Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_30989	LG8	43264829	43266502	PREDICTED: receptor-like serine/threonine-protein kinase At4g25390	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/T	43264860	missense_variant	p.Phe548Tyr
G/T	43264884	missense_variant	p.Pro540His
G/T	43264929	missense_variant	p.Pro525His
G/T	43265222	missense_variant	p.Phe427Leu
C/A	43265265	missense_variant	p.Ser413Ile
T/A	43265266	missense_variant	p.Ser413Cys
C/T	43265402	synonymous_variant	p.Val367Val
C/A	43265749	missense_variant	p.Val252Phe
G/T	43265956	missense_variant	p.Leu183Ile
G/T	43266012	missense_variant	p.Thr164Lys
T/C	43266488	synonymous_variant	p.Gln5Gln

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_30989.1

MPSRQLSTSPPPSNRRILTPPVTSTASLCSLFFLLCLCFRKRKRTTPSSDSDSTPPHPFSYALLRRATNSFSTRLGHGGFGPVFAGTLAGDPVAVKLMDSASQQGEREFHNELFFASRLRSPSLVPAIGFSSDPKRRRFLLVYHLMHNGNLHDALLRSKTPHLTSWKNRFSIILDIARGIHYLHSLDPPVIHGDIKPSNILLDNTFCAKLADFGLARLKPHVQVQELKAKRDEKRRDESESDAGSELETVSVKTEQSFEGNTGSDYVMDWIGKELKKERPTTVEKVSSGSSSGLAEKKKSRKKLEWWEKMNDSGVPKMEKRRAAREWWKEEYSEELARKTKKKKTKEKKKRKGVNGDGDLEIDNGDVNVYKREKNRSRKSGGSVDSWLNGDVHGVGWNSYDSGTCSGEIVAKSGGVSSTPSMRGTVFYVAPEYGYNGDVSEKCDVYSFGVLLLVIVSGRRPLQVTGSPISELQRANLVSWARICGRRGKLLEVVDEDVEGLDKEQASLCVTVALACLLKSPTRRPSMKEVLGMLSGELEPPQLPRNTFPLNSRSQGR*

CDS Sequence:
>Vu_30989.1

ATGCCATCTCGACAACTCTCCACGTCACCACCACCTTCTAACCGCCGCATCTTAACCCCTCCGGTAACTTCCACCGCCTCCCTTTGCTCTTTATTCTTTTTACTTTGCCTCTGCTTCCGCAAGCGTAAACGCACCACCCCTTCCTCCGACTCCGACTCCACTCCCCCACACCCCTTCTCCTACGCCCTCCTCCGCCGCGCCACCAACTCCTTCTCCACGCGCCTCGGCCACGGTGGCTTCGGTCCTGTCTTCGCCGGCACCCTTGCCGGCGACCCGGTTGCCGTCAAGCTCATGGACTCTGCCTCCCAGCAGGGAGAGCGCGAGTTCCACAACGAGCTCTTCTTCGCGTCCAGGCTTCGGTCCCCCTCTCTCGTCCCCGCCATCGGCTTCTCCTCCGACCCTAAACGTCGGCGTTTCCTCCTCGTCTACCACCTCATGCACAACGGTAACCTCCACGACGCCCTCTTGCGCTCCAAAACCCCTCACCTAACGAGCTGGAAAAACCGCTTCTCCATCATCCTCGACATCGCCAGAGGCATCCACTACCTCCACTCGCTCGACCCCCCGGTCATCCACGGTGACATCAAACCCTCCAACATTCTCCTGGACAACACCTTCTGTGCAAAACTCGCCGACTTCGGTCTTGCACGCTTAAAACCCCATGTCCAAGTCCAAGAGTTGAAAGCAAAGCGCGACGAGAAGAGAAGGGACGAGTCCGAGAGCGATGCTGGGTCGGAGTTAGAAACTGTGAGCGTCAAGACAGAGCAATCGTTTGAAGGTAACACCGGGTCGGATTACGTGATGGATTGGATTGGGAAGGAGTTGAAGAAGGAAAGGCCGACGACGGTGGAGAAGGTTTCTTCTGGGTCGAGCAGTGGATTGGCGGAGAAGAAGAAAAGTAGGAAGAAATTGGAGTGGTGGGAGAAGATGAATGATAGTGGAGTTCCGAAGATGGAGAAGAGAAGGGCCGCGAGGGAATGGTGGAAGGAAGAGTATTCGGAAGAGCTTGCGAGGAAGACGAAGAAAAAGAAAACGAAGGAGAAGAAAAAGAGAAAGGGTGTTAACGGTGATGGTGATTTGGAGATAGATAATGGTGATGTGAATGTGTACAAGAGGGAGAAGAACCGGAGTAGGAAAAGTGGTGGAAGTGTAGATTCTTGGTTGAACGGTGATGTACACGGAGTTGGATGGAACAGCTACGATTCAGGGACTTGTAGCGGTGAAATAGTGGCCAAGAGTGGTGGTGTGAGTAGTACTCCGAGTATGAGGGGAACGGTTTTCTACGTGGCTCCTGAGTATGGATACAATGGAGATGTTTCTGAGAAGTGCGACGTGTACAGTTTCGGGGTTTTGTTGCTTGTTATTGTTTCTGGGAGGCGGCCACTTCAGGTGACAGGGTCGCCCATATCGGAGCTTCAACGTGCGAATCTGGTGTCTTGGGCGAGGATATGTGGTCGGAGGGGAAAGCTTCTAGAAGTGGTGGATGAGGATGTTGAGGGGTTGGACAAAGAGCAGGCTAGTCTGTGCGTGACGGTTGCGCTGGCTTGTTTGCTAAAGTCACCGACCCGTCGACCTTCCATGAAGGAGGTTCTGGGAATGCTAAGTGGGGAGCTGGAGCCTCCACAGTTGCCGCGCAATACTTTCCCCCTCAACTCCAGGAGCCAGGGTCGGTGA

