Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_30904 LG8 42312402 42314536 PREDICTED: scarecrow-like protein 8
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 42312528 missense_variant p.Ala8Thr
T/A 42312669 missense_variant p.Ser55Thr
C/A 42312689 missense_variant p.His61Gln
C/T 42312698 synonymous_variant p.Ser64Ser
T/A 42312721 missense_variant p.Leu72His
T/C 42312917 synonymous_variant p.His137His
T/G 42312959 missense_variant p.Ser151Arg
T/G 42312967 missense_variant p.Leu154Arg
C/T 42312983 synonymous_variant p.Phe159Phe
T/C 42313085 synonymous_variant p.Asp193Asp
T/A 42313150 stop_gained p.Leu215*
G/A 42313333 missense_variant p.Arg276Gln
C/G 42313336 missense_variant p.Pro277Arg
T/C 42313385 synonymous_variant p.Ala293Ala
C/T 42313571 synonymous_variant p.Asn355Asn
G/A 42313778 synonymous_variant p.Glu424Glu
T/C 42314015 synonymous_variant p.Leu503Leu
C/A 42314217 synonymous_variant p.Arg571Arg
A/G 42314249 synonymous_variant p.Lys581Lys
T/A 42314268 missense_variant p.Cys588Ser
T/A 42314352 3_prime_UTR_variant
T/A 42314367 3_prime_UTR_variant
A/G 42314372 3_prime_UTR_variant
T/G 42314527 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_30904.1
MSPPGFPAAGPSDFYGGATGFPTQSMAVTPTIDNHSATTHHPLYRSQPSIMLHPSSNIPKHQTSSLIGKRTLAEFQTHNLTNTISNNLLVSNNNNQLLTNYQFRSVKPRTFQHNQFPTFSPELAALPSHRYGASLLHHIRPNALNPQPVTSSILSHTNFSPVQNRLTATLESEKNFIDHRLQELEKELLEDNDDDQSDAVSVVTTSEWSHTIQNLITPPKRASSSPSSSTTTTSSNSSVESINVIQSLTEVAKAISEERFEVATQILTRFSQNSDRPFVNCMVSALKSRMSHAEYPPPVEELFGREHAESTQLLFEHSLFFRVALMVANIAILESAFDDKTQNPKLCVVDFDIGNGKQYASLLHELSLRRKGYPAVVKIIAVTENSADERMSSAGVMLGRLAEQLGIGFEFKVLTQRIAELTRESLGCEADEALAVNFAFRLYKMPDESVSTENPRDELLRRVKALAPRVVTLVEQESNTNTAPFVARVAESCAYYGALFDSLETTMTRENSWRIKMEEGLRRKIANTVACEGRERVERCEVFGKWRARMDMAGFRLKPLSQRVAESIKERLGGENRVTVKVEKGGICFGWMGRTLTVASAWC*


CDS Sequence:
>Vu_30904.1
