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ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_31116 LG8 44538111 44541261 "Cysteine-rich receptor-like protein kinase 25, partial "
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 44538113 start_lost p.Met1?
T/A 44538205 missense_variant p.Phe32Tyr
C/T 44538285 missense_variant p.His59Tyr
A/G 44538618 missense_variant p.Asn170Asp
G/C 44538652 missense_variant p.Arg181Thr
G/T 44538669 missense_variant p.Ala187Ser
T/G 44539065 upstream_gene_variant
C/T 44539182 upstream_gene_variant
G/A 44539186 upstream_gene_variant
C/T 44539213 upstream_gene_variant
A/G 44539214 upstream_gene_variant
A/T 44539226 upstream_gene_variant
G/A 44539229 upstream_gene_variant
A/G 44539230 upstream_gene_variant
A/C 44539235 upstream_gene_variant
A/T 44539300 upstream_gene_variant
G/T 44539349 upstream_gene_variant
A/G 44539409 upstream_gene_variant
C/G 44539435 upstream_gene_variant
A/G 44539473 missense_variant&splice_region_variant p.Arg267Gly
C/G 44539658 upstream_gene_variant
C/T 44539730 upstream_gene_variant
G/A 44539772 upstream_gene_variant
A/T 44539825 upstream_gene_variant
G/T 44539848 upstream_gene_variant
T/A 44539851 upstream_gene_variant
G/A 44540001 upstream_gene_variant
T/A 44540040 upstream_gene_variant
C/G 44540086 upstream_gene_variant
A/G 44540129 upstream_gene_variant
A/G 44540155 upstream_gene_variant
C/A 44540276 missense_variant p.Asn316Lys
T/A 44540316 stop_lost p.Ter330Lysext*?
C/T 44540412 stop_gained p.Arg362*
A/G 44540424 missense_variant p.Lys366Glu
A/C 44540588 upstream_gene_variant
C/A 44540690 missense_variant p.Asp403Glu
C/T 44540788 missense_variant p.Ser436Leu
C/T 44540849 upstream_gene_variant
T/G 44540883 upstream_gene_variant
T/C 44541108 synonymous_variant p.Val501Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_31116.1
MRIMITKSKNSLKLFLFCTLVLTVTETSASVFNNVSCSSNHTFTPNTTFNANLNTLLSHLSSNVTNNFRFFNTTSGEGSDTVYGLYMCRGDVPFALCRECVGFATLTIASSCPTSKEAVIWYNECLLRYSYRFFFSKMEEWPRHQVNIPLGDPVVLHSNKFYTALGSIFNELPNQAALALRGSNPYAVKQENASASVTLYGLAQCTPDLAAGDCKRCIADAAAEFAVSCCGGSIGASVLFPSCIVRYETYPFYQHSGTSAPTTIKGSGNIRTEVIVIAVVMVVVLVIIFFFGYYGFNRIKARKKSKASDDRENYPATHRILTWSERYKIIKGIARGILYLHEDSRLKIIHRDIKPSNVLLDNDFNPKISDFGMARMVDTNQIQGCTNRVVGTYGYMPPEYAMHGHFSEKSDVFSFGVMILEIISGKKNSCSYESSRVDDLLSYAWNNWRDVSPFQLLDPSLVESYSPNEVEKCMQIGLLCVQENPDDRPIIGTIVSYLSNPSVEMPFPLEPAFFMQGRVRRHSAEHQSSSGYSINHSFSTSVNNMSTTVFFPR*


