Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_30610	LG8	39012515	39015550	PREDICTED: transcription factor bHLH111-like isoform X1	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function	enables	protein binding, transcription cis-regulatory region binding, protein dimerization activity, transcription cis-regulatory region binding, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
C/A	39012652	synonymous_variant	p.Ser46Ser
A/T	39012826	splice_region_variant&intron_variant
A/T	39012831	intron_variant
A/G	39012833	intron_variant
C/A	39013049	intron_variant
T/C	39013180	intron_variant
G/T	39013306	intron_variant
T/G	39013307	intron_variant
C/T	39013328	intron_variant
T/C	39013339	intron_variant
C/A	39014104	missense_variant	p.His348Asn
G/T	39014234	synonymous_variant	p.Gly357Gly
A/T	39014285	missense_variant	p.Glu374Asp
G/T	39014664	synonymous_variant	p.Leu422Leu
G/T	39014678	missense_variant	p.Gly427Val
G/T	39014959	intron_variant
A/T	39014960	intron_variant
A/C	39014961	intron_variant
T/A	39015038	intron_variant
T/A	39015040	intron_variant
T/A	39015125	intron_variant
T/A	39015175	intron_variant
A/G	39015183	intron_variant
G/T	39015270	synonymous_variant	p.Pro442Pro
T/A	39015347	intron_variant
A/T	39015348	intron_variant
C/T	39015457	synonymous_variant	p.Cys474Cys
C/T	39015465	missense_variant	p.Pro477Leu
A/G	39015467	missense_variant	p.Thr478Ala

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_30610.1

MTEESAGNTVATSITPLNWWYLQANSISSWNDTNNTWNNQPNPNSSSSCEEDISVSTSFTNASNHSTLTVESSRRLIDPPAPSSNEFMGEHASDNQLWTHVLSGVGSNGELQSGQEFGENFLGALSSKSMTSTMFQPVCDYLKKLDHSSWEYSGSTSLNSFEKHLNGFNEAMIENNERLTKLSNLVSTCSIAPPDPEVSSHFDPQTNSMTLNSSMDHFPQSDHFKQPFGDSTCSLGGVANRNSGVFPSYDHDTKIKQEFHASEVQGSVYGKSLNANGYQNGFNGFSVGDSCKLYHGMPNLPPCTRNFSDVISFNSRFGRPVIGIHAQKPSMKYLNVSEPKKQGLQAPSPIRTNINGKGEGTTREVKKKRSEESSEAMLKKLKQDTSTASSSKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQLLSNPYLKANCHKDPWGSLDRKDKDDTKLDLRSRGLCLVPTSCTPLVYRESGGPDYWTPAYRGCLYR*

CDS Sequence:
>Vu_30610.1

Promoter Sequence:
>Vu_30610::LG8:39010515-39012515(+)

