Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_30611 LG8 39029294 39030342 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cell differentiation, positive regulation of transcription, DNA-templated, trichome differentiation, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, trichome differentiation, positive regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/T 39029418 missense_variant p.Ser42Phe
C/T 39029443 intron_variant
T/A 39029539 intron_variant
A/T 39029681 stop_lost p.Ter83Leuext*?
G/A 39029691 synonymous_variant p.Arg86Arg
A/T 39029813 intron_variant
A/T 39029916 missense_variant p.Asn119Ile
C/T 39029934 missense_variant p.Thr125Ile
G/A 39029938 synonymous_variant p.Thr126Thr
G/T 39030036 missense_variant p.Trp159Leu
T/C 39030042 missense_variant p.Leu161Pro
A/T 39030101 missense_variant p.Thr181Ser
A/G 39030132 missense_variant p.Gln191Arg
A/G 39030227 missense_variant p.Ile223Val
G/A 39030259 missense_variant p.Met233Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_30611.1
MKRKGAYENQEAVNRGPWSAEEDQILINYVHLHGEGKWGQISRRTGLKRGGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKVEEKHNDNNNNVPVELRMESSNAFGIAIDPAKSSEAVMCTEVMMATEAVNDSVNTKNLMSTNYNENPFASVPADHPEGLGKQFDLTELLMPQEGCDFNGYACVEIPPHFGEHSCRVNDAMCETWYDDWKNEDYFPLDYDMDFPLF*


CDS Sequence:
>Vu_30611.1
ATGAAAAGAAAGGGAGCTTACGAGAACCAAGAAGCTGTGAACAGAGGTCCTTGGTCTGCTGAGGAAGATCAAATTCTTATTAACTACGTTCACCTCCATGGAGAAGGAAAATGGGGGCAGATTTCCAGAAGAACTGGTTTAAAACGAGGGGGAAAGAGTTGCAGACTTCGATGGTTGAATTATCTAAAGCCAGATATCAAGAGAGGAAACATTTCTTCTGATGAAGAAGATCTCATTATCAGACTACATAGCCTCCTAGGGAATAGATGGTCGCTTATTGCGGGAAGATTGCCTGGGCGAACAGACAATGAAATCAAGAACTATTGGAATACTTATTTGAGAAAGAAAGTAGAGGAGAAACACAATGATAACAACAACAACGTTCCTGTGGAATTAAGAATGGAATCTTCAAACGCTTTTGGTATTGCTATTGATCCTGCGAAATCTTCTGAAGCAGTAATGTGTACAGAGGTTATGATGGCAACTGAAGCAGTGAATGATTCAGTGAACACAAAGAATTTAATGTCAACAAATTATAATGAAAACCCATTTGCGTCTGTCCCAGCAGATCATCCAGAAGGTTTGGGCAAACAGTTTGATTTAACTGAGCTGTTAATGCCGCAGGAGGGTTGTGATTTCAATGGATATGCTTGTGTTGAAATACCCCCACATTTTGGAGAACACTCCTGCAGAGTTAATGATGCCATGTGTGAAACATGGTACGATGATTGGAAGAATGAAGACTATTTTCCACTAGATTATGATATGGATTTTCCTTTATTTTAA


