Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_30702 LG8 40163315 40164700 protein SCARECROW-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C 40163449 synonymous_variant p.Tyr45Tyr
A/G 40163782 synonymous_variant p.Ala156Ala
A/G 40163800 synonymous_variant p.Arg162Arg
A/T 40163814 missense_variant p.Tyr167Phe
C/T 40164436 synonymous_variant p.Asp374Asp
A/T 40164529 synonymous_variant p.Ser405Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_30702.1
MEDSEEDELLNLSLSVAADRERKKKGKIIREHNVSMSSTTARKSYESYEGKIFRLLQMREQMLRQDHRRKGVVEDGSGLPLIHLLLSTATAVDDNNLDSSLENLTDLYQTVSLTGDSVQRVVAYFADGLAARLLTRKSPFYDMLMEEPTTEEELNAFTDLYRVSPYYQFAHFTANQAILEAFEKEEERNNRALHVIDFDVSYGFQWPSLIQSLSEKATTGNRISLRITGFGKNLKELQETESRLVSFSKGFVSLVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNTLSCFMKISDTLGFVHSLNPSIVVVVEQEGSRSPRSFLSRFTDSLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNNDVDGVDCPKYERMETWKARMENHGFVATKISSKSMIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQSV*


CDS Sequence:
>Vu_30702.1
ATGGAAGATTCAGAGGAGGATGAGCTTTTGAACCTTAGCCTTTCAGTTGCTGCGGATAGGGAAAGGAAAAAGAAGGGAAAGATAATTAGGGAACATAACGTCTCTATGAGTAGTACTACTGCTAGGAAATCCTATGAAAGCTATGAAGGGAAGATATTTAGGCTTCTCCAAATGAGGGAGCAGATGCTAAGACAAGACCATAGGAGGAAAGGAGTTGTAGAAGATGGGAGTGGCCTCCCCTTGATCCATTTGCTGCTCTCAACGGCAACTGCTGTTGATGACAACAACTTGGATTCATCCTTAGAGAATCTCACTGATTTGTACCAAACTGTTTCCCTAACAGGTGACTCGGTTCAGCGTGTGGTAGCTTATTTTGCTGATGGTTTGGCCGCAAGGCTTCTCACAAGGAAATCCCCATTCTACGACATGCTCATGGAAGAACCAACAACTGAGGAAGAGTTAAATGCATTCACAGATCTCTACAGAGTTTCACCTTACTACCAATTCGCTCATTTCACTGCAAACCAAGCTATCTTGGAGGCCTTTGAGAAAGAGGAAGAGAGGAACAACCGCGCTTTGCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCCTCTCTCATTCAGTCTCTCTCGGAGAAGGCAACTACCGGCAACCGCATATCCCTCAGGATAACCGGATTCGGGAAGAATCTCAAAGAGCTTCAAGAAACTGAGTCTAGATTGGTTAGTTTCTCAAAGGGTTTTGTCAGTCTTGTGTTTGAATTCCAAGGGCTGCTAAGAGGCTCAAGGGTCATCAACCTAAGGAAGAAAAAGAATGAAACGGTGGCTGTCAACTTGGTTTCTTATTTGAACACTTTGAGTTGTTTTATGAAGATCTCTGACACATTGGGATTTGTTCATTCCCTTAATCCCTCCATTGTTGTGGTGGTGGAGCAAGAGGGCAGCAGGAGTCCTAGGAGCTTCTTGTCAAGGTTCACAGACTCCTTGCACTACTTTGCAGCCATGTTTGATTCACTGGATGATTGTCTCCCACTAGAGAGTGCTGAGAGGTTGAGAATTGAGAAGAAGCTTCTGGGGAAAGAGATCAAAAGCATGCTCAACAATGATGTGGACGGTGTGGATTGTCCAAAGTATGAAAGGATGGAAACATGGAAAGCAAGAATGGAGAATCATGGGTTTGTTGCCACCAAAATAAGCTCAAAGTCAATGATCCAAGCAAAACTGTTGCTGAAGATGAGGACCCATTATTGTCCTCTTCAGTTTGAGGAAGAAGGAGGTGGAGGTTTCAGGGTTTCCGAAAGAGATGAAGGAAGGGCTATCTCTTTAGGGTGGCAAAATAGGTTTCTGCTCACAGTCTCAGCATGGCAATCAGTCTGA


Promoter Sequence:
>Vu_30702::LG8:40161315-40163315(+)
GTCCTTGCATCACACCTTTCTTTCTAACACACCACCCATCCTTTCTCTTTAGTCCACTTCATGCTATCTATTTATTACACACGTACCCTCTTCTTTTTTCTTCTTTTTTTCCTTCATTTCTCACCCTATACTCAAATAAAATATATGTTTTCGGGTTTTTTTGTCTTTCACATCTCATGGCAGAGGGGCCTCACGTGGGTTTTTCTGACACCAGAGCATGTTTTTCTACCTTACCACTTTTCCTTCTTTCCTTCCTCGTTTTACCTTTCCATTCATCAAGTTCAGACAAAGAGGTTTCTTGCATTTGGGTTTTGCTCTTCTTTCTTACACTGCTATATATTTTCTTCTTTCTTGGATATTATCTCTTGTGGAGTTATATATGCAGAAGGAGCTTTCTCTATGTTAGATGCTGCGTTTTTCTTCAGTTATCCTCTCAGCTTTGGATAACATTATACTTAGTGCATCCAAGAAACTGCCATATGTCACCCTCAAATTGCACGTTCGTCGTGTGTGTCCTATTTGAAGCATATTAATAGTAACTTATGTGTCCTCCATTAACAAGACAATCAAGAATTAAGAACTTTCCCATGTTTGATGTGACCTTTAAAGGATCCAGCACTGCTACCTATGACCATTTCAATCACCAATACCAACGCCCATTAATAACTCATTCTCCTCCTTTCTACACGGAAAATCATTATTTTTTTCTTTCGAAAGTGATTGATACTAATTGATAGCCACAAAATTATTTCCCAGATTCTTCCCAAGCTAGCTATAAATTAATTTAATCTAATTATTTCAAATTATAACTTTATATATACTGTTGCCTGAACCACTGTTTTTTTTTTTGTATACGTACTATTTAAGTCAAATAATTTATTAATCCTTCGTTGGGTGATCGAGTTGGTAAGTAATGTTCACAGTGGCAGATGCTTTGTGGATTAAAGTAAACCTTTTATCCCAATCATCTTACTGCCAAAAGGAGAAAAATGAAGTTGAATAAGCATAGACAGACACAGTGCATCCATATTCATCATAAAAAATATAGTTTATCACACGGGTAAAGTGGTGTCACTTTTTGTTAGCATCCATTTGTCTTGGTATATTATGACGAGAAAGTGTCAAAAGTTTCCTTGCAGAAGATCCCAAAGTACTAGTGGAATATATGCTAAGAAAGCCAAATCCTTGTAAGTGGCTCTAAATTGTGCCAATAAGAAGCCATGCTGAGAAGGCTAGGATCCAAATTTCTTTGTTTCCATCAAAGGCAATAAAATAAAGTCTGAAATGTGGCTCATATAACTAATGAGCTACTCGAAAAGAATGTCATTGACTAATCTATTTATTTGAATATTTTTTATATATAGATATAATAAATATAGCGTGTACCTGCATCAATTCGTAGTTCACAGATATGGAACTCTAAGTAGGTAATTGATCAAAGGGAAGGAATATGTATGGGGGAGAAAAGGAATAGGATGATGAAGGTAACTTGTTAGGGCAATTAATTAGAAGGAAAACTGTGTGAAGACAATTCTTTCAAGGACGGTACGTTTGATTCCCCATTGACAACGCTGTCTCTTGTCCAATTCATGTGGCATCTTCCAAGCCTTCCCAACTACCAAAGGAGTAAAAACCCATAAACAGGACCCTTTAATAGATTTCAAAAGCAGTCCAATATAATAATAATGAAAAGATCAATGTGTTTTTCCTGACCCAAGACACTGATTCTAAAGAATAAAAAGATACCCTTCTTAATCTCTCCGTCTTATTGGAAAATATGGGAGAAAAAACAATATATCTGATCCTTCTCTCTTTCTTCATCTTTTGCTCCTATATATACCCATGTCATGACATGAAGGAATTTTTGTGAGTTCTCCCCCATAAAAGTTCACAAGCATATCAGGTTTATGTCATAGATTTACTTTCCTTCTCTCATCACACAAACACACACACCCCCACACAGGTTTTGTTTGTTCTCTTTCTCTCTTTTGTTTCAGATA


Gene Sequence:
>Vu_30702(+)
ATGGAAGATTCAGAGGAGGATGAGCTTTTGAACCTTAGCCTTTCAGTTGCTGCGGATAGGGAAAGGAAAAAGAAGGGAAAGATAATTAGGGAACATAACGTCTCTATGAGTAGTACTACTGCTAGGAAATCCTATGAAAGCTATGAAGGGAAGATATTTAGGCTTCTCCAAATGAGGGAGCAGATGCTAAGACAAGACCATAGGAGGAAAGGAGTTGTAGAAGATGGGAGTGGCCTCCCCTTGATCCATTTGCTGCTCTCAACGGCAACTGCTGTTGATGACAACAACTTGGATTCATCCTTAGAGAATCTCACTGATTTGTACCAAACTGTTTCCCTAACAGGTGACTCGGTTCAGCGTGTGGTAGCTTATTTTGCTGATGGTTTGGCCGCAAGGCTTCTCACAAGGAAATCCCCATTCTACGACATGCTCATGGAAGAACCAACAACTGAGGAAGAGTTAAATGCATTCACAGATCTCTACAGAGTTTCACCTTACTACCAATTCGCTCATTTCACTGCAAACCAAGCTATCTTGGAGGCCTTTGAGAAAGAGGAAGAGAGGAACAACCGCGCTTTGCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCCTCTCTCATTCAGTCTCTCTCGGAGAAGGCAACTACCGGCAACCGCATATCCCTCAGGATAACCGGATTCGGGAAGAATCTCAAAGAGCTTCAAGAAACTGAGTCTAGATTGGTTAGTTTCTCAAAGGGTTTTGTCAGTCTTGTGTTTGAATTCCAAGGGCTGCTAAGAGGCTCAAGGGTCATCAACCTAAGGAAGAAAAAGAATGAAACGGTGGCTGTCAACTTGGTTTCTTATTTGAACACTTTGAGTTGTTTTATGAAGATCTCTGACACATTGGGATTTGTTCATTCCCTTAATCCCTCCATTGTTGTGGTGGTGGAGCAAGAGGGCAGCAGGAGTCCTAGGAGCTTCTTGTCAAGGTTCACAGACTCCTTGCACTACTTTGCAGCCATGTTTGATTCACTGGATGATTGTCTCCCACTAGAGAGTGCTGAGAGGTTGAGAATTGAGAAGAAGCTTCTGGGGAAAGAGATCAAAAGCATGCTCAACAATGATGTGGACGGTGTGGATTGTCCAAAGTATGAAAGGATGGAAACATGGAAAGCAAGAATGGAGAATCATGGGTTTGTTGCCACCAAAATAAGCTCAAAGTCAATGATCCAAGCAAAACTGTTGCTGAAGATGAGGACCCATTATTGTCCTCTTCAGTTTGAGGAAGAAGGAGGTGGAGGTTTCAGGGTTTCCGAAAGAGATGAAGGAAGGGCTATCTCTTTAGGGTGGCAAAATAGGTTTCTGCTCACAGTCTCAGCATGGCAATCAGTCTGA