CGGTTGGATTATTGGCCCAATAATAACTTAAACGTTGATCCAATTATGGTCTAACATTGTTGAGGTAGCGGATGGACCGAATGGTCCTGAATATTAGTCGTTTGATCTATACTATATAGCATACGGAATGGAATTGGCCAATAAGAAATTAAAGAAAAAATGTGGTTACCATATGTACAATAAATGATTTGCTTGTAAAAATGCTTTGGAAATTTTAATTTATAGTGTATTTTTATTTCAACCACTCATTTTTCCTCTCTTGAAAAATATCAAGTTGGGAAAATGGTTTAATAACTGATTTCTCTTGAACTTCAATATTGGTCATTAAAATGTCCCAATTTCGTCTTTCTCAAATGGAAAATGTTCTTGCATTCATAAACCCTAAACAAATAACCATAGCGTAGAGACAAAGCCGAAATTTAATCACCATTTAATAAAATGATTGTACACCGTACCGAATTTTGTAACCATTGATGAACCTCATCCTTGATGACGGTACTGAAGGACTACTGCCTAAACCCTAAATAATCAACTCCCACTTTCTGGCTTTCTCAAATGAAAAATCTCCAAAGCATTTCAAAGAGTAGAGGAACGACGAAAATAAACACTTACCACAATTTCAAATTATAACCACAACATTTCATCAAAACCTCTCCCACTCTAAATACATTGAGCCTGCTAACTTATTAATATTAATATTTTTCACACATCAACCGTATCAAATGAGCAGCACCTTCTCATCTATTGTTAGAGTATCATTTTCCATTTGTGACATAGTGGGTCCTACAACCTTAATTTAGTCAAACGCACATGGAAAATAAATTCAGCGCGCGATTCTAAAATTAGTGTGCGGGATTCTATCATTCTAAGTAATCAAAAAGCTAAAACCTCTTCCTCCCGCTCCAAACCCTATTAATTTACAAATTAAGTTCATGACATTATGTAAAAGTATGATTAAATAACAATTTTATTAAACTATTTTTGTATTAATTTATATTATTATAATGTTATATTTTTTTAGTCGCTTTAACTAAATTTATTAATAATTAGTAAATACTTAAATTGAACCTGAACATAAAAATAAACATTTAGTATAAGTTAAATTATTAGATATTTTAGCTTTTGAAAAACTCGTCTGATTTTAACAGAACACTTGTAAACCAAATAAAGATGGCATAATTTCTTTCAAAAAGGTTCAAATGCAAGTTTCCTGAAATTGTAAAAATAGTACTAGGTCAAAATCATGTCAAAAGAGGCTCATCTCTATCCAATTTCTACCCGACATTAATAAATTACACTATTTTTAGGATACATGCAGTTCGTTTAGAACTGCTAGATCTCATCCTTTAAGGTATTTTATTACATGATAAAAAAAAATTGACGAGGAACAGTATAGTTACATAAACATATAATTAACTGCATGCGAAATTATTTTATGCTTTTCCGTAGGATTTATCACTAACAACATAATTTTTATTCACCTTTTACTAGAGAAAGTTATTTATCCCCATGGAATGAGTGGTTGACTATTACAAAATTGTTATTTTTTTTAAATCAATATATGAAAAATCAATTATTATAAAAGAAAAAGGTAGCACAAGTGTGTGTGATGTAATTATATTTTTAATTATCTAAAATGAAAGTAGTATAAAACAATGAATGCGTAATAACCTAAGTGGTAATAAAACTAGCAACACCAAATACCATGCTCGCCAACATTAGCAACATTTAGCCAAACTCGTGCTGGCCCATCAGCTTTTATAATAATTGCCCACGAACGTTAGTGGAAAAACTCAGGTTGCATATTTTATTGTCTCCCCTATAATTGATATAACCTACAAATTTATACGTCACTGAAATTGGAGCAATCCCCTCCATAGAATCCCCACCACAACAGCAAAGAAACAAAGAGAGTTATATATCCAACCCTAGCTAGGTCCATTATTCAACCAATAAAAGGGAGAGTAAGAAGGAAAATTTTGAGAGATATTATAGAGAGA

Gene Sequence:

>Vu_30610(+)