ATGTCGCCGCCGGGGTTCCCTGCTGCTGGACCCTCCGATTTCTACGGCGGAGCAACCGGATTCCCTACTCAATCCATGGCAGTTACACCCACCATCGACAACCACTCCGCCACAACTCACCACCCTCTCTACCGATCCCAACCTTCAATTATGCTTCATCCCTCCTCCAACATACCCAAACACCAAACATCCTCTCTCATCGGGAAACGCACCCTCGCAGAATTCCAGACCCACAACCTCACTAACACCATCAGCAACAACCTTCTTGTTAGCAACAACAATAACCAACTCCTTACCAACTATCAATTTCGTTCCGTAAAGCCCAGAACTTTTCAACACAACCAATTCCCCACGTTCTCTCCTGAATTAGCTGCCTTACCGTCACACCGTTACGGCGCCTCTCTTCTCCATCACATTCGCCCTAACGCTCTTAACCCACAACCTGTCACGAGTTCGATCCTGTCTCACACAAATTTCTCTCCAGTTCAAAACAGGCTAACCGCGACCCTTGAATCAGAGAAGAACTTCATAGACCACCGACTCCAGGAGTTGGAAAAAGAACTTCTAGAAGACAATGATGATGACCAAAGCGACGCCGTTTCAGTCGTTACCACCTCTGAATGGTCACACACAATACAGAACTTAATCACTCCGCCCAAACGTGCCTCGTCATCACCATCTTCCTCTACCACTACCACGTCGTCCAACTCCTCCGTAGAATCCATCAATGTCATACAGTCCCTGACGGAGGTCGCGAAAGCGATTTCAGAAGAGAGATTCGAGGTCGCCACGCAGATCCTTACCCGATTCTCGCAGAATTCGGATCGACCCTTCGTAAATTGCATGGTTTCCGCGCTCAAGTCGCGAATGAGTCACGCTGAGTATCCACCACCTGTTGAGGAATTGTTCGGCAGGGAACACGCCGAGTCCACTCAGTTGCTATTTGAACACTCGCTCTTCTTTAGGGTCGCGCTCATGGTAGCCAACATCGCAATCCTCGAATCTGCATTCGACGATAAAACACAGAACCCCAAACTATGCGTGGTGGATTTCGACATCGGGAACGGGAAACAATACGCCAGCCTTCTCCACGAGCTCTCTTTGCGGCGAAAGGGCTATCCGGCCGTCGTCAAGATCATCGCCGTTACGGAGAACAGCGCTGACGAGAGGATGAGTTCTGCGGGCGTGATGCTCGGAAGACTCGCAGAGCAACTCGGGATTGGTTTCGAATTCAAAGTGCTGACTCAGAGAATCGCCGAGTTAACTCGCGAGTCTTTGGGTTGCGAAGCGGATGAGGCGCTGGCGGTGAACTTCGCATTCAGACTTTACAAAATGCCCGACGAGAGTGTCTCCACGGAGAACCCGCGCGACGAACTTTTGCGGCGCGTGAAGGCACTCGCGCCGCGAGTGGTGACGCTGGTGGAGCAGGAATCAAACACCAATACAGCGCCCTTCGTGGCTCGCGTGGCCGAGTCGTGCGCGTATTACGGCGCGCTGTTTGACTCGCTTGAGACTACGATGACACGGGAAAACTCGTGGCGAATAAAAATGGAGGAGGGACTGAGGCGGAAGATAGCGAACACAGTGGCATGCGAAGGAAGGGAGCGCGTGGAAAGGTGCGAAGTGTTTGGAAAGTGGCGCGCGCGCATGGACATGGCTGGTTTCAGGTTGAAACCACTGAGTCAGAGAGTCGCTGAGTCAATCAAAGAACGACTCGGTGGTGAGAACCGGGTGACAGTAAAAGTAGAAAAGGGTGGGATTTGCTTTGGGTGGATGGGAAGAACCCTGACCGTGGCTTCTGCTTGGTGTTAA


Promoter Sequence:
>Vu_30904::LG8:42310402-42312402(+)
