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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_31058 LG8 43973797 43977343 PREDICTED: probable serine/threonine-protein kinase WNK9 isoform X1
Map

Annotations  
category   relationship type   keyword
Pathway   B 09181 Protein families: metabolism   C 01001 Protein kinases [BR:ko01001]
SNP Position Effect Amino acid change
T/G 43974523 synonymous_variant p.Arg613Arg
C/G 43974530 missense_variant p.Met610Ile
G/A 43974543 missense_variant p.Ala606Val
A/G 43974549 missense_variant p.Leu604Pro
C/T 43974587 synonymous_variant p.Leu591Leu
A/C 43974595 missense_variant p.Phe589Val
G/T 43974635 synonymous_variant p.Leu575Leu
C/T 43974646 missense_variant p.Glu572Lys
A/G 43974650 synonymous_variant p.Asn570Asn
T/C 43974652 missense_variant p.Asn570Asp
G/A 43974767 synonymous_variant p.Ala531Ala
G/A 43974827 synonymous_variant p.Thr511Thr
G/A 43974851 synonymous_variant p.Val503Val
A/T 43974924 missense_variant p.Leu479His
G/T 43974932 synonymous_variant p.Gly476Gly
G/A 43975038 missense_variant p.Thr441Ile
A/G 43975259 intron_variant
T/A 43975271 intron_variant
T/C 43975279 intron_variant
C/T 43975280 intron_variant
A/G 43975400 synonymous_variant p.Val362Val
A/T 43975906 missense_variant p.Ser226Arg
T/C 43976154 intron_variant
G/A 43976501 intron_variant
A/G 43976529 intron_variant
T/C 43977275 5_prime_UTR_premature_start_codon_gain_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_31058.1
MNGAACVDAECCEFVEVDPTGRYGRYNEILGKGASKTVYKAFDEYEGIEVAWNQVKLYDFLQNPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTDNRQINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILEGLLYLHSHNPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSNAARCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKKPEALYKVVNPEVRQFVEKCLATASLRLSAKELLEDPFLQIDDYGFDSKVVQYQRDCYEVAPSIRQPLNVTYSINTSMSGYTDNLGGYGPFSELDYHQNDFETREIGLFDCEEDGNLAKVDTTIKSGRREDDGIFLRLRIADNEGRIRNIYFPFDIETDTALSVANEMVTELDITDQDVADLANMIDNEIATLVPEWRTGARIEENSECSGAGVCLNCAANGYLFDYVSNNPCGKNLQFLRCSKNGCAAIHGRFEEITYQVEGSASSDTEGARDASSHSDGIHYTDIWAQRDEPELCHEELKDIHCDQTHEASNPLNIKEEGKAVNVNGESDLNTKRPHSNPAINCFMLDCENEIRQELRWLKAKYQMQLRELRDQQLGVKPKFSCMSPDTKKINCGKDGIQSLSTQSRLKIQKHKPQLRSIVSGKHFPLEDEKCNNYADQMVQNVEEINQSNSPERVLTAKDFFTGALFPSSLQRATSLPVDAIDF*


