Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_30718 LG8 40288865 40292514 PREDICTED: calcium-dependent protein kinase 4-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09159 Environmental adaptation   C 04626 Plant-pathogen interaction [PATH:ko04626]
SNP Position Effect Amino acid change
C/G 40288949 synonymous_variant p.Pro463Pro
A/G 40288987 missense_variant p.Tyr451His
C/A 40288995 missense_variant p.Arg448Ile
G/A 40289027 upstream_gene_variant
A/T 40289029 upstream_gene_variant
C/A 40289057 upstream_gene_variant
G/T 40289198 upstream_gene_variant
T/C 40289210 upstream_gene_variant
C/T 40289227 upstream_gene_variant
G/C 40289231 upstream_gene_variant
G/A 40289339 upstream_gene_variant
T/C 40289375 upstream_gene_variant
C/A 40289383 upstream_gene_variant
C/T 40289948 upstream_gene_variant
A/T 40289962 upstream_gene_variant
A/G 40289982 upstream_gene_variant
G/C 40290056 upstream_gene_variant
G/A 40290123 upstream_gene_variant
G/A 40290142 upstream_gene_variant
A/C 40290338 intron_variant
C/A 40290379 intron_variant
G/T 40290417 intron_variant
T/A 40290501 missense_variant p.Asp297Val
T/C 40290515 synonymous_variant p.Gly292Gly
C/T 40290516 missense_variant p.Gly292Glu
T/A 40290690 synonymous_variant p.Ser273Ser
A/T 40290692 missense_variant p.Ser273Thr
T/C 40290805 missense_variant p.Asp235Gly
A/G 40290814 missense_variant p.Phe232Ser
A/C 40290866 intron_variant
A/T 40290872 intron_variant
A/G 40290909 intron_variant
G/T 40290996 synonymous_variant p.Arg209Arg
A/C 40291049 missense_variant p.Cys192Gly
A/T 40291050 stop_gained p.Cys191*
C/T 40291058 missense_variant p.Val189Ile
G/A 40291226 intron_variant
C/T 40291228 intron_variant
T/C 40291279 intron_variant
G/T 40291328 intron_variant
A/C 40291340 intron_variant
G/A 40291444 intron_variant
A/G 40291513 intron_variant
A/T 40291534 intron_variant
A/T 40291552 intron_variant
T/A 40291596 downstream_gene_variant
G/A 40291629 downstream_gene_variant
T/C 40291760 downstream_gene_variant
A/C 40291778 downstream_gene_variant
G/T 40291813 downstream_gene_variant
T/C 40291873 downstream_gene_variant
G/A 40292040 missense_variant p.Pro159Ser
A/G 40292062 synonymous_variant p.Pro151Pro
G/A 40292140 synonymous_variant p.Ala125Ala

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_30718.1