CTATGAGTTGAAGCAGTGTTTTTTAATTGTCAAATTTAATATGTGTCAGTGCATAATCATGCATATTTGATCGTTTTAAACATGTTCTCTTCTTTATAGTTGTTACTACTCAACCAACATGAGAAGACACATAGTGAGATCACACTCCTCAAGTGATACACTCCAAAAAAATATTACATATTTAAATTGGCAATGGTGTTAGCATGATATTGTTCACTGTCATACGATGTATGTAAAAATTATATATATAAACAAAGTAGTTGTAAACTCTAGTAATTATTATATATAAAAATTTGTTTTTTTTTTAAAACTCGTATCATCAATAATTTGGTATATATATTATATTATGTTTATTATTTTAGATAATATATTAATATTATATATTTTTAATTATATTTTGCTTTATTAGTTTTATAATATTTTATTTAATAGCTTAATATTACTAAATGAAATATTAGTAAAAGAAATAAAAGTATAATAATAACTAACATTTTTTTCAAAAATACAATTTCAAATTACTTATAACGCCAAAAAGAAAATCAACTCAAAAATTAAAACTAATTAAAAAGCTGTTACAGTCTTCAGTATTGTCTAGTAAATGAATTAGTACCTTATAGTATTATTTGAAATGAATATTTAAAAAATACTATTTTTTTGTTTTTTTATATTTTAAATGTCAATTATTATTTTAATATTTATATTTTTTCTGTATGAGGTAAAATTTTATTTTTGTCGTAACTATTAAATATAAAAATAACAATTATTATGTGTTCTGCATAAACTAAAATACTAGTTATAAAAATACATAATTTAAATAATTTGTTTAGCTCATAAAAATATTTGTTATGGATATTTAAAATTTAAAAAGTTTTAAATGAAATTGAATTGTTTTAAAGTAACAAGTTGTGTAGTGTTAAAAAATATCACAAAAAACTTAATGTAAGAAAAATCACACTAGCTGTGGAGAAATTTTTGCGCAAAAAAACTATTGTTTAAAAAAAATCAAAATTATAAAATTAAATAAAGCCATCAGTCAATCAAATTTAATCAATAATAATTTTTCCCCAATCATAGCCCAAAATTAATAATTACTTGTTTAGTTTAATAAATATTTGATTACTTTTTAATTCTTTATATCATAGATGTTAATGCTCTGTACCAACTTTCTTCAAAATCTTACTATTTATTTTTAACATTTACTTTACTTTTCATGGAAAAAATCATCTTTTTGAACCTAGTTCAATATGTATTGTTATAGAAATTTAATATGAATTTCTTAGTTATGTAAAAAGTATTAAGTTTCACTTTTCAAGAGCAGGGATTGCAACATCAAAAATAAAAATGACAGGATTAATAAAATAATCAAAATAAATTTATAATAAACTCAAATATATTTTCATAAAACACATTGAAACACATGTTAGCCACCAAAGTTCACAAACCAAATGCATGATAAAAAATTAAGCCACTAATTCATTATGAAAAGTGAAGATTCTTTGGGAACTCTAAACATTATTGGTTAACTATAATTAAGAAAATAACTATATAAAAAGAGCGATATCTTAAAATGAAAAAAAAATTAAATACTATTTAAAAATTTAATTAATACATTTAAAGCCTTAGAAAGTATAAAATAAAATTTTTAATAGGTGAAAAAGTTAAGAGCACAAGAGAATAATTTGATGAAATTGATAGTGATAAAATGATGAGAAGTTGTAATAGTAATGGAAGGGCGCGTGAGGATTGGAATTGCGTTAGTCGAGGAAGTTGTCACTCAGGAGTTGAAGTTTGTTATAATTGAATAAGATACGACTGCCTCTAGCTTCCTATGGAATTGATCACGGTCCGTCGAAGAGATGGAATTTAGAATCTAAACGAATCCAACGGTAGTGAGGTCAGGATGCAATCTAAAATGAGAAGAAAAAAAAAAAAAAAAAAAAAAAAAGCCTTCACTCGCTTTCTTGATCAAATTTAAAACCCCTCTGTCGTTATATTCACCA


Gene Sequence:
>Vu_30904(+)
