Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_30935	LG8	42649147	42651993	hypothetical protein LR48	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	42649187	missense_variant	p.Ala14Val
T/C	42649200	synonymous_variant	p.Leu18Leu
G/A	42649286	missense_variant	p.Gly47Glu
T/C	42649290	synonymous_variant	p.Ser48Ser
G/A	42649330	missense_variant	p.Asp62Asn
C/T	42649632	synonymous_variant	p.Gly162Gly
C/A	42649798	missense_variant	p.Leu218Ile
T/C	42649847	missense_variant	p.Met234Thr
C/A	42649931	missense_variant	p.Pro262His
T/G	42650297	missense_variant	p.Met384Arg
A/T	42650466	synonymous_variant	p.Pro440Pro
T/A	42650633	missense_variant	p.Phe496Tyr
C/A	42650755	missense_variant	p.Pro537Thr
T/C	42651118	missense_variant	p.Trp658Arg
C/A	42651341	missense_variant	p.Ala732Glu
G/T	42651347	missense_variant	p.Arg734Met
A/T	42651356	missense_variant	p.Lys737Met
A/T	42651359	missense_variant	p.Gln738Leu
G/T	42651366	missense_variant	p.Leu740Phe
G/A	42651772	missense_variant	p.Gly876Arg
T/C	42651933	synonymous_variant	p.Asp929Asp
G/T	42651937	missense_variant	p.Val931Phe

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_30935.1

MRADSNVLFLVPLALLFLIAIPQLCLCANSTSDHTMEERQALESLKGSFSNSSMFVSWEGKDHCQWKGVQCDAITGHVVKLVLHWQKTCSYRRTGFVRTCSRQNSNGVHPSILDLKHLNYLELTGISFGNGPIPAFLASMNQLTHLNLSDCDFREKIPHQLGNLSNLQVLDFSGNPLDVDVDVDDLAWLSKLSSLKHLAMNGVGLGRAHNLLQVLDTLPFLLQVEFSGCDLTNMNFPAGHVNSTFLANVQVLSLAQNLLSDPVPDAFLNMSSIVDLNLGYNNLTTLPNWLVNFDALVNLNLSGNPFKRIEASVISILTNMCSLRSLDLSSSIPIFEGSGLGQGNYSGCGKYDLEVLVLRGNGIKDSLPSWFGQLSNLNILDLAMNLFYGPIPSSFGNLLALTTLDLSDNQLHGSIPATFGRLSSLGLLDLSNNHLNGSIPESLGQLRNLVTLRMVNNSFTGIISEIHLRNLSNLIEFQIGYNNLDLKTDSNWEPPFKHLQVLGMAYNNLTHFPQWVQTLEQLFTLDISNNQIRGNIPRDFGHHLPNLYRLNLRTNLIEGSIPDSLCEMENLFILDLSENRFSGTIPDCWVKQFFSVLNVASNRLSGTIPNSFGNLTVGWLNLSNNSLHGEPFQPLQSNEWLQILDLGENQFTGKIPSWWAAQTVLEILRLRGNLFSGDIPTSLCQYYNVKILDLADNNLSGSIPPCIGNFRGMMINGVEAPPAFTYDADEWAKRHFKQFLKGNEYDYTKKYAYPHLVNIDLSSNSLMGSIPAGVTSLSGLIGLNLSHNHLSGNIPSNIKKMQSLESLDFSNNNLSGPIPTDMSIMHNLGFLNLSNNNLSGSVPTNDHFLTFDNRSFAGNPHLCGEFLANKCSIGDGVPSHEDNNEIGDKKENVLFYLVIALGFITGFWAFFGTLFLRKDWRHAYFLYVDGVVDKMYVTIMVRVASVGS*

