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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_30900 LG8 42287662 42290577 PREDICTED: probable receptor-like protein kinase At5g24010
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/G 42287880 3_prime_UTR_variant
T/A 42287886 3_prime_UTR_variant
G/C 42287931 3_prime_UTR_variant
G/T 42287990 missense_variant p.Ser806Tyr
C/A 42288078 missense_variant p.Ala777Ser
T/C 42288110 missense_variant p.Glu766Gly
G/A 42288280 synonymous_variant p.Gly709Gly
T/C 42288697 synonymous_variant p.Leu570Leu
C/A 42288723 stop_gained p.Glu562*
A/T 42288740 missense_variant p.Leu556His
T/C 42288940 synonymous_variant p.Leu489Leu
G/T 42289038 missense_variant p.Leu457Ile
G/A 42289039 synonymous_variant p.Ser456Ser
A/G 42289041 missense_variant p.Ser456Pro
C/A 42289045 synonymous_variant p.Gly454Gly
A/T 42289061 stop_gained p.Leu449*
T/C 42289068 missense_variant p.Thr447Ala
T/C 42289255 synonymous_variant p.Ala384Ala
G/C 42289363 synonymous_variant p.Val348Val
T/C 42289380 missense_variant p.Thr343Ala
C/G 42289549 missense_variant p.Arg286Ser
C/T 42289550 missense_variant p.Arg286Lys
C/A 42289574 missense_variant p.Arg278Met
C/T 42290050 synonymous_variant p.Ser119Ser
T/C 42290164 synonymous_variant p.Thr81Thr
C/T 42290178 missense_variant p.Ala77Thr
G/T 42290231 missense_variant p.Ser59Tyr
A/C 42290236 missense_variant p.Phe57Leu
A/G 42290351 missense_variant p.Phe19Ser
C/T 42290397 missense_variant p.Val4Ile
A/G 42290464 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_30900.1
MNTVFLIPSILLLLLLTPFSLSFSPTDNFLLSCGSHNNASLFNRVFTGDSTNPGSNFLSSGDSVSLAYQKPPQNLPALYHTARVFSSSGSYRFNMKKNGTHFVRFHFSPFKAQSFDLKSANFSVFVNGASVLSNFQPPNDVLLKEFILNIESNFLEILFRPVGDSGFAFVNALEVFTAPADFVIDFGGRAVGPSGVEEYRNLSSKVLETVHRINVGGLKITPFNDTLWRTWIPDEDYLVFKGAAKPAVSTHIPNYQKGGATREIAPENVYMTAQQMNRENSSLASRFNITWNFPVSPGGVPHLVRLHFCDIVSPALNLLYFDVYINGYIAYKDLDLSALTIHTLASPVYVDFVTNSDDSGFVQVSVGPSELSSSIRMNAILNGAEIMEMLNDVSTKVVHRKKNLWVLVGSVVGGIVVFFLVVTAFLLGTKCRNKKPKPRTLESVGWTPLSMFGGSSLSRSSEPGSHGLLGLKIPFAEIKSATNNFDRNLIIGSGGFGMVYKGVFRDNTKVAVKRGMPGSRQGLPEFQTEITVLSKIRHRHLVSLVGFCEENSEMILVYEYVEKGPLKKHLYGSSRQTPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDEDYVAKVADFGLSRSGPCIDETHVSTNVKGSFGYLDPEYYRRQQLTDKSDVYSFGVVLFEVLCGRPAVDPQLAREQVNLAEWALEWLKKGMLDKIVDPHLVGQIQQDSLKKFCETAEKCLSEYGVDRPAMGDVLWNLEYALQLQESEQQREPHANSSASEAASLTSTVIPGNPSTNTRAERDYDNFSSDVSTSQVFSQLMNNEGR*


CDS Sequence:
>Vu_30900.1
ATGAACACCGTATTCCTCATACCCTCTATCCTTCTCCTTCTCCTTCTCACACCCTTCTCACTTTCATTCTCTCCCACAGATAACTTCCTTCTCAGTTGTGGATCACACAACAATGCTTCCCTCTTCAACAGAGTCTTCACGGGCGATTCCACCAACCCAGGTTCCAATTTTCTCTCTTCAGGTGATTCTGTTTCACTCGCATATCAAAAGCCACCTCAGAATTTGCCCGCTTTGTACCATACAGCAAGAGTTTTCAGCAGCAGTGGGAGCTACAGGTTCAATATGAAGAAAAACGGCACCCACTTTGTTCGTTTTCATTTCTCCCCCTTCAAGGCTCAAAGTTTTGATCTAAAATCGGCAAACTTTAGTGTCTTTGTTAATGGGGCTTCGGTGCTGAGCAATTTCCAGCCACCTAATGATGTGCTTCTCAAAGAGTTCATTCTAAACATAGAGTCAAACTTTCTTGAGATTTTGTTTAGGCCTGTTGGTGACTCAGGTTTTGCCTTTGTCAATGCTTTGGAGGTGTTTACTGCCCCTGCGGATTTTGTCATAGATTTTGGAGGCAGGGCGGTTGGTCCTTCTGGGGTGGAAGAGTACCGAAACCTTTCATCTAAGGTTTTGGAAACTGTTCATAGGATCAATGTTGGGGGTTTGAAAATAACTCCTTTCAATGACACCCTTTGGAGGACTTGGATTCCTGATGAGGATTATTTGGTGTTTAAGGGTGCAGCAAAGCCTGCAGTGAGCACTCACATACCAAATTACCAGAAGGGAGGTGCAACTAGAGAGATTGCACCTGAAAATGTTTACATGACTGCTCAGCAGATGAATAGGGAAAACTCAAGTTTGGCTTCTAGGTTCAACATAACCTGGAACTTTCCTGTGTCTCCTGGTGGTGTTCCACACTTGGTTCGATTGCATTTCTGCGATATTGTTAGTCCTGCTCTCAACTTGCTCTACTTTGATGTGTACATCAATGGGTACATTGCATACAAGGATCTTGATTTGTCAGCGCTTACCATCCACACGCTTGCATCACCTGTCTATGTGGATTTTGTTACAAATTCAGATGACTCGGGTTTTGTTCAAGTGAGTGTTGGTCCTTCTGAGCTAAGCAGTTCCATAAGGATGAATGCCATATTGAATGGTGCAGAGATAATGGAGATGCTCAATGATGTCAGTACTAAAGTTGTGCATAGGAAGAAGAATTTGTGGGTGTTGGTGGGTTCAGTTGTTGGAGGAATTGTTGTCTTTTTTTTAGTTGTAACTGCTTTTCTACTTGGTACCAAATGCAGGAACAAGAAACCAAAACCAAGGACATTGGAAAGTGTTGGATGGACACCTTTAAGCATGTTTGGAGGGAGTTCCCTCAGTAGAAGCTCCGAGCCTGGTTCACATGGACTTCTTGGCTTGAAGATCCCTTTTGCTGAAATAAAATCAGCAACAAACAACTTCGATAGAAATTTAATTATAGGGTCTGGTGGGTTTGGTATGGTCTACAAAGGAGTGTTCAGAGACAATACGAAGGTTGCTGTCAAGAGAGGCATGCCAGGGTCCAGACAAGGCCTTCCCGAGTTCCAAACTGAGATAACTGTTTTGTCCAAAATTCGCCATCGCCACCTTGTTTCACTGGTTGGTTTCTGTGAAGAAAATTCAGAAATGATACTTGTCTATGAGTATGTTGAAAAGGGTCCGCTGAAGAAGCATTTATATGGCTCATCACGACAAACACCTCTCTCTTGGAAGCAGCGTCTTGAAATATGCATTGGTGCAGCCAGAGGTCTTCACTATCTTCACACTGGCTTTGCTCAAGGAATCATCCACCGTGACATTAAATCAACCAACATATTGCTTGATGAAGACTATGTGGCCAAGGTTGCTGACTTTGGTCTTTCAAGGTCAGGACCGTGCATCGATGAAACACATGTGAGTACTAATGTGAAAGGTAGTTTTGGTTATCTTGATCCTGAGTATTACCGGAGACAGCAGCTTACGGATAAGTCAGATGTTTATTCATTTGGTGTAGTGCTTTTTGAGGTTCTTTGTGGCAGACCTGCTGTTGATCCACAATTAGCTAGAGAACAGGTCAATTTGGCAGAATGGGCACTTGAGTGGCTGAAGAAAGGCATGCTGGACAAAATTGTTGACCCCCATCTTGTTGGACAAATCCAACAAGACTCCTTAAAAAAATTTTGTGAAACTGCAGAGAAATGTTTGTCTGAGTATGGAGTTGATAGACCAGCTATGGGTGATGTCTTATGGAATTTGGAGTATGCACTTCAGCTCCAAGAAAGTGAACAACAAAGGGAGCCACATGCCAACAGCAGTGCTAGTGAAGCTGCAAGTTTGACCAGTACAGTTATTCCTGGAAATCCTTCTACCAACACAAGAGCAGAGAGGGATTATGATAATTTTTCTTCTGATGTTAGTACTAGCCAAGTGTTTTCCCAGCTAATGAACAATGAAGGTAGATAG


Promoter Sequence:
>Vu_30900::LG8:42290577-42292577(-)
TTCTAACGTCTCATCATAAAAAACCTCATAATGTGATAATCTGGTAGATGATATGCTTGTGGTGCTTATTATGGACTTTGATAAATTAATTTTTTTTCGTGTACCTTTTTGCTTCTTCTTGGATTGCAGTAATCTTTAAGTAAACTTGAAGCACGTTAAACTTTGCAGAGTCTATGTCAAGCTTTTCGTAAGCTTAAGCTTAAAGGCTGCCTTAAAAAACAAGTATATATAAGCTAATCACATGGATGTAGTCAAAGAGCATATTAAGAATTCAAACTTATGGTTGAACAAGGACATCAACGGCCGAAAATACTTTTGTTTTTCTTAAATTAGGTTTTTTTTTTTTAAGAAAAAGATTAACGTAAGAGTAGTGGACATGTGACCTTTTAGTACCAAGCAGGTGCCAGAAAGCAAAAGTAGTGGCAGAATATGCGCAAGGGTCTTTTGGAATAAGCGACAACATAAACCACTGCACTAATCAACGTGAACCATACAAAAAACAATGGTCCATACATGCATGCATACAGCCAGTGTAAAAAGCCAAAAGTGTTAATTAATATTTTTCAGCTTCTACTTTTTAACTATTTCATTCTATACAATTTGCAAATGCTTTTTTTCTTTCTCTCTCTCTTTTAATCATTCTAATAATTGTACTAATAATGATGTCATTTTGAGTAATGCTGAGCTATGGCTTCAAGCAACCGTATTTCCCTTTGTGCCGACATGTGAAAAATGACCTTAATTTCTACAAAATAGACTAATGCATGTGGGAGGAAAAAATCTAGTGCTGTTGACCGAGGCCATGTGATGTGTGACAAGAAGATTTATAATTTCCACTGAGTTGTGAGGATCGTATTAAGAGGTGCAAAGAATAAATTAATCAGCACTGTTTAGTAAAGCTGGCATGCACTATACATGCATATGCCCTTTTGCACTGGAAGACATTAACAATATAATTTGCTTTCTACTACATCATAAGATAAGGTTCCAGAGACGCGTGCAAACAATATGTGGTTTCCAATTGGAGATTCCCGTCTGAAACCTACATAATCTGACCCCTTATCAACAAATTTGTCAAATACCTATCTTTTCACACCCTACGTGAATCCAAGGTGTTTGAAAAAAAGGGATACATATATAATTGTTTATGCAGTCTTTCATGTCACAAAATCTGATAACGAATTAGAAGGATACATTGAGAGATATAAGAGAAAGTAGAACACTGTATAAAAGTGAAAGATTTATTAATTTATTGTTTTAAGGTTTTGGATAAAGAGTGATGTAAATACTTTATTTGATTGAGTTCTAATGTCATTTGTGTTTGTGTTTCAAATGAATCTCTTCCTTAATTTAAAGTATTTCTTATAAAGGATATTTAGGTTATTTATTGAACATATATGTTTATATGATACTATAAATATGTTTTCTTTTCTTGCAGAAATTTAGTCCTGTATATACAAATCTTAGATTACGTGCATTTTATACAAACGATTGAAGACGATGCTACATTTACTTTTGTCGTTTTTATAGATTTTTTTGCCATGTAAAACTATCTTTGCTTGTAACCTTTTAAAAGTATCTCCTATAAGTTACCAAAAGTATTCATTAACCTTTTGTTCCAACTGTTGCTTGTTTAACTCACCTGTAAACGTTTTCCACTCATTAAATTTTTCTTTTGCGCTACGATGTCACAGCTATGTTCACTACAGGTAATTCTGTTCCCACATCAATATTCGAATTTGTGCCCAGAAGTTTAGATGAAACAACCTGTATCAGTATTTTAGATCTGCATGCGACTAACATTGTAATTCGTTAAAATCAACCGTTATATGAAGTGGAGCGCCGAGAAAACTAATGCAGATTTGTGAGAAACGTCCAAAAATGTTGAGTTTCAAATCAACTAACCATAAAAAGCAAATGCAAGAGTAGGTGTTATCCTTTGACTTGTGCTTACCAAATTCATGTACTATATATCATATCTTCCTTCTCAAATCTTCGCT


Gene Sequence:
>Vu_30900(-)
GGGACTTAAGTCGCTGTCTCTCTCTGTGTCTGTTGTCTTCTTGTTGCAGTTCTGTCCACACATCACACTTCCCTTTTGCATCCTCAAACTAGATACTACTCATGGCATGTGTTTTCCTCCGCGTGACACACTCTTGAAGGAATCGAAAGGCCAAAATCAAAACTTTCTTCAATGAACACCGTATTCCTCATACCCTCTATCCTTCTCCTTCTCCTTCTCACACCCTTCTCACTTTCATTCTCTCCCACAGATAACTTCCTTCTCAGTTGTGGATCACACAACAATGCTTCCCTCTTCAACAGAGTCTTCACGGGCGATTCCACCAACCCAGGTTCCAATTTTCTCTCTTCAGGTGATTCTGTTTCACTCGCATATCAAAAGCCACCTCAGAATTTGCCCGCTTTGTACCATACAGCAAGAGTTTTCAGCAGCAGTGGGAGCTACAGGTTCAATATGAAGAAAAACGGCACCCACTTTGTTCGTTTTCATTTCTCCCCCTTCAAGGCTCAAAGTTTTGATCTAAAATCGGCAAACTTTAGTGTCTTTGTTAATGGGGCTTCGGTGCTGAGCAATTTCCAGCCACCTAATGATGTGCTTCTCAAAGAGTTCATTCTAAACATAGAGTCAAACTTTCTTGAGATTTTGTTTAGGCCTGTTGGTGACTCAGGTTTTGCCTTTGTCAATGCTTTGGAGGTGTTTACTGCCCCTGCGGATTTTGTCATAGATTTTGGAGGCAGGGCGGTTGGTCCTTCTGGGGTGGAAGAGTACCGAAACCTTTCATCTAAGGTTTTGGAAACTGTTCATAGGATCAATGTTGGGGGTTTGAAAATAACTCCTTTCAATGACACCCTTTGGAGGACTTGGATTCCTGATGAGGATTATTTGGTGTTTAAGGGTGCAGCAAAGCCTGCAGTGAGCACTCACATACCAAATTACCAGAAGGGAGGTGCAACTAGAGAGATTGCACCTGAAAATGTTTACATGACTGCTCAGCAGATGAATAGGGAAAACTCAAGTTTGGCTTCTAGGTTCAACATAACCTGGAACTTTCCTGTGTCTCCTGGTGGTGTTCCACACTTGGTTCGATTGCATTTCTGCGATATTGTTAGTCCTGCTCTCAACTTGCTCTACTTTGATGTGTACATCAATGGGTACATTGCATACAAGGATCTTGATTTGTCAGCGCTTACCATCCACACGCTTGCATCACCTGTCTATGTGGATTTTGTTACAAATTCAGATGACTCGGGTTTTGTTCAAGTGAGTGTTGGTCCTTCTGAGCTAAGCAGTTCCATAAGGATGAATGCCATATTGAATGGTGCAGAGATAATGGAGATGCTCAATGATGTCAGTACTAAAGTTGTGCATAGGAAGAAGAATTTGTGGGTGTTGGTGGGTTCAGTTGTTGGAGGAATTGTTGTCTTTTTTTTAGTTGTAACTGCTTTTCTACTTGGTACCAAATGCAGGAACAAGAAACCAAAACCAAGGACATTGGAAAGTGTTGGATGGACACCTTTAAGCATGTTTGGAGGGAGTTCCCTCAGTAGAAGCTCCGAGCCTGGTTCACATGGACTTCTTGGCTTGAAGATCCCTTTTGCTGAAATAAAATCAGCAACAAACAACTTCGATAGAAATTTAATTATAGGGTCTGGTGGGTTTGGTATGGTCTACAAAGGAGTGTTCAGAGACAATACGAAGGTTGCTGTCAAGAGAGGCATGCCAGGGTCCAGACAAGGCCTTCCCGAGTTCCAAACTGAGATAACTGTTTTGTCCAAAATTCGCCATCGCCACCTTGTTTCACTGGTTGGTTTCTGTGAAGAAAATTCAGAAATGATACTTGTCTATGAGTATGTTGAAAAGGGTCCGCTGAAGAAGCATTTATATGGCTCATCACGACAAACACCTCTCTCTTGGAAGCAGCGTCTTGAAATATGCATTGGTGCAGCCAGAGGTCTTCACTATCTTCACACTGGCTTTGCTCAAGGAATCATCCACCGTGACATTAAATCAACCAACATATTGCTTGATGAAGACTATGTGGCCAAGGTTGCTGACTTTGGTCTTTCAAGGTCAGGACCGTGCATCGATGAAACACATGTGAGTACTAATGTGAAAGGTAGTTTTGGTTATCTTGATCCTGAGTATTACCGGAGACAGCAGCTTACGGATAAGTCAGATGTTTATTCATTTGGTGTAGTGCTTTTTGAGGTTCTTTGTGGCAGACCTGCTGTTGATCCACAATTAGCTAGAGAACAGGTCAATTTGGCAGAATGGGCACTTGAGTGGCTGAAGAAAGGCATGCTGGACAAAATTGTTGACCCCCATCTTGTTGGACAAATCCAACAAGACTCCTTAAAAAAATTTTGTGAAACTGCAGAGAAATGTTTGTCTGAGTATGGAGTTGATAGACCAGCTATGGGTGATGTCTTATGGAATTTGGAGTATGCACTTCAGCTCCAAGAAAGTGAACAACAAAGGGAGCCACATGCCAACAGCAGTGCTAGTGAAGCTGCAAGTTTGACCAGTACAGTTATTCCTGGAAATCCTTCTACCAACACAAGAGCAGAGAGGGATTATGATAATTTTTCTTCTGATGTTAGTACTAGCCAAGTGTTTTCCCAGCTAATGAACAATGAAGGTAGATAGCTGTATGGTGCAAATATAAGCAAGAGGTATTATAGCAGTACCCTAAGGTTGAATACTTTTTTTTTTCTGTCAAGTTTTCTTTTGAAAGAAATTGCACCGAAACCATGATTAGCATGATTTATTCATGGAAGGCTCCTTATATAGCACTAGTTCATTGATACTTTCTTACAGATGTTGGAATATCTTCTTGTCTGATATTTGGAGATTGGTTAAAATTTTTGTAGTATAATTTATTCATTAATTTTATACAGCAATTCTGTCTTTGTTCTA

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