CDS Sequence:
>Vu_31116.1
ATGAGAATCATGATTACCAAGTCCAAAAATAGTCTAAAACTGTTCCTTTTTTGCACCCTTGTGCTCACCGTTACAGAAACATCTGCTTCGGTGTTCAACAACGTTAGCTGCTCCAGTAACCACACTTTCACTCCAAACACCACCTTCAATGCCAACCTCAACACCCTTCTCTCCCACCTTTCCTCCAACGTCACCAACAACTTTAGATTCTTCAACACAACATCTGGGGAGGGTTCGGACACCGTCTATGGCCTCTACATGTGCCGTGGAGACGTGCCGTTTGCTCTATGCAGAGAGTGTGTGGGTTTCGCGACCCTAACCATAGCCTCGTCGTGTCCCACATCGAAAGAGGCTGTGATTTGGTACAACGAGTGTTTGTTGCGCTACTCTTACAGGTTCTTCTTCTCTAAAATGGAAGAATGGCCACGGCACCAGGTCAATATCCCATTGGGGGATCCTGTCGTTTTGCACAGTAATAAATTCTACACTGCTTTAGGATCCATTTTCAATGAACTTCCAAATCAAGCAGCACTGGCTCTCAGAGGGTCCAACCCTTATGCTGTTAAGCAAGAAAACGCTTCTGCGAGTGTGACCCTGTATGGCCTCGCTCAGTGCACACCAGACTTGGCCGCCGGAGATTGCAAACGGTGTATCGCCGATGCGGCGGCGGAATTCGCCGTGTCTTGTTGCGGAGGGAGCATAGGGGCAAGTGTTCTGTTTCCCAGTTGCATTGTTAGGTATGAAACGTATCCGTTTTATCAGCATTCAGGAACCTCCGCGCCAACAACGATTAAGGGTTCAGGAAATATTCGCACTGAAGTGATTGTGATAGCCGTTGTCATGGTTGTCGTTTTGGTAATCATTTTTTTCTTTGGCTACTACGGTTTCAACCGCATAAAAGCGAGAAAGAAAAGCAAGGCCAGTGACGACAGAGAAAACTATCCCGCAACACACAGAATATTAACTTGGTCAGAGCGGTATAAAATCATTAAAGGAATTGCAAGAGGAATTCTTTATCTTCATGAAGACTCTCGTCTTAAGATTATACATCGTGATATCAAACCAAGCAATGTTCTATTGGACAACGACTTCAATCCAAAAATCTCTGATTTTGGCATGGCAAGGATGGTAGATACAAACCAGATTCAAGGATGTACGAACAGAGTTGTGGGTACATACGGTTACATGCCTCCCGAGTATGCCATGCATGGACACTTTTCTGAAAAGTCTGATGTATTCAGTTTTGGAGTTATGATTCTTGAGATTATCAGTGGAAAGAAGAATTCTTGTTCTTATGAATCATCTCGTGTCGATGATCTCTTGAGTTATGCATGGAACAATTGGAGGGATGTATCACCATTTCAATTGTTGGATCCGAGTCTTGTGGAATCTTACAGTCCAAACGAAGTTGAGAAATGTATGCAGATTGGTTTATTGTGTGTGCAAGAAAATCCTGATGACAGACCAATAATAGGAACCATCGTTTCATATCTTAGCAACCCTTCGGTTGAAATGCCATTCCCTTTAGAGCCAGCGTTTTTCATGCAAGGCAGAGTTAGAAGACATTCAGCTGAACATCAATCATCTTCAGGTTACTCCATCAATCATTCTTTCTCCACCTCTGTAAATAACATGTCCACTACCGTATTCTTCCCTAGATAG


Promoter Sequence:
>Vu_31116::LG8:44536111-44538111(+)
TCAGATGTCCGACCTCTATTTACATATGAGCTAGACGGGTCTTTAAACTTATTTTGGTTTCGTCATGAGAATCTACTGAGTTGGATTGTCTATCTCACCTTTAGTATGTAGGAACGTCCGATCCTATGATACATTGCATAATATCTATTAAGAATTTGAGTTTAAGGTTTACAATTTAAAATCTTTATAATTGAGTCAAATAAAATATTATATAAAAAATATATTTAACATGAATTTTAGAACCATTACTAAATAGAAAATAGTTTAAATTAAGATTTTTAATATTGGTTGAGTAATTAAAGTTAAAAGAGATAGCCTTTTTTTAAAAAAAAAGTTTACCTATTTACAGATTTATATTTTTTCTTTTACACTGAAATAAAAATAAGTAACATAAGCAACATGTGAATAAAATGTAGTAATAAATAATTATTATAATAATCTTATAGATAATCCACCCGCAACAAACCACAATCATAATTTTTCCTTCTTATCTTTTGCTTCTAAAACAAAATTAATATTTAATTACATGTTGGATACATATGAAAACGAAGCAGTGAACAGTAATTAAGAGTATCATGTAGTCTTTATACAATTAATGTGATCTCTACCCAACACATTATATTCATTCATAACATTAAAGAAAAAAAACATGAATAAACAATGACTTACAAATTACTATAAATATAAGATATTACTAAAGCAAATATTTTATTACTTACCTTTCTACTATTTTGTTAATTTTTTCGTCATTATTGACATCACCCCGTGGTTCAATAATTTGACTAAATGATAATATATGAGAATGCTATGGTTAGGTCCACGTCAATGACTACAGGCAAAATGGCACATAGCGAAGTTGGCTTCTACTATCACGTGTCCGTGCTGACTCCACCACCAATAATTGACAACGCCGCACCCTCTCAAATGCACATTTGTTTTTACCGGGAATATAACTTTTTAAAAATTTACAAAAAAAGATAATTTAAAAAAAGTTATAAATAAAGATAAAACGGAACATTTTAAGCGAGTCTTTTTTTTATATAATTTCAACAAAAATTAAATCAAATTTGTAATACATCTTTTAAAATATATTAAATTAAAATAGTGAGATATTAATATGATTTTATTTTATAAATTATATTGTATGGCTGAGATGGTCATGTAATCATCTCATGACCAAGTCGACTAGACGACTGTTAAGAGCAGGAGTTTGTAAAACTATTTGAAAATTATAAATATAAATCAAAGATTAGAAATAGATATTTATATTTATCACACATTTATTATTATTTTATTGAACTCCCGTAGCGATAGTGGACATGGATCGAATAATTTTTGGGAAATGTCTTCTTTAACAACTCTTTTTTAACAATTTTTTTGACAACACAGACGTGGTAGCTTATGATGGGTTGGTTTCAAATATTTTTCTGAAAACAAATTCAAACAAACCAATAAAACAATGACATGTGGCCCATTGTCAAAAAATTGTTAAAATTTGTTGTTGAAATATCAGGATCCTAACCTTTATCATTGTATCACTCCAACATAATTTATTTCAAGTGAAAAGTTGTGTCAAATGATACAATTTGCCTATATCTATGATGTTTTTTAAAAATATCTATTTTGATAGGTTAAAAGAAAAAACCAGTTTGGTGAAAAACCTCAAATGCCATATTTCATAAACTATCCACGGAATAGAAGGGAGGAGAATGCATTCGCTACGTTTCTAAAACAGTCAGATTAAATTAACTTTCGTAGGAGATAAAGAACCAGTTGTCACATCTTATAAAAATTATAATCTATTTACAATCATTTATATATTATTGAACTAGTTTTAAATACAAAATATGAAACCACGACTTGTGATATTTTACTTTGTTGACAAACCTCAATCCAATTCATAGACCGCGGCCGTCTCTGACTTCTATCCCTTCACGCGCATCTGCATGATGCCATCACTCGTTTCTTTGTCTCAGTCAGTGCAGAGATTTTGCAGCACA


Gene Sequence:
>Vu_31116(+)
ATGAGAATCATGATTACCAAGTCCAAAAATAGTCTAAAACTGTTCCTTTTTTGCACCCTTGTGCTCACCGTTACAGAAACATCTGCTTCGGTGTTCAACAACGTTAGCTGCTCCAGTAACCACACTTTCACTCCAAACACCACCTTCAATGCCAACCTCAACACCCTTCTCTCCCACCTTTCCTCCAACGTCACCAACAACTTTAGATTCTTCAACACAACATCTGGGGAGGGTTCGGACACCGTCTATGGCCTCTACATGTGCCGTGGAGACGTGCCGTTTGCTCTATGCAGAGAGTGTGTGGGTTTCGCGACCCTAACCATAGCCTCGTCGTGTCCCACATCGAAAGAGGCTGTGATTTGGTACAACGAGTGTTTGTTGCGCTACTCTTACAGGTTCTTCTTCTCTAAAATGGAAGAATGGCCACGGCACCAGGTCAATATCCCATTGGGGGATCCTGTCGTTTTGCACAGTAATAAATTCTACACTGCTTTAGGATCCATTTTCAATGAACTTCCAAATCAAGCAGCACTGGCTCTCAGAGGGTCCAACCCTTATGCTGTTAAGCAAGAAAACGCTTCTGCGAGTGTGACCCTGTATGGCCTCGCTCAGTGCACACCAGACTTGGCCGCCGGAGATTGCAAACGGTGTATCGCCGATGCGGCGGCGGAATTCGCCGTGTCTTGTTGCGGAGGGAGCATAGGGGCAAGTGTTCTGTTTCCCAGTTGCATTGTTAGGTATGAAACGTATCCGTTTTATCAGCATTCAGGAACCTCCGCGCCAACAACGATTAAGGGTAAGTTTGTTTTCTTTTGTTTCTCGAATGAAAATGTTGGATTCTTTGGTTTAAAGAATAGCAGAGAGAGAAAGGTTTATCAAAGTTTTAATTTGCAACCAATCACAGTTTAGTCACAATCCTTGAAAATACAAGTGGCCAATCAGATTGTAAATATTTTAGTCCCGATCATCCACATATTTTGAGGTTGGCTAATAAGTTGGAAAGAATAAGAGAACAGAGAAAGCAAAAGATTTTAATTGGAGAAGGAAAAAATACTTTCTTTATTTGACTTCCAATGGAATAACCAGAAATTTTCACTGATCTCATTTTTATATATATAGAAAAAAGAGATTAACTAATTCTTGAACTCAGACAACTCTTCATAAATTGCTTTCTGCAAGAGATAAGATTAGTCTGATGACAGTAAGCACGAATATTCAACTGTGGCTTCATATAATTAGCATACTTGTCGAATATGTGCTGTATTGAGTTTGATCATTAGTTGATTAATTTTGTACAAAAGAAAACGTTGAAATGGTGTTGACGCTGTGTGGTTTGTCAATATGACACGTTTTGACAGGTTCAGGAAATATTCGCACTGAAGTGATTGTGATAGCCGTTGTCATGGTTGTCGTTTTGGTAATCATTTTTTTCTTTGGCTACTACGGTTTCAACCGCATAAAAGCGAGAAAGAAAAGCAAGGCCAGTGACGACAGAGAAAACTGTAATATCAACGAACCTGTTATATCTTCAATATTGGAGCTTAGTACAAAAGCCTATAGTTTTTTTTTTCTTTATATTTATTACATGTACTCGGTGTGAGTATTTCCAATAACTGCTCCGTGAATTGTAATGCAGTTGGGGTAGAAATCAGTGTCTTGGAGTCCTTGGAATTTGATTTTGCTACAATTGAAGCAGCAACAAACAAGTTTTCTGAAGACCGCAGGATCGGCAAAGGGGGTTACGGAGAAGTCTACAAGGTAACATAAATGCGATGATCAATGTGTCATCTATATTGTTTTCTTGTTCTATTCTAACGGCATGTAATCACAGGGAATCCTTCCTAACGGTGAAGAAGTAGCTGTAAAGAGATTGTCAACAAATTCTAAGCAGGGAGCGGAGGAATTCAAGAATGAAGTGTTGTTAATAGCTAAACTTCAACACAAAAATTTGGTGAGGTTAATAGGATTTTGCCAACAAGACAGAGAGAAAATACTTATCTATGAATATGTCCCTAACAAAAGCCTTGATCACTTTCTATTTGGTAAGACTTTTCAGTATTTGTTTCTGCTCTGAGTTTTACATTGCAATTTTAATCGAATGTGAAATAAATATTGATTTATACTTTTGTAATGTATTTGACTAATGGTATCTGTAGATCCCGCAACACACAGAATATTAACTTGGTCAGAGCGGTATAAAATCATTAAAGGAATTGCAAGAGGAATTCTTTATCTTCATGAAGACTCTCGTCTTAAGATTATACATCGTGATATCAAACCAAGCAATGTTCTATTGGACAACGACTTCAATCCAAAAATCTCTGATTTTGGCATGGCAAGGATGGTAGATACAAACCAGATTCAAGGATGTACGAACAGAGTTGTGGGTACATAGTGAGTTGCAAACCCTTACATTTTTCAAAAGTACATTTTTATTTATGTAATTCGTTTATTTATCATCATGAAATAATTGTGATAATTTCTGAATACTCTCACGTCCCTTATAATCTCCATGCTGATTGTTTTCTGCATTCTTCATTTTCAGCGGTTACATGCCTCCCGAGTATGCCATGCATGGACACTTTTCTGAAAAGTCTGATGTATTCAGTTTTGGAGTTATGATTCTTGAGATTATCAGTGGAAAGAAGAATTCTTGTTCTTATGAATCATCTCGTGTCGATGATCTCTTGAGTTATGTGAGTATTCAATTCTTGTTTCTTCTTATTGACTGCTGTTCTCTGAACCATAGTTCAAAAGAGACATAAACAAAGTTTAAGAAAGTGATAAAGGAAAATCTTGAATGGGTAATTAATTTCAGGCATGGAACAATTGGAGGGATGTATCACCATTTCAATTGTTGGATCCGAGTCTTGTGGAATCTTACAGTCCAAACGAAGTTGAGAAATGTATGCAGATTGGTTTATTGTGTGTGCAAGAAAATCCTGATGACAGACCAATAATAGGAACCATCGTTTCATATCTTAGCAACCCTTCGGTTGAAATGCCATTCCCTTTAGAGCCAGCGTTTTTCATGCAAGGCAGAGTTAGAAGACATTCAGCTGAACATCAATCATCTTCAGGTTACTCCATCAATCATTCTTTCTCCACCTCTGTAAATAACATGTCCACTACCGTATTCTTCCCTAGATAG

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This project is funded by the Department of Biotechnology
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