Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_30850	LG8	41678735	41680384	hypothetical protein LR48	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
T/A	41678813	missense_variant	p.Glu524Asp
T/C	41678929	missense_variant	p.Thr486Ala
T/C	41679065	synonymous_variant	p.Thr440Thr
G/A	41679066	missense_variant	p.Thr440Ile
G/C	41679081	missense_variant	p.Pro435Arg
C/T,*	41679089	synonymous_variant	p.Lys432Lys
T/G	41679108	missense_variant	p.Lys426Thr
G/A	41679116	synonymous_variant	p.Tyr423Tyr
A/G	41679118	missense_variant	p.Tyr423His
T/G	41679121	missense_variant	p.Lys422Gln
C/G	41679147	missense_variant	p.Cys413Ser
G/A	41679158	synonymous_variant	p.Asn409Asn
G/A	41679164	synonymous_variant	p.Asn407Asn
C/T	41679172	missense_variant	p.Gly405Arg
C/G	41679185	synonymous_variant	p.Ser400Ser
C/T	41679203	stop_gained	p.Trp394*
C/T	41679223	missense_variant	p.Gly388Arg
T/C	41679238	missense_variant	p.Lys383Glu
G/A,*	41679256	stop_gained	p.Arg377*
T/G	41679261	missense_variant	p.Lys375Thr
T/G	41679262	missense_variant	p.Lys375Gln
T/C	41679263	missense_variant	p.Ile374Met
G/T	41679578	synonymous_variant	p.Ala269Ala
C/T	41679629	synonymous_variant	p.Glu252Glu
T/A	41679698	missense_variant	p.Lys229Asn
G/A	41679953	synonymous_variant	p.Thr144Thr
A/T	41680120	missense_variant	p.Ser89Thr
T/A	41680136	synonymous_variant	p.Leu83Leu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_30850.1

MAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKQDGKTYRFFDQLQALENHTPTPHSPKPSPKLPQSAPSRVIPATAASLSLPIATASTTASSLSLPIPTTILTTVPMQPILSNTTLTSTVPHITVPSTTTLPITIPQPMLTTPSIHLSTPSYPPTNPTTNTAPPPSFPTLPTDTFSNSSSSSTSSDETLEGRRKRKRKWKDFFERLMKEVIQKQEDLQKKFLEAIEKREHERIAREEAWRVQEMQRIDREREILAQERSIAAAKDAAVMSFLQKVAEQQNLGQALNSINLVQQPPTQQPQPPLQQLPPSSVAPSALQQPLPAVVSQPLVFPVVSHVTNMEIVKVDNNNNNSSENFRPSSSSRWPKVEVQALIKLRTNLDAKYQENGPKGPLWEEISSSMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYREKSKVEGVAAVKPESTVAPLMVRPEQQWPPQEETMRDRDIRMEDVENEDDEYEEEREGEGEGEEEEDDEEDEEGGGDGKYEIVANKTSGGSVAASTE*

CDS Sequence:
>Vu_30850.1

ATGGCAGAGCTTGGGTATCACAGAAGTTCCAAGAAGTGCAAAGAGAAATTCGAGAACGTGTACAAGTACCACAAAAGAACCAAAGAAGGTCGAAGTGGGAAGCAAGATGGAAAAACATATCGTTTCTTTGATCAACTACAAGCCCTTGAGAATCACACTCCAACACCCCACTCTCCCAAACCATCACCTAAACTACCACAATCAGCACCATCAAGAGTCATTCCAGCAACAGCTGCATCATTGTCACTACCAATTGCAACAGCATCAACAACTGCTTCATCCTTGTCACTTCCAATTCCAACCACAATATTAACAACAGTACCAATGCAGCCAATACTGTCCAACACCACTCTCACTAGTACTGTCCCCCATATCACTGTTCCATCAACAACAACACTCCCTATAACCATACCCCAGCCCATGCTCACTACCCCATCAATACATCTCTCAACTCCTTCTTACCCTCCAACAAACCCTACCACCAACACAGCCCCACCACCTTCTTTCCCCACGCTCCCCACCGACACCTTCTCCAATTCTAGCTCCTCCTCCACCTCCTCCGACGAAACATTGGAAGGTAGGCGCAAAAGGAAGCGCAAGTGGAAGGACTTCTTCGAGAGACTAATGAAGGAAGTGATCCAGAAACAAGAGGATCTACAAAAGAAGTTCCTCGAAGCCATAGAGAAACGAGAACACGAAAGAATAGCAAGAGAAGAAGCATGGAGAGTCCAAGAGATGCAAAGAATCGATAGAGAGAGAGAAATCCTCGCCCAGGAAAGATCCATAGCCGCAGCCAAAGACGCTGCCGTCATGTCATTCCTTCAAAAAGTAGCCGAACAACAAAACCTCGGTCAAGCATTAAACAGCATCAACCTCGTACAACAACCACCAACGCAACAACCTCAACCACCACTGCAACAATTGCCACCATCTAGTGTAGCTCCATCTGCTTTGCAACAACCACTGCCCGCGGTTGTTTCACAACCATTGGTGTTTCCAGTGGTCTCACATGTGACCAACATGGAGATAGTGAAAGTTGACAACAACAACAATAATAGTAGTGAGAATTTCAGGCCATCGAGTTCCTCGAGGTGGCCAAAGGTGGAGGTTCAGGCATTGATAAAGCTTCGAACGAACCTGGATGCAAAGTATCAGGAGAACGGACCAAAGGGTCCTCTATGGGAGGAGATCTCATCCTCGATGAGGAAGCTCGGGTACAACCGAAACGCGAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGCGGAGACCGGAAGATTCGAAAACATGCCCTTATTTCCACCAGCTGGACGCGCTGTACAGGGAGAAGAGCAAGGTGGAGGGAGTGGCGGCGGTGAAGCCGGAAAGCACGGTGGCGCCGCTGATGGTGCGGCCGGAGCAGCAATGGCCACCTCAGGAGGAAACGATGAGAGATAGGGACATCAGAATGGAGGACGTGGAGAACGAAGATGATGAGTACGAGGAAGAGAGAGAGGGAGAGGGGGAGGGAGAGGAAGAAGAAGATGACGAAGAGGATGAAGAAGGTGGTGGTGATGGGAAATATGAGATAGTGGCGAACAAAACGAGTGGTGGTTCAGTTGCGGCATCGACAGAATAG