Promoter Sequence:
>Vu_30989::LG8:43266502-43268502(-)

AAAGATTGAACTAATTTTAAAAAAAAATCGGAAAAGTGGGAAAAATTTGGTTATTAAGAATATGCACGTGTGGTGGCTATATGGCTATAATCTGAGCAAAAAGATTATTCTTTTGAGATTAGAATTTTCCAAATGATTTTTGTTTGACTAAAACAACAAGAGTTGTGAGTTTTGTTGACTAAAGGTTTTTTTTTTTTTAATTAGAAAGTTTGACATATATTTTTAGTGTATGCTTATGCAATCTAAAGCTGCCATGCACGGGTATACCAAGAAATATATTAATGAATACAAAAACAAACTCCCATACATGGAACCAAACAAAATGACCTTTACAATTACATGAGAAACTCATACCCTACAAAACAATTGATTTTAAGATACAACTAGGTAGCAAGCTAGTGAAGGGTCAATTCAGGAGAATTGTCGTAGCCATTTCTTAAAAAATGTTAGAGACAAATTAGGACAAACTTATTTTCCATTTTATTTTGCAATCCATTGCCAACATGACAAACTCAAAGGTTTCGATGCGACATGTGGAGGCTACAGTTATATTTTTATTATGGAGCTTAAGCTGACCGAAAAATTAAAAACTAAAATAAAGGCAACGTGTCAATGTCTCGTACCACAAATTTACAATTACAAAACTACAAAGTGGATCAATCAAAAGAAAACCACCGATCTCGTGTTCATCAAGAGTTGAACACAATTTCCCCTTCACCAAACCAGGGAAACTGTCTCAAGTTTGAAACCGGAAGAGTATAACCTCGTTCTTTCTATTTTACATATGATTTATTGAAAATTTCATGCCAACTGTGATACATTTTTTATTGAAAATATTTAGAGAGAATTTGCCAAAAAGATATCGTAAAGTATAATATTTTAATAAAAGTCACATAAAGATAGGTTTATAAGGGTTGTTGGATCCATCTGGTCAAAGCTACTGTTGACAAATTTACCTTCAAATTTATACGTGTGTATGTCACAAAAATAAAAAAGTATTTATAATAATTAGTCTTTTCCGGTTGGCTTTTCCTTGCAACTAAAGAAAAGAGGGAACGGAACTTTATGAAAATGAGAAGAAGTATTATGAAATAGAGGCAATCATTTAGTCCTCATAATGTTCATAAGGTAATCATGAATCATAAACACTCAAAAAGGGACTGCGTTTATAGGTAGCAGTTATTGTGCAGGTAACATACACATATCATAAAGGATAACCTCAATCTTCTTCATTTCCACATTTGCATCTGATCTGGTTTCAACTTTTACCTTCAAAAAACCATTTTTTTTTCTATTAAAAAAGAAGAAAGTGCAGAGTTCAATTGAGGGAAAATCACAGTATTTTTTTTATTTGAATTGTGATAAAACGTAATTGTAAATTAAGTGGATGTTTCATAGTGTCTGCAGCAAACGGGCTCTGAACAATATCACATTTTTGCAGTGAAATTCAACCTAATCCACACGTTTTGCTTGATTTTGGAACAGCGATCTTTAATTTTTCACATGAATGGAGTGATTTTTGTTACTCTACCATATATTAAAATATGATTCTTTTGTCTCTACTTCTCTATGATGACATAACCCGATTAGCAAAATATAATTCAGTAGTCATGTTAAGCTGCATTCTAAAGTTTTTATAGTGTTGTGGTTGGATGGTTGTGAAAGAACTGAGGGCATGACTGACAAGAATAGAGATATAGGAGAATGGTTTTGCATGGAGCGAAGGTTGTCTGCACAGAAATAGATCTGTCTTGTTGGAGGAGAAGGAAAGAGGGGAAAAGAAAAAAAAGAGTGGGAAAAAGAGAATTTTGTGGCGTGTGACGTCCCAATCCCAATCAAAAGAAGGCCAACAAAGTAAGAAACGGTCTGGTCAGAAGTACACACTACCATTATTCATCCCCCGTCGCATTCACAGAGCAGAGACACTCTCTCCTTCAAACTTCTTCATTTATCATTCATAATCCCTAATACATCCTTCCTATTATTTTCTCTTTCTCGCC

Gene Sequence:

>Vu_30989(-)