Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_31174 LG8 45059624 45060814 PREDICTED: LOB domain-containing protein 38-like isoform X1
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/T 45059753 missense_variant p.Gly44Cys
C/T 45059756 missense_variant p.Arg45Cys
C/T 45059852 downstream_gene_variant
G/A 45059868 downstream_gene_variant
T/G 45059871 downstream_gene_variant
A/T 45059881 downstream_gene_variant
G/A 45059885 downstream_gene_variant
T/G 45059942 downstream_gene_variant
C/T 45059948 downstream_gene_variant
A/T 45059971 downstream_gene_variant
C/G,A 45059972 downstream_gene_variant
C/T 45059988 downstream_gene_variant
C/T 45060009 downstream_gene_variant
C/T 45060024 downstream_gene_variant
T/A 45060026 downstream_gene_variant
C/A 45060038 downstream_gene_variant
A/T 45060041 downstream_gene_variant
C/A 45060090 downstream_gene_variant
T/G 45060097 downstream_gene_variant
G/T 45060105 downstream_gene_variant
G/T 45060123 downstream_gene_variant
G/A 45060126 downstream_gene_variant
G/A 45060127 downstream_gene_variant
G/A 45060131 downstream_gene_variant
T/A 45060137 downstream_gene_variant
C/T 45060138 downstream_gene_variant
G/A 45060186 downstream_gene_variant
G/C 45060208 downstream_gene_variant
G/A 45060327 downstream_gene_variant
C/A 45060335 downstream_gene_variant
G/A 45060358 downstream_gene_variant
G/T 45060365 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_31174.1
MSCNGCRVLRKGCSENCMLRHCLQLIENPQAQAHATLFVAKFFGRAALMSFLSAVPANQRSALFQSLLYEAVGRTINPVNGAVGLLWSGNWQLCQMGVEKVLRGGAALTPLPHFLSSVDVHHQHHVTERVMIAGGTLCHQAKKQRVGTPSQESETSYMGRKPQDSAPQSQRNLLTLFF*


CDS Sequence:
>Vu_31174.1
ATGAGCTGCAATGGTTGTCGTGTTCTCAGAAAGGGTTGCAGTGAGAACTGCATGCTACGACATTGCCTACAATTGATAGAGAACCCACAAGCCCAAGCTCACGCCACCCTCTTTGTGGCCAAGTTCTTTGGCCGTGCTGCTCTCATGTCGTTCCTTTCCGCCGTACCTGCCAACCAAAGATCCGCTTTGTTTCAGTCACTGCTTTATGAAGCAGTGGGGCGTACTATAAATCCAGTGAATGGAGCAGTGGGGTTGTTGTGGAGTGGGAACTGGCAGCTGTGCCAAATGGGTGTGGAGAAAGTGCTCCGAGGTGGTGCTGCGTTGACCCCACTCCCTCACTTCCTCAGTAGTGTAGATGTGCACCATCAACACCATGTAACTGAGAGAGTGATGATTGCAGGTGGAACATTGTGTCACCAGGCAAAGAAGCAACGTGTGGGGACACCCTCCCAGGAATCTGAGACCTCCTATATGGGACGTAAACCACAGGATTCTGCCCCTCAAAGTCAAAGGAACCTCCTTACACTATTCTTCTGA