Promoter Sequence:
>Vu_30850::LG8:41680384-41682384(-)

TTCATCTTCATCTTCATCGCAGGAAAGAAATTAATAACAAGGCGAATTTAAGAGAAAAAGGGTTAAAATATTATTTAATGAAATAAAAAAGGAAAAGAAAAAAGGTGACCTACAGGAGCCGGCCTTTAACTAAATATAGCTGGACAGACAAAAACCAACTATTATCTCTATCGTCCCTGTGCGCAGCTGTTCAAAAATCTATGCATCAATTTATTATTTCGAAAATAATAAATAAATAATTGAATAAATACTACCACATACCTGCATCTACTTTTCCGTGCCACTTTTCTTATTACCATATCAAAAGAGCAGAGTCAGGTGAATTTACCGGATGGGAACAAATAAACAATACAAAAAAATTAAAATAAAAAGATTCCGCAGCAGAAAAAGAGAAGAAAAGGAAAGACGTAAAAAGTTAATTAATTACTGAAAACAGAGAAAAGGGAAATATTTATTATTCTCATTACAATTAATTATTCCTCGTGTTATTATAGAGATGGTAGAATAGAAAATGAAAATAAATAAATAAATAAACAAATTCACCCGGAAAGAAAGGGAAAGAGAGAGATAGCGGTTTGGTATGTATGTATATATACACATATACATTATAATGATAATAATAATAATAATAATAATATTGTTATTATTACATAAAATAAAAAGCCATCAAATTTTTTGAAAGAATTCACCACCCTTTTAGCTCTGTTTATATTTTTAATTTTTCTCCTCGTCTAAGCTGCTGTAACTGCGGTGCTGTTTTGGAAAAGAGGGAGAGAGACCCAAAAGAGACTATGCTCGGGGACTCAGCTGTGTTGGGAGCGGGAGGTGGAAGTGGCGGCGGAGAAGGTGGCGCCTCCGCCGATGCAGTGGCCGGGGTCAGTCATGACGGGGCGGTGGCAGCTAGCGGAGGCGGTGGTGGAGTTGGATCAAATTCAGGGGACGACGAAAGGGGAAGAATCGAAGAGGGAGAACGTAGCTTCGGTGGTAACCGGTGGCCCCGACAAGAGACTTTGGCGCTGTTAAGGATACGGTCGGATATGGACGTGGCGTTTCGAGATGCAAGTGTTAAGGGTCCTTTGTGGGAAGAAGTATCCAGGTGCGTCACCACTCCAACTCAATTATATTAATCTTTCGTTTTTATTATATATATATCACCTTTTTCTTCTTTTCTTTTTAGTTTGCATCTTCTCATTCAATTCATCACTTCACTTCTTCACTTCAATTGATGTGAATTTTTTAGCTGCTGGAAAATAGATTAATGGGGTGTGGAGATCTGAGAATTCAATTCTGCTTTCTTTTTGAGTTTTATTCTCGAAAATGTATTCAGTGTTCAGCTGGTTGCAATTCCAATTTCATCTTTCCCCTCTCTCTTTCCATGGTTTGGATTTTTCTTCATTTTCCAGGTCCTTTCGTGTGTTTTTATTTTCTTTGGCTTAAATTCGTCCCTTTTTTTTTCTTTCGGAGTTTGAGCATAAAATAATTACAAAAGAATTTAGATGTGCAGTCTACATGATTTGGGTGTGATTTGCTTTTCTGACATTCACTTTGGTTCATGTCCTATTTTCCAAATAAGTTACCGACTTGAATTGAGTTATGAAAAGCGAGATTTTTCTTCCCCCTTTATTTCGCTTACCAACTCCTACGGGAAATTAAGGAAGAAGATTATCTGTCAAATCTTCTAACTTGGGTTCATGTGTTTCTCATGGGAGACATGTCTGTTCATCACTTCATGCCATTTTGTTACTCAAAACATCGATTACGTCCAACTTTCGCATTTTCTCCCGTCTCTCTTTCACTTACTTTCTTTCCCTTCCATCACTTCCACTGCTTGATTACTTCATCTCATTTTTATTTTATGTTTATATCACGCTTCCAATGCCTTTTACCCTTTGTCCTCTAGCTCAATTTGATGAGATAAGATAAACCCAGAGAAACTCTACTCTCTCTCTCTCTCTCTCCCTTTTTTTTCATTTTGTCTTCTCTTTTTGTGCGTCAGGAAA

Gene Sequence:

>Vu_30850(-)