People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_30969 LG8 42999339 42999950 PREDICTED: ethylene-responsive transcription factor ERF027
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 42999407 synonymous_variant p.Ser23Ser
T/C 42999701 synonymous_variant p.Ala121Ala
A/T 42999707 synonymous_variant p.Ala123Ala
G/A 42999782 synonymous_variant p.Ser148Ser
A/G 42999814 missense_variant p.Glu159Gly
A/T 42999823 missense_variant p.Asn162Ile
A/T 42999825 missense_variant p.Met163Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_30969.1
MDGNPFGNVPPPPIQVPDNFPHSSSSSPTPTTSSPSPTPSAGFRYRGTRSRSGKWVSEIREPRKTTRIWLGTYPAPDMAAAAYDVAALALKGPDTPLNFPNSILSYPIPASLSATDIQAAAAAAAQARLVRAPQESGQAVNPDIGQESERRDEYYDEDELLNMPNLLDDMARGMQVSPPRISSFSSDDSPGNSDADNLWSYTL*


CDS Sequence:
>Vu_30969.1
ATGGATGGCAACCCTTTTGGAAACGTTCCACCACCACCAATACAAGTCCCTGATAACTTTCCTCACTCATCCTCCTCTTCGCCAACCCCAACCACGTCCTCTCCGTCTCCCACTCCTTCCGCCGGCTTCCGCTACAGGGGGACGCGCTCCCGTAGCGGTAAGTGGGTGTCGGAGATAAGGGAGCCACGTAAAACCACGCGCATTTGGCTGGGGACTTACCCGGCACCGGACATGGCTGCGGCGGCCTATGATGTCGCGGCTCTCGCGTTGAAGGGACCCGACACGCCCCTTAACTTCCCCAATTCCATACTCTCGTACCCGATTCCCGCGTCATTGTCTGCCACCGATATTCAAGCCGCGGCTGCGGCAGCAGCGCAGGCTAGGCTCGTGAGGGCGCCGCAGGAGAGTGGGCAGGCGGTAAACCCTGATATTGGACAGGAGTCGGAGAGGCGTGATGAGTACTATGATGAGGATGAGTTGTTGAACATGCCGAATTTGCTTGATGACATGGCCAGGGGAATGCAGGTTAGTCCCCCTAGGATCAGTTCCTTTTCTTCTGATGATTCGCCTGGCAATTCCGATGCAGATAACCTTTGGAGTTATACCCTCTGA