MQKHGFSAKRSVLPYQTPRLRDHYVLGKKLGQGQFGTTYLCTHKMTGKLYACKSIPKRKLLCQEDYDDVWREIQIMHHLSEHPNVVQIQGTYEDSVFVHLVMELCAGGELFDRIIQKGHYSEREAAKLIKTIVGVVEACHSLGVMHRDLKPENFLFDTPGEDAQMKATDFGLSVFYKPGQAFHDVVGSPYYVAPEVLCKHYGPEVDVWSAGVILYILLSGVPPFWAESEAGIFRQIINGELDFVSEPWPNISESAKELVKQMLDRDPKKRVSAHEVLCNPWIVDDIAPDRPLDSAVLTRLKHFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKEGLRSVGSNLMESEIKSLMEAADIDNSGSIDYGEFLAATLHLNKMEREENLVAAFSYFDKDGSGYITIDELQQATKDFGLGDVHLDEMIKEIDQDNDGRIDYSEFAAMMKTGDPNVGRSRTMKGNLNFNIADAFGMKDSSS*


CDS Sequence:
>Vu_30718.1
ATGCAGAAGCATGGTTTTTCAGCGAAACGTAGCGTGTTACCGTATCAAACACCGAGACTAAGGGACCACTACGTTCTGGGGAAGAAGCTGGGACAAGGGCAATTTGGAACCACTTACCTTTGCACGCACAAGATGACGGGGAAGCTCTACGCATGCAAATCGATCCCGAAGAGGAAGCTTCTGTGTCAGGAGGATTACGATGATGTGTGGAGGGAGATTCAGATCATGCACCATTTGTCAGAGCATCCCAACGTTGTTCAGATACAAGGGACGTACGAGGATTCTGTGTTCGTGCACCTTGTGATGGAGCTGTGTGCCGGGGGTGAGCTTTTTGACAGGATCATTCAGAAGGGGCATTACAGCGAGAGAGAGGCCGCAAAGTTGATAAAGACCATTGTTGGGGTGGTGGAGGCGTGCCACTCTCTTGGGGTTATGCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATACCCCTGGTGAAGATGCCCAGATGAAGGCCACGGATTTTGGCCTCTCTGTCTTCTACAAGCCAGGACAAGCCTTCCATGATGTAGTGGGAAGTCCGTACTATGTTGCCCCTGAGGTGTTGTGCAAGCACTATGGACCAGAAGTGGACGTATGGAGCGCTGGTGTTATCCTATACATCTTACTGAGTGGGGTGCCACCTTTCTGGGCTGAGAGTGAAGCAGGAATTTTCAGACAGATTATAAACGGAGAGCTTGATTTTGTTTCTGAGCCGTGGCCAAATATCTCAGAAAGTGCTAAAGAATTGGTAAAACAGATGTTAGACAGGGACCCTAAGAAAAGAGTTTCTGCTCATGAAGTTTTATGTAACCCTTGGATTGTTGATGATATTGCACCCGACAGACCTCTGGACTCTGCTGTTTTGACACGCCTAAAGCATTTCTCAGCAATGAATAAACTTAAGAAGATGGCATTAAGGGTCATTGCTGAAAGACTTTCAGAGGAAGAAATAGGTGGATTGAAAGAGTTATTTAAAATGATTGACACAGACAACAGTGGGACAATAACTTTTGAGGAACTGAAGGAGGGTTTGAGAAGTGTGGGCTCTAATCTCATGGAATCTGAAATCAAATCCCTTATGGAGGCGGCTGATATAGACAACAGTGGAAGTATAGACTATGGTGAATTTCTTGCTGCTACACTGCACTTGAATAAGATGGAAAGAGAGGAGAATTTGGTTGCTGCTTTTTCCTATTTTGATAAAGATGGTAGTGGTTACATCACCATTGATGAGCTTCAGCAGGCTACCAAGGATTTTGGCCTTGGCGATGTGCATCTAGATGAGATGATCAAAGAGATTGATCAAGACAATGATGGCAGAATTGATTATTCAGAGTTTGCAGCAATGATGAAAACGGGTGATCCGAATGTTGGTAGAAGCAGAACCATGAAAGGCAATTTGAACTTCAATATTGCAGATGCTTTTGGAATGAAAGACTCTTCCTCTTGA


Promoter Sequence:
>Vu_30718::LG8:40292514-40294514(-)
TATATTAAATTTTAGCAGTTTTGGGCTTCTTCTTTTTTTCTTTTTTTAAATCTTATTTATAAGAGTTTATCCACAGTTCAAAAGACTAACTTTGTTAAATAAAGATTTATATTATAAGCTTCATATGTAGAATATTTCACTTATTTCGTGGAAAGATATTATATAATTGAATATATATATATATATATATATATATATAATATTTAATTCAGTATAAACAAGTATTTAATATATTTTATTTTTAGAATAATAAAACAATAGTCTTAGTTTAAAAATTTAATTTTATTAATTATGTTGGACTCTGTTAAAATAATTGAGCATGAAGTTATATAGTATATTGTCACGTATTCTTCAAGAGGAAATTAATGTTAATATGTGTAAAAAATTTATCAATATAAAATTAAATTTAAAGAAAACTAATAAAGACTTTAAATTTTAAGAGCAAAAGGGTAATCACTTAAGGTTAATTCATATTACGAGACAAAATCTATATATAAGATGCATGTTCAATTATTTTAACCATTAATAAAATAAAAATAAAATCAATAGAATTAAATTTTTGAAAATGAGATTTTTTTTATTGTAATAAGAATGAAAAATATGAATATTTATTATAATTTTATATTCTATATGTTTTAATCATTTTAAATATAATTTAAATTAAAAGATGATAATTGAGAATTTAAATACAAAGTTGATTATAATAACTTCCATGATAATATTATCGTGATAATTTCTATAATTACTCCATATTACTTATTTTATTTTTCATTTCTTTTTTATAACAAAATTCTTTTTTTAAGTTTTAAGTACTTTATAATTAATTAAGGTATTTTCAAATGAATATTTTGATAAAAGAATTTGATATACTAAGTACTCATAACATTTTTTATCCCATTATCTTTATTTGATTTTCAACTGATCGATTAACTTGTTGTTTCTCTGTATACTTTCCTCCAACTTATTAGTCATATTATTGAAAATATTGAAAAGAAACACCAATCGATATGAGTTAGATAGAAAAACAAGAAAAATAGATAGTTGACGACAGAATAAACGACATAATAATTTACACGAAAATAAAAATATTTTAAATTGAAGAATTTTTTAATAAAAAAAATTAAAATCACCTAAACTTTCAAAAATTAGTAAATTTTTAAAACATTTATTTATTTTTCTCATAATTACCTTTAATAATATATTGTGGATATATATTAGTAAAGTTTTAAAATATTAACTTTGTGGGGTAGGAGAGAATCACCTTTATGTATAAAATTCCTAAAATATATTCAAATGTAAAGAAAAAAATTAATAAATTGAAAGTTAGATATGTGAAATGAGAATAGGTGGGCTTGGTGTTTCAATCGAGGATAGAATAATTTGAAAGAGAGAATGGTCATTTTTGTGAATTCATACAAGTAACAAGAACATCTTAAATAAAGAAGTTGATGATGAATGGATGAAGAATTTATATAATATTTTATATTTTTATTTTTATTCAATGTTACACTTACACTTAAATTTGAGTTTTTAACAACTTCTCCTTCAGATCTTCATTACATCGGTCTTTATAATTAACATTAAAAATTGTTTATTTTTACTTAATTTTTTAATCGTTATTTAATTTTTTTTTTAAACAGTGTTGTAATTTAAGGCAGCCACACGCAAGTACGTGATGGATGGCTTATATTGAAAAATTCTATTTTCACACAAGCAAAACATGAGACATTAACACAAGCACAACCTAAATAACATCATCATAATCTTATTCTTAACTATGTTTCTTTCGGAATCATGACTATGATTTCATATCCTCCATCTAAACAAAAATAATTATAGCCTTGACAATTGTTACATGCATAGCACTGAGAAAAAGATAAATAAAGGGTCGCAAAGGCAATTCAACTCTGATCAATAATAACATATCACATTCATTTTCAAACCTCCCCCACAGAAACATTTAGGAGTTCAGAGGGAGAGAAAAAGAGAGAACAAACAAA


Gene Sequence:
>Vu_30718(-)
ATGCAGAAGCATGGTTTTTCAGCGAAACGTAGCGTGTTACCGTATCAAACACCGAGACTAAGGGACCACTACGTTCTGGGGAAGAAGCTGGGACAAGGGCAATTTGGAACCACTTACCTTTGCACGCACAAGATGACGGGGAAGCTCTACGCATGCAAATCGATCCCGAAGAGGAAGCTTCTGTGTCAGGAGGATTACGATGATGTGTGGAGGGAGATTCAGATCATGCACCATTTGTCAGAGCATCCCAACGTTGTTCAGATACAAGGGACGTACGAGGATTCTGTGTTCGTGCACCTTGTGATGGAGCTGTGTGCCGGGGGTGAGCTTTTTGACAGGATCATTCAGAAGGGGCATTACAGCGAGAGAGAGGCCGCAAAGTTGATAAAGACCATTGTTGGGGTGGTGGAGGCGTGCCACTCTCTTGGGGTTATGCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATACCCCTGGTGAAGATGCCCAGATGAAGGCCACGGATTTTGGCCTCTCTGTCTTCTACAAGCCAGGTTCCTTTCATCTTTTCTCTATCCAATTTTTCAAACAAACGGTCCACAGCCCTTGTGTTTTAAAGGTCTAGCCTCTTGATCAACTTGATCAGGCACTCTATTCTCTAATCAGAATTCAAATTTCACGTCTGTAATCTATTTTACCCTTTACAGTAAATTTTTGTTACCCAAGATTATCAAGAAGGAACTTCAAATATGAATTTACAACAAACACCAACAACATCCGCGCATAAGTGTCTATTACACAATATTATTGACATGAATATTCACTCGTGAATGCAGAATACCTCAAAAGCACCTGCATATAAGTTTAGTCTATTCGTATTGCATATACATGTCTGCTGATTTTGCCAATGTTCATGATGTATGGTATGGTCTACAATATTTTTTTAATTTTTAACAAAAGTTGTAAATTGTGGTCATGATTTCATCGAGATTTTTGATGTGGTAGGAAATTGCAGGAAAATGTCGCTTCAGTAGCCAAAACTGCAGTTACATGTTCCAAATACCAATCAAAAAGCGCGGACACAGACCCCCCTTGCCCCCTTTTTCATATAAAACCTAGTTATTAACAAGTTGATACATTTACCACTAAATAAAGTGAAAAAAGGACAGGCAAAGCACAAGTTATTCCATATCTCCCTTTGGGATCGAGGAACTTATTACAAAGATTCTTCGATTCCATGATTCCTTTTGGATAAAAACATGTATATTTTGGACGAAGCGATTGAATTGAATACCTATATTCTGCGTCGGACGCAATTTTATTCTATTTTTCATGATGTGGAACAAAAATTTTCCCTTTATGTGTTTAGTTAGTACCGAAAAGAAAACAATATGTATTTACTGCTCATGCATGACTTACAATTCCTTTTGTTGTTTGTCCTCAGGACAAGCCTTCCATGATGTAGTGGGAAGTCCGTACTATGTTGCCCCTGAGGTGTTGTGCAAGCACTATGGACCAGAAGTGGACGTATGGAGCGCTGGTGTTATCCTATACATCTTACTGAGTGGGGTGCCACCTTTCTGGGCTGGTAACGATTCTAATGTTTACTGTATATTTTTTGGACTGACTCTATTTACGATTTAGTCTTCTGGTTGTTATCCTCGTCGTGCCTGAGTTGCTTTCACTTTTTATATTACCTCAGAGAGTGAAGCAGGAATTTTCAGACAGATTATAAACGGAGAGCTTGATTTTGTTTCTGAGCCGTGGCCAAATATCTCAGAAAGTGCTAAAGAATTGGTAAAACAGATGTTAGACAGGGACCCTAAGAAAAGAGTTTCTGCTCATGAAGTTTTATGTGAGTTCCTTGAGTACTAGTCGTCACTGGATTTTCATGTGCTGTTGGCGTATGCCAGATCGTTATATTATCAAAGCTTTGTAGCAGATTTAACTACTATGGAGTCTTGTATAATCAGGTAACCCTTGGATTGTTGATGATATTGCACCCGACAGACCTCTGGACTCTGCTGTTTTGACACGCCTAAAGCATTTCTCAGCAATGAATAAACTTAAGAAGATGGCATTAAGGGTATGTTTGGCTATCATTATACGCCTTATCCTTCTGTTTGATTTCTACAATGATAATAAAAAATTTCCGGAGATTTTTGTTTACTTGTTGAATGGGATAAGTTCATAACTTGTATATGGCTTAAGAGTAGCATTTGCTTTTTAATAATTAAGTATGGACTTCTTAATCCCTTCCACATAATAACTTTGTATATAGGATTGTAGATCTTAGAATGCTTTTAATATGTCATAAATATAAGGGCAGTGATTATGATGATGATGAATGTATATCACATAAGAAAATAAGGGTAGCTAAATACAGAATTGCCAGTTTCTATGAATTCATCTCTCTCATATTAGAGCTTTCTCCATTTGATGGATGTTCTTATCATTTGTTAGATTTCTGTTTGTTCCAGTTAATGATGATTAAATCATTTATATATTTTTTGTTTCAAAATAGAAATTCGTATGTACTTTATAAATTTTATATGCTCTGTCCCTTTTTTATACAGTCTGGTTGCGCTGACACATCTAAATATTCTTTTCAGGTCATTGCTGAAAGACTTTCAGAGGAAGAAATAGGTGGATTGAAAGAGTTATTTAAAATGATTGACACAGACAACAGTGGGACAATAACTTTTGAGGAACTGAAGGAGGGTTTGAGAAGTGTGGGCTCTAATCTCATGGAATCTGAAATCAAATCCCTTATGGAGGCGGTAGGTAGATTACTATTACTGTTATCGGAGAATGTAATACAGCTGTTTTTAGTGTTATTTCAAAGAAGTTCATAAATATTCTGCTTCTAATGTGTATTTTGAGTTGGGTGATCATTCATTGCCTTTGGCAGGCTGATATAGACAACAGTGGAAGTATAGACTATGGTGAATTTCTTGCTGCTACACTGCACTTGAATAAGATGGAAAGAGAGGAGAATTTGGTTGCTGCTTTTTCCTATTTTGATAAAGATGGTAGTGGTTACATCACCATTGATGAGCTTCAGCAGGCTACCAAGGATTTTGGCCTTGGCGATGTGCATCTAGATGAGATGATCAAAGAGATTGATCAAGACAATGTAAGTTCCTGTAAGGGTGTTTACATTTTCGCTAGTACTTGCTGATGTGATTGTTTGTCGTCAGTTGTTTAGTTTCTCTAACTCTTGTTGATTCCATTTTTAGTTTTCCCAATAAAATTGATGATATTACATGAATTCATATCTAAACTTAATGAAATAACATTCTCATAGCAGGTCTCTAAAGTAAATCAAACTTTTACAGAGACACTGATTTCAATTTTCACTTAAAATTAAGAAAAAAAACAAATTTAACTCATAAATACTTAATAAGGCTTTTCTTTCTGTGATAGTGTTGTTTGAAATTATCTTTGAGAGCCTTCTCTTAGGTACTTGAGGCATTGTTTTCCCTTAACTTATGAGGCTTTAGGTCCTAATTGTGTATCGTTGTTTTTCAGGATGGCAGAATTGATTATTCAGAGTTTGCAGCAATGATGAAAACGGGTGATCCGAATGTTGGTAGAAGCAGAACCATGAAAGGCAATTTGAACTTCAATATTGCAGATGCTTTTGGAATGAAAGACTCTTCCTCTTGA