Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_31167	LG8	44996440	44997957	PREDICTED: transcription factor bHLH84-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	pollen development, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus, nucleus, nucleus
Molecular Function	enables	RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, DNA-binding transcription factor activity, protein dimerization activity, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
T/C	44996463	missense_variant	p.Ile346Val
C/T	44996578	downstream_gene_variant
T/A	44996646	downstream_gene_variant
A/G	44996647	downstream_gene_variant
A/G	44996961	downstream_gene_variant
A/G	44997084	missense_variant	p.Leu247Pro
A/T	44997155	synonymous_variant	p.Gly223Gly
C/T	44997332	downstream_gene_variant
G/A	44997400	synonymous_variant	p.Ser186Ser
G/A	44997488	missense_variant	p.Ser157Leu
A/G	44997702	missense_variant	p.Ser86Pro
A/T	44997927	missense_variant	p.Trp11Arg

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_31167.1

MDPTEQISEEWSSLSGFCTAEEADFMSQLLDNCSLPENLCGNFHLGIPSATWPGHESTILTVTSINDSPYFPTTADNSNSNYLCFSQGSCSTSDSSNIFPATSGNKHCLNDPVANIGYVSMGFAKFSPYNVQGSDSQQMNENTDQDLCPEVIADKNSQDHQECEVLVSEAATEDITTNLEKSGKRSRGSMQVRKSKKNAKSVKKPKSDSISNSEEGRSPDLQGCCSDDDDSNASQELNGGGSPNLSLEDSTSLKLKGKKSTASRGSATDPQSVYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNIIPTKQP*

CDS Sequence:
>Vu_31167.1

Promoter Sequence:
>Vu_31167::LG8:44997957-44999957(-)

TGACGTTACTTTCATCACTTGCTTCTTCACAACAGTGTGAACAACCTCATACGAGGAGCACGAACTTCATTATTGGTTAGTTTTCTTTGATTTTTATTCTTTTAATACATAACTTTCCCTTAGTTCTCTTATATTTTGAAAGAAGGAAAAAAAAAGTTAAATTTACTTCTCCCACAAACGTAAAAAAATCTGAAATAACAAAAGTAAAATACTTTTATTTTGTGTCAATGAAAAAGGTAAATAAATCAACAAACAAATAAAAAATATATATCCGTATTTTATGATATTGAATGTGATATTTTACTATTTATTGACATTAAATTACATTTTTTATAAAAAAAATTAAAATCTTTCTAATTTAACTCTCATGAATTCTCATTATGCATATACAAAATTTTTAAAATCTAAGGGCATATCATCTTCCCACATCCAAGAAGATATGCTTCTGAGTACTAACAACATGGTGAATCACAAACTCATAATCGTGATAAATTTATTCTTGGGGTTAAAAACAAACATTTATATATTTATCAATTTGAAAGAAGTATAAAATAACGTAATTTTAACAAGTATATATTTGTTAACCATAAATTGACCAACTATTTTAAAACATTTAAATTTAATATTTATTGCGGCACTTTTAGTACATGTCATGCAACTTTTTTATGAACCACAAAGTGTAGGCCAATTTTTAGTTAAAATAATTAAGATAATAATAACACTGTAATTAATGTCTTGGCTAAGGCTTTGTAGCATGAGAGATCTTATGTGTAACAATCTTAAATTGGAGTGTAAGAGGAAGAAGAATCTTAAGGCAGTGTTCCAATCTCTGATCTAACCAAACGGGCACTCACGAACTCACAAAGGATATATAAAATACAGCAAATCTTGTTAATCATCCATATGTCGAGGAATATATTGTTGTCCATATATTCCAACATCTTAAACATAAATATAAACATAAAATACGACAGAGAATGTTGAACACTGCCCTGAAGCCAGAAGTGATATTATTATACAAATCGTTAATTGTGCCATTGTTTCATATCTGGATTATAGCCCAGATTTCCCAACTCAGCATTACGATAAAATGCTGAACTGGGCACAAGAATCTCGCATTATATCGATCCACGAATGTTTGCAAAATCTAGAACTGAAAACTGAGTTGAACAATGAAGAGAATGTGGTAGGTTTTTAACAGCTCTAGAGGGGACAAAAACACAGTTAGCAGATAATGCTGTCTAGTTTTGAAAACAGTTTTCAGAATGGAAGACTTACCACCACGATCTCTCGCCGTCCTTCTTGCATACGTCATTTTGTATTTTGTCTAATACATAATTTATATAATATCATATTCTGGGCCAACCCCACGTCGGTCTCACTATTAACAGGTGTAATTCTCTTTGTACAACCCTCCAAATCTCCTCATTCTCATTCACAAATACTTTTATATTCTGCTTCTCTCTCATCCGTGGAAGGAATTTTCAGGTCTACCAATTTTGTACAGGGCTTCCTGAACAATGATATATTCATATTCTAATGAAAAACGAATAATTGATCCAGTGGATGAAGGTATGGTCTGGAACACAGGTTTACTTGGTGTTCTAAAGATTGGTTTTGACGGTGTTAAAATAATTTTCATCAGTGCAAGTCTCATCCCTCTGACAAAAATTAATCATCTGTTCTGAATTACTCCGTGAAAAAAAGATACTTACGAAAAGGGACCTCTTAAATTATAGCTTAAAAGTGGTCCCATCAAGAACTTTTGCGTATTGATTTAAGGGTGTAGGACTTTGTCAGATGCTAATTATTGCCAATTATGAATTGAGATATTTTTATATGGATGAAGTCAATCCTTAGTGGTATATGATTTATACTTGTTGGGTATAAATAGAGTACAGTTCTCATTCTATAGGTGGGGTTCTTCTTCAATAACAGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGTCACACCCAAGAAAGAAA

Gene Sequence:

>Vu_31167(-)

ATGGATCCTACTGAGCAAATTTCTGAAGAATGGAGTTCTCTCAGTGGTTTTTGCACTGCTGAGGAAGCCGACTTCATGAGCCAGTTGCTTGACAACTGCTCGCTCCCTGAAAATCTGTGTGGAAATTTCCACTTGGGAATTCCGTCTGCGACATGGCCTGGCCATGAATCAACAATACTGACCGTGACAAGCATCAATGACAGTCCATATTTTCCTACAACCGCTGATAATAGTAATAGTAATTATTTATGTTTTTCACAAGGAAGTTGCTCCACTTCTGATAGTAGCAATATATTTCCTGCTACAAGTGGCAATAAACACTGCTTGAATGACCCAGTAGCCAACATTGGCTACGTGTCCATGGGTTTTGCCAAGTTCAGCCCATATAATGTACAAGGGAGTGACAGCCAACAGATGAATGAAAACACTGATCAAGATTTATGTCCAGAGGTTATTGCTGACAAGAACTCGCAGGATCACCAGGAATGTGAAGTACTAGTTTCTGAAGCAGCAACAGAGGATATAACCACCAATCTGGAGAAGTCGGGAAAAAGATCCAGGGGCTCAATGCAGGTAGAATAACACAAATTATTACTGATGCTGTTTCTTTGTCCTATAATAGTATGGTTATGTAAGCATTTCCTTTTCCAGCAGATATTTTTTGCGGTTCTTCTCATCATGATTTGATGATTTTTACTTAATGGTAGGTACGAAAGAGCAAGAAAAATGCTAAATCCGTGAAGAAACCAAAATCTGATTCAATAAGTAACTCTGAAGAGGGTAGAAGTCCTGATCTTCAGGGTTGCTGCTCAGATGATGATGACTCCAATGCTTCTCAAGAGCTAAATGGAGGAGGATCTCCAAATCTGAGCCTGGAGGATTCTACATCCCTTAAGTTGAAGGGGAAAAAATCAACAGCTAGTAGAGGTTCTGCTACTGATCCACAAAGTGTATATGCAAGGGTATGTATTTCATCAAATTAATCCATTCTAACAATTCTATGATCTTTCATTGTTGTCAATGTACTGTAAAGTGTAAAGGATGTGATCTCAAGAAATTTTCCTTTTTGCACAACGCAGAGAAGAAGAGAAAGAATAAATGAAAGATTGAAAATCCTACAAAACCTTGTCCCGAACGGAACCAAGGTAGATTTCTCAATCAATATCAAACTACTGCCAAAGTCAAACAAGTGGTTGACTTAAGATGCTGAATTTTGGTTCCTCGTGAATTGCAGGTGGATATCAGCACCATGCTTGAGGAAGCCGTTCAATATGTGAAGTTTTTACAGCTCCAAATTAAGGTAACAACTTTAGTTGAGATTCTCCTTTCTTTACTCTGCATCCAAATTTTAGTTCAGTATGAAAGATTTTTGTTATATCGTATATAAGATAGAGACTCATTATGATTTGAATTTAACAGCTTCTGAGCTCTGATGATCTTTGGATGTACGCTCCTATTGCTTACAATGGAATGAACATTGGACTAGACCTCAATATTATCCCAACCAAACAGCCATAA