CDS Sequence:
>Vu_30935.1

ATGAGAGCGGACTCAAATGTTTTGTTCCTTGTGCCTTTGGCTTTGTTGTTCCTTATTGCAATTCCACAATTGTGCTTGTGTGCAAATTCAACCTCTGACCACACAATGGAAGAGCGACAAGCACTTGAAAGTCTCAAAGGAAGTTTCTCCAACAGCTCCATGTTTGTTTCTTGGGAAGGAAAGGATCACTGCCAGTGGAAAGGAGTGCAATGTGATGCTATCACCGGACACGTTGTCAAGCTTGTTCTCCATTGGCAAAAGACATGCAGTTATCGTCGAACCGGTTTTGTACGCACGTGCTCAAGACAAAATTCTAATGGCGTTCACCCTTCTATATTGGATTTGAAACACTTGAACTATCTCGAACTCACAGGAATTTCTTTTGGCAATGGTCCTATACCAGCATTCCTTGCTTCCATGAATCAGCTGACACATCTTAACCTCTCTGACTGTGATTTCAGGGAAAAGATTCCTCACCAACTCGGCAATCTTTCAAACTTGCAGGTTCTTGATTTCAGTGGAAATCCTTTAGATGTTGATGTAGATGTTGATGATCTGGCTTGGCTTTCAAAACTTTCATCACTGAAACACCTAGCAATGAATGGAGTGGGCCTTGGAAGGGCACATAATCTATTGCAGGTGCTTGATACCCTTCCTTTCTTGTTGCAAGTAGAGTTTAGTGGATGTGATCTTACCAACATGAACTTTCCTGCTGGCCATGTTAATTCTACGTTTCTTGCCAATGTTCAAGTTCTGAGTCTTGCTCAAAATTTACTTTCTGACCCTGTTCCTGATGCTTTTCTGAACATGAGTTCAATTGTAGACCTCAACCTTGGTTACAACAATCTCACTACACTTCCAAATTGGTTGGTTAATTTTGATGCTCTTGTCAATCTTAATCTTTCTGGTAATCCCTTCAAGAGGATTGAAGCCTCCGTGATATCTATCTTGACAAACATGTGCTCCCTCCGATCATTAGACTTGTCATCTAGCATACCTATTTTTGAAGGGTCGGGGCTAGGTCAGGGAAACTATTCGGGATGTGGAAAATACGATCTGGAAGTTTTAGTGTTGAGAGGAAATGGAATTAAGGACAGTTTGCCTAGTTGGTTTGGACAACTGTCAAATTTGAATATCCTTGATCTTGCAATGAATTTATTCTATGGTCCAATTCCATCATCCTTTGGAAATTTGTTGGCCTTGACAACATTAGATCTTTCGGATAATCAGCTACATGGGTCAATTCCTGCTACCTTTGGACGGTTGTCATCTTTAGGTTTATTGGATCTTTCTAATAATCACTTGAATGGAAGCATTCCAGAAAGCCTTGGACAACTGAGGAATCTAGTGACCTTAAGGATGGTTAATAACTCATTCACAGGTATCATATCAGAGATTCACCTTCGTAACCTCTCAAATTTGATAGAATTTCAAATAGGATACAACAATCTGGATTTGAAGACAGACTCCAATTGGGAACCACCTTTCAAGCATTTACAAGTCCTTGGAATGGCTTACAATAATCTGACACATTTTCCTCAGTGGGTTCAAACACTGGAGCAACTTTTTACATTAGACATCTCTAACAATCAGATTAGAGGAAATATTCCGAGAGATTTTGGTCATCATCTTCCAAACCTGTATAGGCTAAATCTCCGTACTAACCTTATAGAAGGTTCGATACCAGACTCATTGTGCGAGATGGAAAACTTGTTCATTCTCGATCTCTCAGAAAACAGATTTTCTGGCACAATTCCTGATTGTTGGGTAAAGCAGTTTTTCTCCGTCTTAAATGTGGCATCAAATCGGTTATCCGGCACCATTCCAAACTCATTTGGGAATCTTACAGTGGGATGGTTGAATTTGAGCAACAATAGCCTCCATGGAGAGCCTTTTCAACCCTTGCAAAGCAACGAATGGTTGCAGATTTTGGATCTCGGTGAGAATCAATTTACCGGAAAAATACCTTCTTGGTGGGCAGCACAAACTGTTCTTGAAATTCTGAGACTGCGGGGGAACTTGTTCAGTGGTGATATTCCGACATCTCTCTGCCAGTACTATAATGTAAAAATCCTGGACCTTGCTGATAATAATTTGTCAGGTTCAATCCCTCCTTGCATTGGTAATTTCCGGGGTATGATGATAAATGGAGTTGAAGCACCACCAGCATTCACTTATGATGCAGATGAATGGGCAAAAAGGCATTTCAAGCAATTCTTGAAAGGAAATGAATATGATTACACAAAAAAATACGCATATCCGCATTTGGTAAACATAGACTTGTCAAGTAACAGTCTCATGGGATCAATCCCTGCCGGTGTAACCTCTCTTTCAGGATTGATTGGCTTGAACTTATCACATAATCACTTGTCAGGAAATATCCCAAGCAATATAAAGAAAATGCAGTCGCTGGAGTCTCTGGATTTCTCCAACAATAACCTTTCTGGTCCCATCCCAACCGACATGTCCATCATGCATAATCTAGGTTTCTTAAACTTGTCCAACAATAATTTATCAGGTTCCGTTCCAACAAATGATCATTTTTTGACCTTTGATAATCGATCTTTTGCTGGCAATCCACATCTCTGCGGAGAATTCCTGGCGAATAAATGTTCCATCGGTGATGGGGTACCTAGCCATGAAGACAACAATGAGATCGGTGATAAGAAAGAAAATGTGTTGTTTTACTTAGTCATTGCACTTGGTTTCATAACAGGGTTTTGGGCATTCTTCGGAACTCTGTTTTTGAGAAAGGATTGGAGACACGCATACTTTCTTTATGTGGATGGGGTTGTGGATAAGATGTATGTAACAATAATGGTAAGAGTAGCAAGTGTTGGATCGTGA