AGAATCATTCAAACATTTCAATTCAACTTCATCTCTCTCCCATGCCTTCCTCCAAAATCCTAACTTTTTAATCCCTTCCTTAATTTCTTCGCCACAAAACCTGGGATGTCGCCGCCGGGGTTCCCTGCTGCTGGACCCTCCGATTTCTACGGCGGAGCAACCGGATTCCCTACTCAATCCATGGCAGTTACACCCACCATCGACAACCACTCCGCCACAACTCACCACCCTCTCTACCGATCCCAACCTTCAATTATGCTTCATCCCTCCTCCAACATACCCAAACACCAAACATCCTCTCTCATCGGGAAACGCACCCTCGCAGAATTCCAGACCCACAACCTCACTAACACCATCAGCAACAACCTTCTTGTTAGCAACAACAATAACCAACTCCTTACCAACTATCAATTTCGTTCCGTAAAGCCCAGAACTTTTCAACACAACCAATTCCCCACGTTCTCTCCTGAATTAGCTGCCTTACCGTCACACCGTTACGGCGCCTCTCTTCTCCATCACATTCGCCCTAACGCTCTTAACCCACAACCTGTCACGAGTTCGATCCTGTCTCACACAAATTTCTCTCCAGTTCAAAACAGGCTAACCGCGACCCTTGAATCAGAGAAGAACTTCATAGACCACCGACTCCAGGAGTTGGAAAAAGAACTTCTAGAAGACAATGATGATGACCAAAGCGACGCCGTTTCAGTCGTTACCACCTCTGAATGGTCACACACAATACAGAACTTAATCACTCCGCCCAAACGTGCCTCGTCATCACCATCTTCCTCTACCACTACCACGTCGTCCAACTCCTCCGTAGAATCCATCAATGTCATACAGTCCCTGACGGAGGTCGCGAAAGCGATTTCAGAAGAGAGATTCGAGGTCGCCACGCAGATCCTTACCCGATTCTCGCAGAATTCGGATCGACCCTTCGTAAATTGCATGGTTTCCGCGCTCAAGTCGCGAATGAGTCACGCTGAGTATCCACCACCTGTTGAGGAATTGTTCGGCAGGGAACACGCCGAGTCCACTCAGTTGCTATTTGAACACTCGCTCTTCTTTAGGGTCGCGCTCATGGTAGCCAACATCGCAATCCTCGAATCTGCATTCGACGATAAAACACAGAACCCCAAACTATGCGTGGTGGATTTCGACATCGGGAACGGGAAACAATACGCCAGCCTTCTCCACGAGCTCTCTTTGCGGCGAAAGGGCTATCCGGCCGTCGTCAAGATCATCGCCGTTACGGAGAACAGCGCTGACGAGAGGATGAGTTCTGCGGGCGTGATGCTCGGAAGACTCGCAGAGCAACTCGGGATTGGTTTCGAATTCAAAGTGCTGACTCAGAGAATCGCCGAGTTAACTCGCGAGTCTTTGGGTTGCGAAGCGGATGAGGCGCTGGCGGTGAACTTCGCATTCAGACTTTACAAAATGCCCGACGAGAGTGTCTCCACGGAGAACCCGCGCGACGAACTTTTGCGGCGCGTGAAGGCACTCGCGCCGCGAGTGGTGACGCTGGTGGAGCAGGAATCAAACACCAATACAGCGCCCTTCGTGGCTCGCGTGGCCGAGTCGTGCGCGTATTACGGCGCGCTGTTTGACTCGCTTGAGACTACGATGACACGGGAAAACTCGTGGCGAATAAAAATGGAGGAGGGACTGAGGCGGAAGATAGCGAACACAGTGGCATGCGAAGGAAGGGAGCGCGTGGAAAGGTGCGAAGTGTTTGGAAAGTGGCGCGCGCGCATGGACATGGCTGGTTTCAGGTTGAAACCACTGAGTCAGAGAGTCGCTGAGTCAATCAAAGAACGACTCGGTGGTGAGAACCGGGTGACAGTAAAAGTAGAAAAGGGTGGGATTTGCTTTGGGTGGATGGGAAGAACCCTGACCGTGGCTTCTGCTTGGTGTTAATTGCTCAACTCAACTTTTCACTTTTTTTTTAATTTATTTTTTTTATTTTCTAAAGTTATTATATACCCATTGTTAGTTATTCTATGTTACCTAGACATTATTTTCCTCCTTCTACCAAACAGGTAAATAAAAAAAGTACAACATTTATGTGTCTTGTTGCAGCATTTATGAATATGATCATTCCTTTATGTACTTTTATCATTTTCACTTTCAGTTCT