CDS Sequence:
>Vu_31058.1
ATGAATGGTGCTGCATGTGTTGATGCAGAGTGCTGTGAGTTTGTGGAAGTTGATCCTACAGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTCCAAGACAGTCTATAAAGCATTTGATGAGTATGAAGGGATAGAAGTAGCATGGAATCAAGTAAAGCTTTATGACTTTTTGCAGAATCCTGAAGATCTTGAGAGGTTATACAGTGAAATCCATCTTCTCAAGACATTGAAACACAAGAACATCATGAAGTTCTATACTTCGTGGGTTGATACTGACAACAGACAAATCAATTTTGTCACCGAGATGTTTACCTCTGGGACTCTAAGACAGTACAGACTTAAGCACAGACGGGTTAACATCAGAGCTGTTAAGCATTGGTGTAGGCAGATTTTGGAAGGGCTTCTGTATCTGCACAGCCATAATCCTCCTGTGATCCACAGAGATCTCAAGTGTGATAACATTTTCATCAATGGCAACCAAGGGGAAGTCAAAATCGGTGATCTTGGCCTTGCTGCGATTCTCCGCAAATCTAATGCTGCTCGTTGTGTTGGCACCCCTGAGTTTATGGCTCCGGAAGTGTATGAAGAGGATTACAATGAGTTGGTTGACATATACTCTTTTGGAATGTGCATCTTAGAGATGGTCACTTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAGAAAGTTGTATCTGGGAAGAAGCCAGAAGCTCTTTACAAAGTAGTCAATCCAGAGGTAAGACAGTTTGTAGAGAAATGCTTAGCAACTGCGTCCCTCAGACTTTCAGCTAAGGAACTCTTGGAGGATCCTTTTCTGCAAATTGACGATTATGGATTTGACTCAAAAGTAGTGCAGTATCAAAGAGATTGCTATGAAGTAGCCCCATCAATCAGACAGCCTTTGAATGTAACGTATAGCATCAACACCTCAATGAGTGGGTACACTGATAATCTTGGTGGTTATGGGCCCTTCTCTGAATTGGATTATCATCAAAACGATTTCGAAACAAGGGAAATTGGTCTCTTTGATTGTGAAGAGGATGGCAATTTGGCTAAGGTTGACACCACAATCAAAAGTGGGAGAAGAGAAGATGATGGCATCTTTTTGAGACTCAGAATTGCAGATAATGAAGGTCGAATTCGAAACATCTACTTCCCATTCGACATTGAGACGGATACTGCATTGAGCGTTGCAAATGAAATGGTAACTGAGCTTGACATAACTGATCAAGATGTAGCAGATTTGGCAAATATGATAGACAATGAAATTGCAACACTGGTTCCCGAGTGGAGAACAGGAGCCAGAATAGAGGAAAATTCAGAATGTTCAGGTGCAGGTGTCTGCCTCAATTGTGCTGCAAACGGTTACTTGTTTGATTATGTATCAAATAATCCATGTGGCAAGAATCTTCAATTTCTTCGTTGTTCTAAAAATGGATGTGCTGCAATTCATGGCCGATTTGAGGAGATAACATACCAAGTCGAAGGGTCTGCAAGTAGTGATACCGAAGGTGCACGGGATGCATCAAGCCATTCCGATGGCATTCATTATACAGATATTTGGGCCCAGAGAGATGAACCAGAGTTATGCCATGAAGAGTTAAAAGACATACACTGTGACCAAACTCATGAGGCATCAAATCCGTTGAACATCAAGGAGGAAGGAAAAGCTGTTAATGTGAATGGAGAAAGTGATCTCAATACCAAAAGGCCTCATTCAAACCCTGCAATAAATTGTTTTATGTTGGATTGTGAAAATGAAATTAGGCAAGAGCTAAGATGGCTCAAAGCAAAGTACCAGATGCAGTTAAGGGAGCTTAGAGATCAACAACTGGGGGTTAAGCCAAAATTTTCTTGCATGTCTCCTGATACCAAAAAAATAAATTGTGGGAAAGATGGAATTCAGAGTTTATCAACTCAATCCAGATTGAAGATACAAAAGCATAAACCACAATTAAGATCTATAGTTTCCGGGAAGCATTTCCCTCTTGAAGACGAGAAATGCAATAATTATGCTGATCAAATGGTTCAAAATGTTGAGGAGATTAATCAGTCTAACAGTCCTGAGCGAGTGCTCACAGCCAAGGATTTCTTTACAGGAGCTTTGTTTCCAAGCTCACTTCAGAGGGCAACCTCCCTTCCCGTTGATGCAATAGATTTCTAG


Promoter Sequence:
>Vu_31058::LG8:43977343-43979343(-)
GTCTTAATCCTGATATTTTTATTTGTGAAAAAGAATAGAGTACCGATATCATATGTAGATATTATATTATTGTATAAAGTATTGATCGATTTTATGCATGCTAGCAAAGGTCATATATATATATATATATATATATATATATATATATATATATATATATATATCATGTTCTTCAAAATGTAAGTATTTTAAGTTATTCATTGATAAAGTTAACTTTTCTAAAATACTGTCAAAGATATCGATTGCTGACACGGTAGCTTGGGTAAGGAACACTACTTACAAAATTAAGAATACAAATTTTTATGTTCTAAAGAAGATACGTTAATAAAGAAAATATTTTAAATATATAAGGTCAATCATAAAACACATTAAAAATTAAGTTAAATATTTATTTTAATAATTTTAATTTGAATTATATTTTTTAAAATGTTCAAATTACGAGACGTGAAAGGATTATAAAATTTAATTATCAACAATATGACGATTTTAGCTGTATTATTTGACTGAAAATTCCCTTCTTTTTTCTCAGTTAGGAATTTAAATTTACGGAAATTTATTTAAGGAAACATATTCAGATTGTATCAATTGATGGCGTTCCTGCTGAAAAACATTCAGAGAGTGCTTTGTTTTTTTACTTTTTTTTTTAAATTATTAAACTTTGTTCTGGAAAACAGAAACACGTATCATTAAAAAATATTGTAAAATATTACAAATTAAATTTTACAACTAGTTTATAAAAAAAAATGAAAAATAAGGTTCAAAATCAATTCTCAGGAAATATGTTAAATTTTTTAAAAAAATTGATATTTTTCAGCTTCACATAATTCTAGCATAAAATATACTATTCGTAGTGTAAATAATTTTAATTGTTGAATTACACATTTACATATATTTAAATCGCTTGAAATTTGATAGACATGACAGCAAGATAGTAATAATTTAAGAGCTAAAAATGAAAAAAAAAAAAAAAAAAGCTACCATATTGCGTTTGGTATCGATTAATCCTATAAGGACTCAAATTTGAAGAAAAAAAAATCTTGAAAAAGGAATCTAGAATCGAGATAAAATTTTGATAATAATAAAATGCAGAAAAAACCAAAAAGAAAAATTGAGGTTGAAACGCAATCCCTTCCGAAAATCCAGAAGCATAGTGACGTTGAAGGGTAGGCTACTTAGAGATGAAGAGCAGTGGTCCCCTTTTCTTTATCAGAAGCCACCAATTACCACTGCTCCTAACTCTATAAACTTTTGCTATATGTATCCTAAACTTTCTCCCATCAAAACTAATATCAATTCGCTGAATTAGAGACCACCCACTTCAAAATACTTTTCTCCATATTTCTATTTTAGACACTAGTTTGTTAATAATTAGACCAACTAACCTTGAGTGCAACTTTTTGATAACTCCTAACTCAAATTTTGTTCACTACCTGTTGCTGTCCAAAGTGGAGAACTAAAAAAGGAACCCAGCATTAGAGAGAAGTAACATTGAGGGCATGGCCAAATCTAAACAAGTTGATCAATTTCACTAAAATAGTAACAATAGCAAGGGACATCCAATTTCCTAACTAGCAAGGTTTTCATAGATTTCAATGATGCAAGAAAGTCTAACCTCCCATAAATGCACAGGACCCAAATTCCCCTCCCGTGCATAGAGCACCACATAAAATATTTGTTTAATACGAAACCCTATAAAACGTTGGCTGGTCCATGCAGTGCAAGCTGTTGCATTTAGAGAGTGATAATGGTTTTACAGCTCGTGATGAGATGTAAAAAGCGGAGGCTGGAAGAAAGGGAGAGAGAGAGTGCGTGTTTGTCAGTTACTGTCAGAGAAGCGTGGTGGTAGATTAGAGGTATGACTGAGGTATCACTCTCCTACCTTGTGAAGCATTTGCCTTCTTGTTTAGGTTAGTTGGCACTTGGCAATAACTTTGTCTTTTTCATGGACCTTCCTACGCTCTTTCTCTCTCTCTCTCTCTCTTCCCTGATTCTCTCTATGT


Gene Sequence:
>Vu_31058(-)
CCACAGAAAACCAAAGTAATTAGTTATCACACTTTCCTATATTCCTTGTATTATGCATTGACAAAACTACCGATTTTTTTTCTCCCTTCTCGTGTTCTTTATCCCTCTCACTTTCTCGCAGAAGAGGAAGTTAAACTCTTTATAAACTATACCAAAGGAGACAACAGATAATAAGAAGCAAAGCATGAATGGTGCTGCATGTGTTGATGCAGAGTGCTGTGAGTTTGTGGAAGTTGATCCTACAGGAAGATATGGAAGAGTACATATACCTTTCCTTTACTCATAAATTTTGTTAGTTCTTTATGTTCTGGTTCTTTGTTCTGATTTCGGGATTTGAATTTCATGTTTTGCAGTACAATGAAATTCTTGGCAAAGGAGCTTCCAAGACAGTGTATGCGTGATATCCTTAGCTCTCGGTTTTCAGCATACCCATCTCAGTTTTCCAAACAAAATCTTTTAACTGCTTGAGATGTTTTCCATTTTGTTGTTTGAGTGAAACAGTTACTGGGTTTCAACAAAATGAGTTGTTTCTCTTCTTTTCTTTTTTTAATGAGACCATATTCATTTGTTGCAGCTATAAAGCATTTGATGAGTATGAAGGGATAGAAGTAGCATGGAATCAAGTAAAGCTTTATGACTTTTTGCAGAATCCTGAAGATCTTGAGAGGTTATACAGTGAAATCCATCTTCTCAAGACATTGAAACACAAGAACATCATGAAGTTCTATACTTCGTGGGTTGATACTGACAACAGACAAATCAATTTTGTCACCGAGATGTTTACCTCTGGGACTCTAAGACAGTAAGCCCTCTCTTTATTATCTTCTATGCATGTAAGCGTACATGTGTATATTCGATTGAATGATTTATTCGGGTAGTTCTAGCTTCTGCTTCTTTTTGTTTACAAATGGGTATATGCGTATATGTTTATTATATTCATTGTGTAAGCAGGTACAGACTTAAGCACAGACGGGTTAACATCAGAGCTGTTAAGCATTGGTGTAGGCAGATTTTGGAAGGGCTTCTGTATCTGCACAGCCATAATCCTCCTGTGATCCACAGAGATCTCAAGTGTGATAACATTTTCATCAATGGCAACCAAGGGGAAGTCAAAATCGGTGATCTTGGCCTTGCTGCGATTCTCCGCAAATCTAATGCTGCTCGTTGTGTTGGTGCGTAGAAAAGCAGCATGAAAGCCTTTGATTATGTTCCAAAAGATGAATATGAAAATGTTACTTTCCACTATGATAATTAGTCCTCTATGTCTGCACAGTTCACCAGGTTAAGACTCTATTTTCTTTTCCTTCTTTGTTTTACTCCAGGCACCCCTGAGTTTATGGCTCCGGAAGTGTATGAAGAGGATTACAATGAGTTGGTTGACATATACTCTTTTGGAATGTGCATCTTAGAGATGGTCACTTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAGAAAGTTGTATCTGTATGAAGCAAAAGTCGTTCTTTTATTTAATTTACCTCGACTTTCTGTCTTATATGATTCTTCATCTTTGTCCACTAACTTGTATGCATATTTTACAGGGGAAGAAGCCAGAAGCTCTTTACAAAGTAGTCAATCCAGAGGTAAGACAGTTTGTAGAGAAATGCTTAGCAACTGCGTCCCTCAGACTTTCAGCTAAGGAACTCTTGGAGGATCCTTTTCTGCAAATTGACGATTATGGATTTGACTCAAAAGTAGTGCAGTATCAAAGAGATTGCTATGAAGTAGCCCCATCAATCAGACAGCCTTTGAATGTAACGTATAGCATCAACACCTCAATGAGTGGGTACACTGATAATCTTGGTGGTTATGGGCCCTTCTCTGAATTGGATTATCATCAAAACGATTTCGAAACAAGGGAAATTGGTCTCTTTGATTGTGAAGAGGATGGCAATTTGGCTAAGGTTGACACCACAATCAAAAGTGGGAGAAGAGAAGATGATGGCATCTTTTTGAGACTCAGAATTGCAGATAATGAAGGTTAGCATTTCAATTTCTTATTTTCTTTTTGGAATTCTCAGTATTTGATTATTCTATATTCTGTTGTTCTTCTGTACAAACTGCATAAGCAAATAAACCAAAGTAACAAGACATTCCTCTAAACAGGTCGAATTCGAAACATCTACTTCCCATTCGACATTGAGACGGATACTGCATTGAGCGTTGCAAATGAAATGGTAACTGAGCTTGACATAACTGATCAAGATGTAGCAGATTTGGCAAATATGATAGACAATGAAATTGCAACACTGGTTCCCGAGTGGAGAACAGGAGCCAGAATAGAGGAAAATTCAGAATGTTCAGGTGCAGGTGTCTGCCTCAATTGTGCTGCAAACGGTTACTTGTTTGATTATGTATCAAATAATCCATGTGGCAAGAATCTTCAATTTCTTCGTTGTTCTAAAAATGGATGTGCTGCAATTCATGGCCGATTTGAGGAGATAACATACCAAGTCGAAGGGTCTGCAAGTAGTGATACCGAAGGTGCACGGGATGCATCAAGCCATTCCGATGGCATTCATTATACAGATATTTGGGCCCAGAGAGATGAACCAGAGTTATGCCATGAAGAGTTAAAAGACATACACTGTGACCAAACTCATGAGGCATCAAATCCGTTGAACATCAAGGAGGAAGGAAAAGCTGTTAATGTGAATGGAGAAAGTGATCTCAATACCAAAAGGCCTCATTCAAACCCTGCAATAAATTGTTTTATGTTGGATTGTGAAAATGAAATTAGGCAAGAGCTAAGATGGCTCAAAGCAAAGTACCAGATGCAGTTAAGGGAGCTTAGAGATCAACAACTGGGGGTTAAGCCAAAATTTTCTTGCATGTCTCCTGATACCAAAAAAATAAATTGTGGGAAAGATGGAATTCAGAGTTTATCAACTCAATCCAGATTGAAGATACAAAAGCATAAACCACAATTAAGATCTATAGTTTCCGGGAAGCATTTCCCTCTTGAAGACGAGAAATGCAATAATTATGCTGATCAAATGGTTCAAAATGTTGAGGAGATTAATCAGTCTAACAGTCCTGAGCGAGTGCTCACAGCCAAGGATTTCTTTACAGGAGCTTTGTTTCCAAGCTCACTTCAGAGGGCAACCTCCCTTCCCGTTGATGCAATAGATTTCTAGAATCTAGAAACCACCAAAGTTCATAATCATGAGCGGGTACCAATTTAACTACATTAACTGATAGCCTGTTTTCTTAAACTTAGGAAAGAAAATCAGAGCCTGAGACTGATAGGATTTACTCAAAAGACGCTAGCTGTAATTTAGCTTGTGGGCACCCTTTTCCATGATGGTGGTCACTTGACCTAGTATGAAAAATGCCAGATGTAAATCATGCACAGGATAACTCAGTCACATTAATGTAAGTAAAGTTTTCCCTTGAGATGCTGAATTTCAGCTCCATCTCCTACAGGATTACATACCATTGATGATATGAGATGCTGTGTCAGTAAAATCTGTCAGTTTTCTCTATGATATAAGTTTTTATCCGTTTATC

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