Promoter Sequence:
>Vu_30611::LG8:39027294-39029294(+)
CTGGTATGATGATTTTTATTCTCAAAGTTTGGGTCAGAACTCCCTTTTGCTCGGGAGACACCACCCTACAAACAAACAACAAACACCATCATCATCATCATCTTCCCTTCGTTTTTCTTTCTTCCTATTTTCAATGACTGGCCGAAAAAATGATGGTGTACAGATCAAACTACACAGGGAGATTCCCTTACAAGATCTTCCTTATAATATTTCCTCAAAGTTATCTCATAATACTGTAATGATAAAGATTATGAGTTTTTCTTGAGAAGAGACCCTGTAAAATCCGATTGGCGAGGGACCCTTTAGTTATAAAATTGTACTGGTAATGATAGCAGGATATGCAGGTTTTGAGCCATCAATGTGGTATGATTTGAGGTTCCATATCATCAAAATTTCTTTACTCCATTTCGTTTCAGTTCGTCATTGTTTTCAGAGCACTGCTGTTCTTACAAAAGAGAGATTTCGCGAAATTCACACTACTAGGTTTGCATGTTATCAAATCGCTATTTAAAATCTATGCTTCTGACAGAAAACATGAATGCTTCGTTGATGTCTGTGACGTTTGTCTCGTCTTATTTTCAGAAGAATGATGTTTTCATACATTTCGAAAAATTACTCAGACAATCCACTTTAATAATGTAATAACATATATTAATATTTTTAGTTAAAAATAAAATAAATACGTCTAAAATATCTTATTTTAAATTGTTACATGGATTTTTTTATTTGGCGGTGTAACTATCACCACTTCCATGTGTCTCCTGTATTTACACTCTTGCGAGATACGAGAAAAATAAGTTAGAAAATGCAATAAAAAAATGAATAAAAATTAAAAATTTAAAATATGTAATTGAGAAAAATAGATAAATGATGAGAAAAATAAATAAAAATAATGTCCTTTGTTCATCACTTTTAAAATTATGTCTGATTTCCCTTCAAAATAATATATATTAATCATTTCTACATATATTTTTGTATATATTTTCTTTAAGTCCATACATCGCATGGCGTTGGCATGTACCAAAATAGATGATGTAAAAAATGGTACATGATATTTATAACTATGAACATGTTTTGATGTATCATTGACATGTGTTGTAAATTTGTCAATTTTGTAATAATAATATTAAGTAGCACTTAAAGCGAATAACATCTTATCACTACGACTATATTAATCAAATTCTCAAACACTTTTAATCATATCTTTTATAGAAGTTATGAAGTATAAAGTTTAATTTGACAATGAGACCAACTTGTTGAGAGTTATCATCAGTTTCGATCACGTAGAATAGAAGTCATAACCATTAACTACATTGTATATCAGAGTTTTATATATTTTTTAATAAAAGAATATCAAACTATGAATCAATTGTTTAAAATTATTTCAATTTAATAATTTTGCATTCGAGTTTTAAACATATAAGTGTATTAAATACATGAAAGACAAATTTTATAGTCTATATGATTATGTTTTTCCGAGCAAATATTTTCACGTGAAATGTATTTGTATAAAAAGATAATAAAAGATTGTTGTCTGTGATAAACTTGCTTAAACACAATCCATATATATATACTCGTCTGTATTTCTGCTTCACTTAATTATTTTTATTATGTTACCTTCGATATATTACGAAAATAATTGAATTTAGTAGTTTCTGACAATCATACATTCTCATCAGTCAAAATAATAAAATTTTTAGCTGAACTTTTGCATGCATCAAAATATGAACTTCATAATTTCAAATTACTGTTCTCTTTCGGGGGTAGAAAAGAAGGAGCGCACTACCGTCTACCAGTCTCATTTCAGAAGCCATACTGTTGTCGTGGTCGCCAACTACAAAGTCAAACTTATTTAGTTAATTTTTTTTTTAAAAAAAGAACATTTATTTAAGGAAACAACTATATATAGTCTTTAGCCACAAACACGTGAGAAACCAATGAAAAGAACAGGAACACAACAACCATCTGCATAACCAAAGCGTAGAGAGAGCTAGATAAGA


Gene Sequence:
>Vu_30611(+)
ATGAAAAGAAAGGGAGCTTACGAGAACCAAGAAGCTGTGAACAGAGGTCCTTGGTCTGCTGAGGAAGATCAAATTCTTATTAACTACGTTCACCTCCATGGAGAAGGAAAATGGGGGCAGATTTCCAGAAGAACTGGTATGTTTCAAATCGATAACTTGATAGTTTGTTTAGTCTTTTCTTTTTTTTTCTCTTCCAGTTTTCATTGCATGAACTCGTTACTTGTGAATATGTATATGTATATCGATATTTATATATAGGTGTGTGTGTGTGTAGGTTTAAAACGAGGGGGAAAGAGTTGCAGACTTCGATGGTTGAATTATCTAAAGCCAGATATCAAGAGAGGAAACATTTCTTCTGATGAAGAAGATCTCATTATCAGACTACATAGCCTCCTAGGGAATAGGTACATTGGTTTATAACATTTGCAGAGAATTTTTCCATTTTTGAGACAGAAGAGAAAATATTGTTAAAATTGGTAATTATTACAGACAGTGACAACCTTTTTGATACATGGTATAACTGTTACAGATGGTCGCTTATTGCGGGAAGATTGCCTGGGCGAACAGACAATGAAATCAAGAACTATTGGAATACTTATTTGAGAAAGAAAGTAGAGGAGAAACACAATGATAACAACAACAACGTTCCTGTGGAATTAAGAATGGAATCTTCAAACGCTTTTGGTATTGCTATTGATCCTGCGAAATCTTCTGAAGCAGTAATGTGTACAGAGGTTATGATGGCAACTGAAGCAGTGAATGATTCAGTGAACACAAAGAATTTAATGTCAACAAATTATAATGAAAACCCATTTGCGTCTGTCCCAGCAGATCATCCAGAAGGTTTGGGCAAACAGTTTGATTTAACTGAGCTGTTAATGCCGCAGGAGGGTTGTGATTTCAATGGATATGCTTGTGTTGAAATACCCCCACATTTTGGAGAACACTCCTGCAGAGTTAATGATGCCATGTGTGAAACATGGTACGATGATTGGAAGAATGAAGACTATTTTCCACTAGATTATGATATGGATTTTCCTTTATTTTAA