Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_30704 LG8 40177440 40180255 sensitive to proton rhizotoxicity1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C 40177474 3_prime_UTR_variant
T/A 40177498 3_prime_UTR_variant
T/C 40177510 3_prime_UTR_variant
T/C 40177755 missense_variant p.Thr457Ala
C/T 40177918 synonymous_variant p.Gln402Gln
T/C 40177930 synonymous_variant p.Pro398Pro
A/C 40178532 missense_variant p.Cys198Gly
G/T 40178594 missense_variant p.Pro177Gln
G/A 40179041 missense_variant p.Ser28Leu
T/G 40179065 missense_variant p.Tyr20Ser
C/T 40179089 missense_variant p.Cys12Tyr
T/A 40179093 missense_variant p.Asn11Tyr
C/A 40179235 downstream_gene_variant
T/C 40179267 downstream_gene_variant
G/A,* 40179313 downstream_gene_variant
G/A 40179342 downstream_gene_variant
G/T 40179388 downstream_gene_variant
C/G 40179426 downstream_gene_variant
C/A 40179509 downstream_gene_variant
G/A,* 40179536 downstream_gene_variant
A/G 40179558 downstream_gene_variant
C/A 40179578 downstream_gene_variant
C/T 40179581 downstream_gene_variant
T/G 40179586 downstream_gene_variant
G/A 40179671 downstream_gene_variant
C/T 40179785 downstream_gene_variant
A/T 40179919 downstream_gene_variant
A/G 40179934 downstream_gene_variant
C/T 40179953 downstream_gene_variant
G/T 40180115 5_prime_UTR_variant
A/G 40180121 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_30704.1
MNPKGGLCANNCKTSSEPPYFYGFGIESPFNEFNPPSLPIQSVLPGQSNTDVEIPDQENCPLSDSSNTSKLQDWNPGAMLNNLSFLEEKIHQLRDLVHLIVNKKCQPFGQSHELVTQEQQLVTADLTSIIVQLISTAGSLLPSVRHTLTTNPLVGQIDQLHGINLPFGSEPSTGINPQNNSGNKLFDKSTPNDLPNTCEMEQNYNMEEHEPKDEEDVDEGESLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKAVAEPPDPQNRECSSNKVGSVNFCFGSKPSSENVVQNMMDMKGNIDDPVNYFSSLNFEGCNFGTFSEFPQTPFEDSEGSFSFLMSGSFNYGTKFGGGESSSDNLL*


CDS Sequence:
>Vu_30704.1
