCCAAGGTCTATTGAAAACGGGGTTGACTGAATTGAGATTTTGAGTGTTGATCGAAACTGCATGTGCAGACAGATACAGCATCGGTGCTTCACGAGGCCATGGGATATATAAGGTTTCTTCACGACCAAGTTCAGGTCCTGTGCTCTCCTTACTTGCAAAGCTTGTCATCGTCACACCACCAACACCAGCACGTGAGTCCCATCCCATCTTTCATCATTCTCGCACTCTTCTTGATCGTGCAAGGTTTTTAATTGAATTCATGGTTTTGTCTCAATCTTTGACTTTGCGAGAGACTGTTGAATAATGCAACTGATGTCACGATTACAGGCAATTTTGTCACAACCTTTGATGTCGTGAAAAATCGTAGAGAAACGTAGTACGAAACAGTCACAACTGTGGTTGCAAAACCCCGATATTGTGGATGCAATTGCGTGTTTTGAAAACCTCGATCATGAGTATGATTTATTAGAAGTAAACAAAATCTATAACTAGCAAAGGTGGGAGTTGCAGGGCCCGCTTGATGGGGACAATACTGCAGATATTATAGCTTACTTGAAAAATGCTGATAGTTGTTTGTAGTGAGTGAACAGAGTCAACAGTGTGACACATTGGCATATAAGGTAAGTATTGATGACTGAAGAGATTTGGTGTGTGTGCATTATTTCAGGGTGATGGAGAAAACAACGAAGAGGAAGTGAAGAAGGACTTGAGGAGTAGGGGTCTGTGCTTGATCCCAGTGGGATGCACCGTACACGTGGCGAGTAGCAACGGTGCTGATTTTTGGTCACCCGGTGCAATAGGGAACAAAGTTTCACCATCAGGGAAGAAGTAG