Promoter Sequence:
>Vu_30935::LG8:42647147-42649147(+)

TCTTTACTTTCTTGTTTCTCATGTTCAGGGCTCCGGATACGTCAAAGGTGAGAGAGAAGATGGTGTATGCCAGCTCCAAGGACAGATTCAAGAGGGAACTTGATGGCATTCAGGTTGAGTTGCAAGCAACGGATCCCAGTGAGATGAGCTTTGATATCATAAAAGCAAGGGCAATATAATAATGTCATCCAATTATTAAGATTTCACCCTTTTCCCTACAGCTAGCTTTGGCGGCACTATTAATTTCTTTATTTGTTTGACTTCTGCTGTTTTTTTTTGTTCTTTTTGTCAACTGGCCTACATTGTAAACTGGTAGTTTAATATGATACCTAGAAAAGCACTGCCATGGATTACAGGCTATATCGAACAACCTTATTATTGTATACACTACATTCTTTGAAGGTACAACTGCATTCCACTGCAAGTCTATTATGATCTTGTGTTTCTTCTCCACACTTTTTCCCCTTGTAAATTTGCTAAGGTTAACTGTTGTGAAACATTAGAAAAGAACCCTTAGACGACTGTGTAATTTTATGAATAATTAGAATGAGCATATGATGGGAAACTTATGTTAACTCAAGGTAGAAGTTGAACTTATTGTCAAGCAATCTAAATAAAAAGGCCGATTAGAAAACTGTTTGACAGGAGCTCTGATACGATGTTAGAAATTAGAAGATGAATTTTAAACTTAACCTCATCAGAAAAATAAAGTTTGCATTGACTTCTATACTCTATTTTTGTCACATCATTAGATAACGAGGGAGAGCTTTTGATTATATGCTAAAATATTATTTGGTCTGAAAACATCTTTATATACACATATTTTGGCTTAGTCTGGTGTAAAGACACAAAACAACTGTACCACAAAGCACAGATCCAACATAGGAAACAGAACTATAATATATAAAAACAGGAAATTACTAGCCAGAGTTTGTTATTTGTGTCTCATTTTGGTTGAGATAGTAGGTCCCAGGATGGACATCTAGGTCTCGCAAATTATATACTTAGACAATGCAAGGGTACCGAGTTGATTTTTCCAGAACAGAGAAAAAAAAAAAGAAAAACAAGGAAAAGCTGAATGAAAAAACTTGCTTTGCATACCGCAGTTGCACTTTTTTATGTTTAGAAATCTAAAATAAGCAATTTAAGTATTCCTTTTGAATACAAATCCACTCCCTAAGCCCATGTAGAACCATGACTTTACTGCAGATCCACTCCCTGATCAGATTTTTGAATCTTCAAACCGCACATATGTTGTAGATAATGTATTAATGAATATGTGCAGTGAAATTGAGAGCTTAGACAAAGACACAGGAAAAACAATCAAGCAAGAGGAAACAAGCTCTCTAGTCCTTTTGAATATCGATAATGACAACACATTGTTTCTACATTAAAAAATTTCATGAGATTTTAGCCATGTTTATATTAAACAGTTACCAATATTATCTACCAGGCTTACACACATATACCAAGGAAAATCCCTTAAATTTAGTATGATAAGAACACTCACAGGAATATAAAATTAGTAGTTTATATTAGGGTGATAATAGTCTGCTTACACATCTAAATGATCGTGCTTCTTTACCATTCTTTGAAATGTCCAGTACGAAATTAAATAATTCTTTTCTCTTTCAAACTAAGTATTCAATTTCTTAAGTTTATTTTCTTTACTAATTTCAGTCAACATTTGTTTTTTAATTAACTTTTAGTAAGTTTCCTTGCCGGCTTCGTAAATGTGAACAAGAAGACTTGATTCAAAAATTCATTTTTCTTCAGCTACCCCGAAGATAATGATCGATTCCGTTATCCAAAATTCACGAAAACCTTTTTAGTTTACGACCTTGAACAGCCATCTAGACCAAGTCCCCACAAATTACTATCGCGTTGACTCGTCTACTTCCCCCCAAAAAAACTGTTTCTTATGAAAACAACCACAAAGTATAACATGATTTTCGAATTTCAGTTCTTCTATCCAAGAAAACTGCGCTTATTGGCAAACA

Gene Sequence:

>Vu_30935(+)