ATGAATCCAAAAGGAGGCTTATGTGCTAATAACTGCAAAACGTCCTCAGAACCTCCCTATTTCTATGGTTTCGGAATTGAATCACCTTTCAATGAATTCAACCCTCCCTCTCTTCCAATCCAATCTGTACTTCCAGGTCAATCTAACACAGATGTTGAGATCCCTGACCAAGAAAATTGTCCACTAAGTGACTCATCAAATACCAGCAAGCTCCAAGATTGGAATCCAGGTGCAATGTTGAACAATCTTTCGTTCCTTGAAGAAAAGATTCATCAGCTCCGGGATCTAGTGCATTTAATTGTCAATAAAAAGTGCCAACCCTTTGGACAATCTCACGAACTAGTGACTCAGGAACAGCAGCTCGTCACAGCTGATCTTACATCAATTATTGTTCAATTGATCTCTACTGCTGGAAGTCTTCTTCCCTCTGTTAGGCACACCCTCACTACAAATCCCTTGGTTGGCCAGATTGACCAGCTTCATGGGATTAACCTCCCTTTTGGATCAGAACCAAGTACTGGCATTAACCCACAAAATAATAGTGGAAATAAACTGTTCGATAAGTCCACTCCGAATGATCTACCAAATACTTGTGAAATGGAGCAAAACTATAACATGGAAGAACACGAGCCAAAAGATGAAGAAGATGTGGATGAGGGAGAGAGTCTTCCACCCGGTTCCTATGAGATTTTACAGTTGGAAAAAGAAGAAATTCTTGCCCCTCACACACATTTCTGTACAATATGTGGGAAAGGATTCAAGAGGGATGCAAATCTCCGAATGCACATGCGTGGCCATGGTGATGAGTACAAAACCCCTGCAGCTCTTGCAAAACCGCATAAAGAAACCGGGTCCGAACCGAAGCTTATCAAGAGGTATTCCTGCCCCTATGCCGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCAACCACTAAAGACTATTTTGTGTGTCAAAAACCACTACAAGAGAACGCACTGTGACAAGAGCTATATTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTCTGTTCTTGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTTTTCCAAGGCCATACACCGGCTATTCCTTTGGATGACACCAAAGCAGTGGCCGAGCCACCTGATCCCCAGAACCGAGAATGCAGCAGCAATAAGGTAGGAAGTGTGAACTTCTGTTTTGGATCAAAGCCTTCAAGTGAAAATGTAGTTCAAAACATGATGGATATGAAAGGTAATATTGATGATCCTGTGAATTATTTCTCGTCGCTGAACTTCGAAGGCTGTAACTTTGGGACGTTTAGTGAATTCCCTCAAACTCCATTTGAAGATTCAGAAGGTTCTTTCTCTTTTCTCATGTCAGGATCCTTTAATTATGGTACTAAATTTGGTGGTGGTGAATCAAGTTCCGACAATCTGTTGTGA


Promoter Sequence:
>Vu_30704::LG8:40180255-40182255(-)
TTTTTATTTACATTTAGATCTTGTAGAAAAACGTATTTGTTTTCTGTTGAAAAATATTTTTAAAAAGTGAGATTCCACGACAATTTATAAAAGCTTAGTAAGAAGATGAACAGGAGTTTCATATGTATAGAACTTTTGTTTTTTAAGTTTCAAAAGTACATTTCATTGTTCTTCTTTTATATTATTTTAACAACTTTAAAATGTAAACCGATTTGAATAGAATTATTCTGTTAACAAAAAATTACTACCTAGAATTGATAAATCTGTATAATCTATATTGTAAACTTATCGGAAATAAAAAAATATAATTAGATAACTCAACATTATTGGCATTCCTCCCCCATAAAACAACTCAACCTTAAATTAGAAAACCACAACGATATCTTTACAAAGATATTTCATAAACATGAATCAATATTTTTAAAGTATATTATGGAGCTTAATAAAAGCATAGTCACAACACAAAGTGAAGAAGTAATGATGTATATATTTAAAATAATAAAAGAAATCTATATAAACTTCCTACAAAACCCACTAGTAATTTCTCCCTTACTTCAAAATTTTAGCAACTTCTAATGCATAAAATATTACATAACATCATAAAATCATAACAGCAAATAAAAAATTAAGATAAAGTTACATATCTTTTGTAAAAGAAAATATATGTTTGTCACAATTAAGATATTGATGGGGAGGATTTATGGAGATAGACAAAAATAATGAGATAAAACAAGACCTTAATATATAAAGGTTATTACTATCTTTAATCTAAAACAAAACAATAAATTTTTCAATGTAAAAATTAAAATTTACATTTAAATTCTCAACTAGACACATAACACCAATGAAAAATATATCAAATTCACACATAAAATACTAATACTTCTTTTAATTTAAAACTAATTTTATAAAAAAAAAATTCTTACGTGTTCAACTTTTTCATCTCTGTTTAGACACACCTATATTTCCACCATGTATTGTTAGTACCCAAAGCTTTTTCTTGCATCCTTTTAATCAAACTAAAAAAACAACCTTGAATTGAAAAAAATGTTAATAATTATTAGAAGAGGCTAGGTATTCTTGCTTGCCTTTAAAATTTATATAAATATAAAGAAGATGAACAAACTTTAACATACTTGAAGAAGACACTATATCTCTCTCGAAAGAGTGGCAACTTTTCATTAAGTGAAATAACAGATTCAAAGAACAATCTCCAGATACAGTGTACCAATTTTTTTTCTTTTGAAGAGGAACACTCTCATTAGTGGAAATACAAATATGGAAAAATAATTCTTACATATTTAGAGATAATCTTGTTCAAAATAAGATGAAATCTTTTTTAAAGACGATGAAAATCTTAAACATAAAACAATTCAGATCTTCAATAGGAAAGCTAAAGAAATCAATATTTTCTTGCACCATCAGATATAGTTTCTAACTTGGTAGGACTACTTAAAATACATTATCCAGTAACTTTTTTCAACCATGAGAAAAAAATGTTTACAAAAATATTGTGATATTATTATATATATGGGTTACGTAGATAGATCTTAAAAAGTACATGAAAAGGAGTAACAAAGCCAAGTTTGTAGGGAGCGTAGCTTCCTGGGAAGCTCTCACAGCTTTCAGTTGCCGCTACAGGAACATGCCTCCACCAGCTACTTCACCACAACACAACCATTATTACACTTTTCACACGCTTTCATTTTTTCAAGACAAGTCAAATCATTTTCATATGCATGCATGCATGTACAGTCCAACAAAGCACATTTCATCCTAGCAGTTAGTTGTCTGGTGCGTCTGTGTATGTGGGACCCTTCATCTCAAATCAAAGGCTCAACCTTTTTGGCTTCTTCTCATCTTTGATTAAAACCCACCAAGCAACGGCCCTGATTGATGGTTGCAGAGAGTAAGTGATAAGAAATGCCCCACGACCTCTATTGTGGGCCCCACATAGCATTGACTCATCTTATGGTGGGTAGTAACAGTGAGTTGGAGTT


Gene Sequence:
>Vu_30704(-)
GACCAAATATGCTTCTGCTTTGTTCAACAGGAAGGAAGGAAGAAACATAGTTTAAGTTTTAAGCTTCTTGGTAACTGAGATATTATTATTTTTATTATTATTGATTATATAAGCAGTCACTTCATCTCCTATGTTCTCTTCCCCATCGCAATTTTCCCTCTTTTTCTTTTCATTTCAAGGGAGCATTCAGATTGTTATATAGCTTTGAGTCGGTAAGTTCTTTACTCTTTGTATTTCTGCTTCTAATTCTGTGTTTAGGGTTTGGTCAGAAAGCATGCGTCTTTTTCTGCACCAGTTTTTTGGGGGAGTTTTTTTTATATATTGGTACCTTGAATCTATCATGTGTTTTTTTTTTTTTTTCCTTTTTGTCGTTCTGAATAGTTTCTTTTTAGCCCTCTCCTTTTATGGTGTCAAAATCTGAATTGGTGTTTTGTAGCAACTGATTTGATGTGTTTGAAACGGGGGTTGTTGATGGTTGGAAAGAACGAGTGAGAATGAATGGGTTGATATGCTTTTTAGTACGTAACTATCTAGTTATCCTTTAAGAGATTTATGATCTGCAAATGGGGTTTGGGAATTTCCAGCTTTATGTGGAATAACTGAAGGGTGATGGGTTGAGGGTTTTGCCTTTTTTTTCCCCTATCTTTTCTGATTGTACGATGATTTAAAAATTTGTGGAAATGAGAAAATTTGAATCTGGATTTTTGGATCTGAAGATACCTGAAGAGACGAATAGCTAGCTTGGTGTTGAGAGTTTGAGACAACTGTGTAGTTATTGACTAAATTGAAAGCTTAGATTTTAGTAGCTAATTGGCAATATTAGCAGAAAGTTGACTGATTTACTAGAGTGGTTCTGATTTCATGAATCTGATGCCATTGTGAATGGAAGGTGATATTTGTATTTGCACAAACACTAATGTTGAATGGTATATGGTATATTTCCTCTATTAAGGAGGGTTCATGTATGTGTGAGCGCGAGCGCATTTATATAATCTTTAAGTAAACAATCTAATGCAATATGTCCTTTCTATTGTTAATTTAATTGTTTATAAAACATCTTATGTACATCGGCTGTTCTTTAAATAGATACCTTTGATTGACAGGGTTTTTGATTCCGTAAATAGAGTTTAAAATGAATCCAAAAGGAGGCTTATGTGCTAATAACTGCAAAACGTCCTCAGAACCTCCCTATTTCTATGGTTTCGGAATTGAATCACCTTTCAATGAATTCAACCCTCCCTCTCTTCCAATCCAATCTGTACTTCCAGGTCAATCTAACACAGATGTTGAGATCCCTGACCAAGAAAATTGTCCACTAAGTGACTCATCAAATACCAGCAAGCTCCAAGATTGGAATCCAGGTGCAATGTTGAACAATCTTTCGTTCCTTGAAGAAAAGATTCATCAGCTCCGGGATCTAGTGCATTTAATTGTCAATAAAAAGTGCCAACCCTTTGGACAATCTCACGAACTAGTGACTCAGGAACAGCAGCTCGTCACAGCTGATCTTACATCAATTATTGTTCAATTGATCTCTACTGCTGGAAGTCTTCTTCCCTCTGTTAGGCACACCCTCACTACAAATCCCTTGGTTGGCCAGATTGACCAGCTTCATGGGATTAACCTCCCTTTTGGATCAGAACCAAGTACTGGCATTAACCCACAAAATAATAGTGGAAATAAACTGTTCGATAAGTCCACTCCGAATGATCTACCAAATACTTGTGAAATGGAGCAAAACTATAACATGGAAGAACACGAGCCAAAAGATGAAGAAGATGTGGATGAGGGAGAGAGTCTTCCACCCGGTTCCTATGAGATTTTACAGTTGGAAAAAGAAGAAATTCTTGCCCCTCACACACATTTCTGTACAATATGTGGGAAAGGATTCAAGAGGGATGCAAATCTCCGAATGCACATGCGTGGCCATGGTGATGAGTACAAAACCCCTGCAGCTCTTGCAAAACCGCATAAAGAAACCGGGTCCGAACCGAAGCTTATCAAGAGGTATTCCTGCCCCTATGCCGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCAACCACTAAAGACTATTTTGTGTGTCAAAAACCACTACAAGAGAACGCACTGTGACAAGAGCTATATTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTCTGTTCTTGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTTTTCCAAGGCCATACACCGGCTATTCCTTTGGATGACACCAAAGCAGTGGCCGAGCCACCTGATCCCCAGAACCGAGAATGCAGCAGCAATAAGGTAGGAAGTGTGAACTTCTGTTTTGGATCAAAGCCTTCAAGTGAAAATGTAGTTCAAAACATGATGGATATGAAAGGTAATATTGATGATCCTGTGAATTATTTCTCGTCGCTGAACTTCGAAGGCTGTAACTTTGGGACGTTTAGTGAATTCCCTCAAACTCCATTTGAAGATTCAGAAGGTTCTTTCTCTTTTCTCATGTCAGGATCCTTTAATTATGGTACTAAATTTGGTGGTGGTGAATCAAGTTCCGACAATCTGTTGTGACAGTATATGATGATGTTACTCTCTCCATAATGTCTCTGTTTTCTTTTTCCCCTGTTAACAAATAATCCTTTTGTTTTTGTCAAATTTATAAAACCAGAAAAAGTCATGTACTCCCCATTTCTTTACATAAAATGTTTCTTATTTATAACTTCATTTATAATCATAAAATCATCTCATTTTTTACTGT