Promoter Sequence:
>Vu_30969::LG8:42997339-42999339(+)
TATTTCTTTCAATTTGTTGCCTTGCTCGACTTCTTCGAGATGAATAATAAAAGAAATTCTAGGAAATAAAGTTACGATGATTATATATGTGACCAAAGACAAATGATGTTCTAACTTTAAAAAGAGGTTCTGATTAAAAAACCTTTAGTTGACATATTTATATTTATTATGTTGACGAAGGTTAATGTGCTATTATGTTAATAATTTAAACCTTTATACATTTTGTTTATTTTATTGGTTTTTTAAAAGCAGAATTTCATGTCTGTGGAGATGCATATATAATGAGTCCAATCATATCAATTGTGACATAAACTTGGACATAATATGACCGTGTATGCATTACTGTAGGTAAAATTATATTCATTATTGCTTACAATTGTGAAAATATTATACCGTACGTATTTTGGCATATATATATATAATCTTTACATTAATATGGGTTATCTTACAAAAATTACACGCATTCTCCTCAAAAAACAATACATACACACACACACACACTTATTACTTATTTATTATACAGTAGTTATTAACGTTTTCTATTACTATTAAATCGAATTTATCCTTTGTCCACGTTCTCATTAAAAAATTATTTGAAAAAACAACTATGTATAAATTTAAAATTTAGCATTTAGTATATAATAGTTTGTGAGTATATGCAAGAGAATAAGTTAAATTAAATATGTATTCATTTTTCAAATTCAGTTTTTAAATTTGATGAGAAAGTCTAAAGCAGGTGGATGTTACATAGGGAGTGAGTGAGATATATCTGACAACTTTATGTGATGTTATTGCAGTAACATTCATTTGTCAAGGTAATACAATTCCAGTTTCTCTGGGTTGGCTAATATTTCCGAAAATAATATATTTCTTATCTTTTATTTTATTTTATTTTTGCAGTTGTGATTAACAAATATCTTTGCCTAGCATGCTCATCATTCATAATACACTTAAACAAGTGTATATACATACGAATGTGTACACTCTCTTAATATTTAAAAACATATAGTACTTTACTAACATATTAAAATATGTTTTATAAAAATCAAATGCAACATGTGAACATATTTCTGTAAAATAACTTAGTGAATATTAAAAATCATGAGTATATTTGTTTTAGAAAGAACCTATTAAAAAAATGTATCTTTGAAGTGTAGTTTGCCAAGGCCGAAATTGTAAGTTGATAAAATTTTATGAAAAATATAAATACATGCCTAGAGGCTATGGTCAAAACAAGCTTTTAAATAGCTGACAGCTAAAGTGTTTGATTGATAGTTAAAAAAAACTTGACATCAATAGTTTTCGTATTTGAATAGGCTGACGTTGTTAGGGTAGAAAAAATCAAACTAAGAAGCATTAAGTATGATAAAATAGTAATTAAAAAGCGATAAACACAGAAGAGAAGGATGATTGAGTGTGTGAGATAGATGGTGAAAGTAAAGAGAGGGGGAGAAAAGGTTGTGAGACTCGTATAGCAGTACACAAAATGTGGTCATTAAAATTTATTAGTCATAAAGAGAGACCCCATCCCCATGTGTAGAAAAAAAAAGGTGAAATCCATGATCCCCTACGATCGACCAGCAATTAAACAGCTAGAATTAATTTGTTGCTGCCAATTGTGTGCCTAATACGTGTTCATAGTGTGGCCACCTCACTCCCAACGTATCCTACCAAAACCCGTATACACCACCACGCTACTTCCCCACGCTTTATCTAATTCCCTTTTATTATTACACCACTATTTTTTATTAACCCCCCAATCCAGAAAAAAAAAACAACCTTTGCTTTCAGGTTTTGTTCCAACTCACTGTCTCACCTCTCTAACCCTTAATTATTACCAACGACCACGCACCACATCCACTTTCATCAATTTCCTTAATCTCCACATAACATCAGCAGCAAACAACCACAGCACAACCAACCAGCTAGTTCCTTCTATGTGCCTGTCTACAACAACAACTACTCCTACTACTAATTCTACTAATTCTACTAATTCTACA


Gene Sequence:
>Vu_30969(+)
ATGGATGGCAACCCTTTTGGAAACGTTCCACCACCACCAATACAAGTCCCTGATAACTTTCCTCACTCATCCTCCTCTTCGCCAACCCCAACCACGTCCTCTCCGTCTCCCACTCCTTCCGCCGGCTTCCGCTACAGGGGGACGCGCTCCCGTAGCGGTAAGTGGGTGTCGGAGATAAGGGAGCCACGTAAAACCACGCGCATTTGGCTGGGGACTTACCCGGCACCGGACATGGCTGCGGCGGCCTATGATGTCGCGGCTCTCGCGTTGAAGGGACCCGACACGCCCCTTAACTTCCCCAATTCCATACTCTCGTACCCGATTCCCGCGTCATTGTCTGCCACCGATATTCAAGCCGCGGCTGCGGCAGCAGCGCAGGCTAGGCTCGTGAGGGCGCCGCAGGAGAGTGGGCAGGCGGTAAACCCTGATATTGGACAGGAGTCGGAGAGGCGTGATGAGTACTATGATGAGGATGAGTTGTTGAACATGCCGAATTTGCTTGATGACATGGCCAGGGGAATGCAGGTTAGTCCCCCTAGGATCAGTTCCTTTTCTTCTGATGATTCGCCTGGCAATTCCGATGCAGATAACCTTTGGAGTTATACCCTCTGA

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1322635