Promoter Sequence:
>Vu_31174::LG8:45057624-45059624(+)
CTTCGATTGAGATAATATCTTAATGATTTCATACTAGTTTTAATGACTTTATTTTTGAGAAATCATAATGATAAAGCAATAGAAAAAACTTCAATTTTGAAATGGAATAATAAAGTTAAACTATGTTAAATCAATCAAGTGACATTAGGTGGCGGTCTGAAATTGTAATTTAATCATCCTTGTTTATCCAAACACATATCAGAAGAAACCAACCTGTTCCCTAAAATCCACATAAGCATGCTTTAAAATGCACGTCACAAACATTGAAAATTAATTGTAATCCGGCACTGATTAATCGCATAGCAATCCTTCAAGGTTTGGTCAGTAATAGTATATTAATTAAATCAAGGTTACTCCTTAGGCCAGTTAATTGTGCCGCGGCAGCTAGTTTAATCAAACTCTAATAAATATTACTAATGCCACCAAATAGTTACTATGTTATAATACTTTTTAATAACTTATCTGTTAACTTCAGTTGGTTAATATTGTACTTTTATTCACTTCGTTTCTGTCACAAGTTGTGTTAAGTTTCAGAAGCTATACTCCAAAATCTAAAAGCAACATTCGTTTATTACAAAGAGTGTCTAGATCAAAGCCGTAGAATGGTTATTTGTTACACACATAATATTGATAAAGATAAGAAAAAATGAAAAACCGAAATCATTGTGAAAAAAAGGTTATTACTTAATACTGTACACAAGGCCGTGTTGAAATTGAAGGGGTGGAGAAGGACTTTCTTTTTCCAACTTCAGCTGATATTAGATTCAACAAAAAAGGGTCAAATTCTTTGAAAGGTGCCTGTAAGCAAGTAATAATAATATTGGCCAAATTCCATTTGTCTTCCTGATGCATTGAAGGGACACATAAATATATGAATATAGTTTGTGTTTGTGATGAAGATACACCAATAATAGTCCCTCTATTTCACAAACTAATTTTGAAATGTGTAGGGCCTAATCAAACATAATTATAGTATTAGTAGTATGCAGGGGATAAAAAGGGTCCTGCCCCTCAAATTAAATATCACAGCAATTTGGAACTATTGTGGAGTTCTTTAACCACATAAGATAGATGCATGTATATAAGGCCAAATTCTTAGCTGAGAAAGATTAACCTAATTGGAATCCCATTCTCCATAGACCTTAATTTTGTTGGGAAATACGCCAAACTCTTTTCATGTGGATGCAGATGTGGTCCATTTCGGATAAAGATGCCAAATGCCACGTATCCAACTTCTGACCATAACATCCAATGCCTTTTGTGTAGCTTTATACGCCAGCTTAATCATTATCATCCTTGTGTCATGCATCATCAGACCTCACTCTACTTTTTTAATCAATTGGTATCAAGCTCTATTGATGAACAAGCAAGTTCGGGATGGAAATTATATATTCATTTCTTCGAAATCAAAGTGTAAAAATGTCTTACTGAAAAGCACATGGGAAAGCGTTGAACAGAAGATAAATCTAGCAACAATTAATATCATATAATAAACTGTAACGAATCACTATATTCATGACAATACTGGAGCTTCCATTCACATTGATCTGAATAAGGAATCAAGCAAGAACTTGATGGTTGGAAAAATGCATATACGTTGATTTGAATCCAATCCAACTATGGAGAAATTCCAACATCTGCGGAGAACCTGAGCAGGCCCAGAACACCCGTTTCTTTGGAATACTATCTAGCCACACATTGTTTCCACAAGACCCTACCCATCAGTAACTCAACCATGGTTGAATTTATATGATATAAAATTAACTACAAGTAACGTTATTCTAATATTATATGTTATATTAATAAACAAATGTGAACAAGATTGGTTGATTAATTGATGATGCATGCATGTCCCACACTCACTTTATATATGCCCAACTCACCTTTCTTCCACCATATATATAAAAACCTGCATCCTTTCTGCTTCTACACTCACTGTCTGATCAGTCTAGTTGATTCATAGTAAGAGTGTTGTGGAGTGGATCAAAAGAAGAAAAATA


Gene Sequence:
>Vu_31174(+)
ATGAGCTGCAATGGTTGTCGTGTTCTCAGAAAGGGTTGCAGTGAGAACTGCATGCTACGACATTGCCTACAATTGATAGAGAACCCACAAGCCCAAGCTCACGCCACCCTCTTTGTGGCCAAGTTCTTTGGCCGTGCTGCTCTCATGTCGTTCCTTTCCGCCGTACCTGCCAACCAAAGATCCGGTACGCAATGTAACCTTATCTATGTATGCATAAAAAACAGTTGCCAAGGTACATATATGGGGATACATGAGTTATGTGCTTCTGATTTTCTCAGAACATATCCAACAGTACAATCTTTTAAAAACTTCAAAAAGTTTCTACAGTTATTTTACAATTCTTAAGTACTGTTAAAAACACTTGCTTATATAAGAAATTATTATACATAAGAACTAGTTCCTTAGGTTAAGAACCCCAGAGCCACTCCTACCAAAGATGCTTTTGCATCACTAATCTTTCAAATAGCAAACTATAAAGCTAGAATGATATCATAATATCGTAGGCAAGCCAGTTCCATATAACCAATTGTTTTATCTTCTCTAAATAATCGGCCCCACGGCCGGGTTTCCAAATTGAAGTGTTAGATAAGAAGTTCCATCAACATGTATTCTTTTAGCATATACAGTATGTTATCTGGTTCCGTTAAATTAGATGAGACATATAGTTAAAGTTTCAGTATGCAACTGCAGTATATAGCAAATCGTTTACTACTATAATGAACCATATATAGGACGATTGATGAGGAGCTTAATTATGCAGCGCTATTTGAGTGTGTGTGTTTTGAGGAAGTTTGGAGAAAAAGTTGTGACATTTGGTGTGTGTATGTGGCACTGACAGCTTTGTTTCAGTCACTGCTTTATGAAGCAGTGGGGCGTACTATAAATCCAGTGAATGGAGCAGTGGGGTTGTTGTGGAGTGGGAACTGGCAGCTGTGCCAAATGGGTGTGGAGAAAGTGCTCCGAGGTGGTGCTGCGTTGACCCCACTCCCTCACTTCCTCAGTAGTGTAGATGTGCACCATCAACACCATGTAACTGAGAGAGTGATGATTGCAGGTGGAACATTGTGTCACCAGGCAAAGAAGCAACGTGTGGGGACACCCTCCCAGGAATCTGAGACCTCCTATATGGGACGTAAACCACAGGATTCTGCCCCTCAAAGTCAAAGGAACCTCCTTACACTATTCTTCTGA