ATGACTGAAGAAAGTGCTGGAAACACAGTTGCAACCTCTATCACCCCATTAAACTGGTGGTATCTCCAGGCAAATTCTATTTCTTCCTGGAACGATACTAATAACACATGGAACAACCAACCAAACCCTAATTCTTCCTCTTCTTGTGAGGAGGATATATCTGTTTCTACATCTTTCACTAATGCTTCCAACCATTCAACCCTCACTGTTGAGTCCTCTCGCCGACTCATTGACCCTCCTGCTCCTTCCTCCAACGAGTTCATGGGAGAGCATGCTTCGGATAATCAACTTTGGACCCATGTTCTATCGTAAGTTTATATGCTTTTAGAATAAGATTAATAAATATAGTTTTATGATTAAGATTATCTACAGTACTTTTATCATTAAGTATATTCGATGTTGATTATTCGTATTGATAGTAATCAGAGATAAGAGAATAATCTTCAAGGATGGTAAATGGGTGAAGTTTAAGGTGCATATATAGGTAGTAATTAATAATAGGGTTAAAGTACTATGAGTTTCATTTGTCGTACACGTTCTTCTAGGCTTTGCTTTCCACTATCTAACAGTATGTGCGCTACTCCAGTCAACTAATTCGTTTCTGTGTTCATACTACAAAACTGTGATCTCTTATCCTCTCTCGGTTTCTTTTGTATCATCCAAAATCAATAAAGCCACTCTTAAACACTGTAAGGTATACAAGCTTAATATATGCGTGTTGTGAATTATGTTTGAAATCTTTATACAGTTGAATTAATGGATATTTTCTTTGTTCATACATAGTAAGATTGGTTTGGTGTATTTTTCATTTAGCTTACCTACAATACAACTAACTTTTTGGTCAAATAATTTTAGAGGTGTTGGATCTAACGGCGAGTTACAGAGCGGCCAAGAATTTGGAGAGAACTTTCTGGGTGCACTGTCATCAAAAAGCATGACAAGCACTATGTTTCAACCAGTCTGTGACTACTTGAAGAAACTTGATCATAGCAGTTGGGAATATAGTGGTTCAACTTCATTAAACAGTTTTGAGAAGCATTTAAATGGGTTCAATGAGGCGATGATTGAGAATAATGAAAGGTTGACCAAATTATCTAATCTTGTAAGCACTTGCTCTATTGCCCCGCCAGACCCGGAAGTAAGTAGCCACTTTGATCCACAAACAAACAGCATGACCTTGAATTCTTCCATGGATCATTTCCCACAATCTGATCACTTCAAGCAACCTTTTGGAGACTCCACATGCTCTCTTGGAGGCGTAGCAAACAGAAATTCTGGAGTGTTCCCATCCTATGATCATGACACCAAGATCAAGCAAGAGTTTCATGCAAGTGAAGTGCAAGGTTCTGTATATGGAAAATCATTAAATGCAAATGGGTATCAAAATGGATTTAATGGCTTTTCAGTGGGTGATAGTTGCAAACTCTACCATGGGATGCCCAATCTTCCTCCATGCACAAGAAATTTCTCAGATGTTATATCCTTTAATAGTCGATTTGGAAGGCCAGTTATTGGAATCCATGCTCAGAAGCCTAGCATGAAGTACCTGAACGTATCTGAACCAAAGAAACAGGGTCTTCAAGCACCATCACCGGTAAGGTTATTATAAACTGATTATTATATATGGTTTATCGTACTGATTTAGCAGAATTTTGTTTATGAAATATGCATAATATAATATGATGTGATGCAGATAAGAACTAACATTAATGGAAAAGGGGAGGGTACAACACGTGAAGTAAAGAAGAAAAGATCAGAAGAATCTTCAGAAGCAATGTTAAAAAAGCTTAAGCAAGATACATCAACAGCTTCTTCTTCAAAGGTAAGATATAAAATGCCAAGATGAACTTATGACTGTAAAGAAAAGCAGAAAGTGGGGAACCTCCTTTTGTGCACTGTTAAGAAACTTCTATTCATTGTTTAAAAGGTGCAGGCACCCAAAGTCAAGCTAGGGGACAAAATCACAGCCCTTCAGCAAATTGTGTCTCCATTTGGAAAGGTTACTACACATTTTGCACTAACACTCTCCTTTTTTTCGTTTCCTCTTCTTTATGAATATATATAATCAACAGTGCTCTACTTTTCTCACTACCTACTTCATAATGATCATTTTTTTTGTTGAATTCCAGACAGATACTGCATCTGTGCTGTTCGAAGCAATAGGGTACATAAAGTTTCTTCAAGAACAAGTCCAGGTGGGTATCATTATGCAAAACTTTCTTTCCGTTGCATTATGCATCTATATAATACGCTATTATTGTTGTTGTTGCTTTCTTTCTTCTTCTTCTTATCATTTTTAATTCCGACGAAACTATACTTCTTGATCGCATCCCTTAATAAAATTAATAAAGGAATGTTACGTTGAAAGATTGCACATTTTGTCGATCCCACATCAATCATGCACTATGATCAGACTTCAAGTAAATTAAAGATCACCCAAAAAAGAAATTATTTCTTTATGACTGGCCATCCCCTACATACGTAACGTGGAACAAAGATGCAATTTTTAACACCATTTTTTTTTCTTTTTACAATAACAGTAATAGTAAGATTTTAAACCAACAATTTCATGCAAACCATCCAAAATAATATTAAGCCGATTTCAGTAAGTTATAAGACAACAACTTTAACGAATTATACATTTATCTTTCTTGAATATTTAATGGTTAAATTTTTTGTGGTTCTATTTCTTTCGTGTTTCTTTAGCTTAATGTACAGTTTCATTCATGCATAACTTGCAGCTACTGAGCAACCCGTACTTGAAGGCTAACTGTCACAAGGTAAGAAAGTTCTCCATTTCTCTTAAGTCTTCCAAACTTTCGCTGGCAACAATAACTAACCCTATTGTCATTGGTTTTCATGGGACTGAAGGATCCATGGGGAAGCTTGGATAGAAAAGACAAGGACGATACAAAGCTAGATCTTCGGAGCAGAGGTCTTTGCTTAGTTCCTACTTCATGTACTCCTCTAGTTTACAGAGAGAGCGGTGGACCAGATTACTGGACACCAGCATACAGAGGATGTTTGTATAGGTGA